Wall clock time and date at job start Tue Mar 31 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.34681 * 120.01844 * 95.00006 * 4 3 2 6 6 C 1.41734 * 119.80355 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.07071 * 179.97438 * 6 5 4 8 8 N 1.34887 * 119.86147 * 359.97438 * 6 5 4 9 9 H 0.96997 * 120.07963 * 180.02562 * 8 6 5 10 10 C 1.38031 * 119.82812 * 0.02562 * 8 6 5 11 11 N 1.31199 * 132.98684 * 179.97438 * 10 8 6 12 12 N 1.28595 * 110.06473 * 180.02562 * 11 10 8 13 13 C 1.31364 * 110.12201 * 359.97438 * 12 11 10 14 14 S 1.76202 * 126.53311 * 179.97438 * 13 12 11 15 15 C 1.76203 * 99.99917 * 0.02600 * 14 13 12 16 16 H 1.08001 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.38556 * 119.99785 * 179.97438 * 15 14 13 18 18 N 1.31714 * 119.99664 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00244 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46870 * 89.99744 * 19 17 15 21 21 H 1.48495 * 109.47304 * 209.99547 * 19 17 15 22 22 H 1.48496 * 109.46815 * 329.99927 * 19 17 15 23 23 N 1.37102 * 120.02193 * 274.72747 * 4 3 2 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08000 * 120.10120 * 359.97438 * 5 4 3 32 32 H 0.97000 * 119.99678 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2213 1.5438 -1.1608 6 6 5.6386 1.5427 -1.1550 7 8 6.2533 1.6337 -2.2025 8 7 6.3053 1.4407 0.0132 9 1 7.2753 1.4400 0.0209 10 6 5.6038 1.3373 1.1974 11 7 5.9756 1.2274 2.4507 12 7 4.9422 1.1605 3.2132 13 6 3.8449 1.2241 2.4939 14 16 2.1904 1.1707 3.0975 15 6 2.4999 1.0187 4.8255 16 1 3.5156 0.9871 5.1914 17 6 1.4403 0.9408 5.7149 18 7 1.6718 0.8276 7.0066 19 14 -0.3163 0.9961 5.0820 20 1 -0.7817 -0.3840 4.7921 21 1 -1.1942 1.6086 6.1112 22 1 -0.3694 1.8077 3.8396 23 7 4.2325 1.3447 1.1840 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6836 1.6249 -2.0940 32 1 0.9300 0.7727 7.6292 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004250284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:19 Heat of formation + Delta-G solvation = 58.178010 kcal Electronic energy + Delta-G solvation = -19528.137937 eV Core-core repulsion = 16423.684427 eV Total energy + Delta-G solvation = -3104.453510 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.29529 -40.10723 -37.49414 -35.58517 -33.85129 -32.80320 -31.36762 -29.57049 -27.89272 -26.01769 -24.13702 -23.17523 -22.47961 -21.30709 -19.69664 -18.70651 -17.64765 -17.40994 -16.78123 -15.84484 -15.46052 -15.18845 -15.12010 -14.77685 -13.90546 -13.88528 -13.62495 -13.18043 -12.50242 -12.19474 -12.06224 -11.76108 -11.60668 -11.33615 -11.30277 -11.28061 -11.17367 -10.85822 -10.70057 -10.28170 -10.19085 -9.61145 -9.23452 -9.10049 -8.84053 -7.25088 -6.58796 -4.41285 0.53366 1.63059 1.66602 2.32813 2.81270 2.90697 2.99514 3.02370 3.12876 3.32401 3.84141 3.91188 4.11844 4.43175 4.71538 4.79340 4.84205 4.85181 5.11183 5.22342 5.39860 5.53404 5.57677 5.67694 5.78376 5.90197 6.06996 6.11500 6.23333 6.37376 6.53175 6.96850 7.66471 7.74445 8.44861 8.77945 8.86794 10.49879 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.006662 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.144464 B = 4202.028162 C = 5359.178956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.102 4.102 4 C 0.207 3.793 5 C -0.264 4.264 6 C 0.559 3.441 7 O -0.530 6.530 8 N -0.607 5.607 9 H 0.430 0.570 10 C 0.375 3.625 11 N -0.284 5.284 12 N -0.254 5.254 13 C 0.187 3.813 14 S 0.096 5.904 15 C -0.539 4.539 16 H 0.124 0.876 17 C 0.104 3.896 18 N -0.853 5.853 19 Si 0.840 3.160 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.238 1.238 23 N -0.437 5.437 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 0.425 -14.566 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.140 4.140 4 C 0.103 3.897 5 C -0.291 4.291 6 C 0.353 3.647 7 O -0.407 6.407 8 N -0.259 5.259 9 H 0.271 0.729 10 C 0.017 3.983 11 N -0.129 5.129 12 N -0.095 5.095 13 C -0.182 4.182 14 S 0.329 5.671 15 C -0.687 4.687 16 H 0.141 0.859 17 C -0.108 4.108 18 N -0.487 5.487 19 Si 0.664 3.336 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.163 1.163 23 N -0.132 5.132 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.194 0.806 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.399 0.395 -14.111 14.520 hybrid contribution 0.110 0.077 -0.332 0.358 sum -3.290 0.471 -14.442 14.820 Atomic orbital electron populations 1.21734 0.94434 1.02322 1.02221 1.21563 0.97075 0.93975 1.03409 1.21220 0.86192 1.00543 1.06043 1.20851 0.95964 0.89747 0.83142 1.21757 0.92999 1.16075 0.98309 1.17029 0.88852 0.76717 0.82144 1.90928 1.70161 1.50579 1.29018 1.42507 1.11296 1.70135 1.01994 0.72881 1.21590 0.79650 1.06816 0.90260 1.74507 1.22267 1.21599 0.94534 1.74919 0.92550 1.20114 1.21955 1.27493 1.05035 1.06595 0.79061 1.82849 0.89292 1.85840 1.09083 1.22680 1.00228 1.58979 0.86795 0.85856 1.24656 0.98753 0.93158 0.94228 1.69939 1.32980 1.44619 1.01166 0.87054 0.85009 0.80480 0.81079 1.18383 1.18633 1.16293 1.43635 1.06656 1.56398 1.06544 0.92128 0.91912 0.92608 0.91372 0.90410 0.87951 0.87756 0.80599 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.15 0.37 -1.06 16 2 C -0.12 -1.32 5.66 -26.74 -0.15 -1.47 16 3 C -0.10 -1.12 4.72 -27.88 -0.13 -1.26 16 4 C 0.21 2.80 6.07 -81.49 -0.49 2.30 16 5 C -0.26 -3.25 9.55 -39.51 -0.38 -3.63 16 6 C 0.56 8.11 7.73 -14.87 -0.12 7.99 16 7 O -0.53 -8.77 17.93 5.10 0.09 -8.68 16 8 N -0.61 -8.80 5.38 -15.02 -0.08 -8.88 16 9 H 0.43 5.26 8.92 -40.82 -0.36 4.90 16 10 C 0.37 6.64 9.12 -318.74 -2.91 3.73 16 11 N -0.28 -5.93 12.22 30.33 0.37 -5.56 16 12 N -0.25 -5.90 11.03 30.81 0.34 -5.57 16 13 C 0.19 3.89 8.12 -87.71 -0.71 3.18 16 14 S 0.10 1.98 15.87 -107.50 -1.71 0.27 16 15 C -0.54 -14.11 9.91 30.85 0.31 -13.81 16 16 H 0.12 3.65 7.16 -52.49 -0.38 3.28 16 17 C 0.10 2.69 5.49 -17.48 -0.10 2.60 16 18 N -0.85 -23.59 13.97 55.48 0.78 -22.81 16 19 Si 0.84 17.71 27.73 -169.99 -4.71 13.00 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.24 -4.59 6.73 56.52 0.38 -4.21 16 23 N -0.44 -7.60 3.00 -59.46 -0.18 -7.78 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.03 7.30 -51.93 -0.38 0.65 16 29 H 0.10 1.30 5.81 -51.89 -0.30 1.00 16 30 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 31 H 0.18 1.61 8.04 -52.49 -0.42 1.19 16 32 H 0.28 7.02 8.32 -40.82 -0.34 6.68 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -30.46 290.52 -8.14 -38.61 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.11 Total: 4.44 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -4.31 Total: -1.42 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 1.23 Total: -50.59 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.71 Total: 13.00 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.71 Total: 0.27 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.46 -8.14 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004250284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.785 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds