Wall clock time and date at job start Tue Mar 31 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 N 1.27011 * 125.12181 * 0.02562 * 3 2 1 5 5 N 1.39342 * 114.48029 * 179.97438 * 4 3 2 6 6 C 1.34781 * 125.65021 * 180.02562 * 5 4 3 7 7 O 1.21788 * 119.99859 * 179.97438 * 6 5 4 8 8 C 1.41741 * 119.99880 * 359.97438 * 6 5 4 9 9 H 1.07999 * 119.99780 * 353.71143 * 8 6 5 10 10 C 1.40176 * 119.99591 * 173.71515 * 8 6 5 11 11 N 1.30606 * 120.00475 * 6.23836 * 10 8 6 12 12 Si 1.86807 * 119.99500 * 186.24016 * 10 8 6 13 13 H 1.48497 * 109.47118 * 94.98564 * 12 10 8 14 14 H 1.48501 * 109.46773 * 214.98468 * 12 10 8 15 15 H 1.48501 * 109.47385 * 334.98438 * 12 10 8 16 16 C 1.47233 * 108.69835 * 0.02562 * 5 4 3 17 17 O 1.42907 * 110.66166 * 241.55375 * 16 5 4 18 18 C 1.53000 * 110.66287 * 118.44316 * 16 5 4 19 19 F 1.39891 * 109.47547 * 61.45265 * 18 16 5 20 20 F 1.39903 * 109.46951 * 181.45440 * 18 16 5 21 21 F 1.39900 * 109.46824 * 301.44767 * 18 16 5 22 22 C 1.51206 * 125.11926 * 179.71855 * 3 2 1 23 23 H 1.08996 * 109.47018 * 300.00059 * 1 2 3 24 24 H 1.08995 * 109.46843 * 59.99944 * 1 2 3 25 25 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47165 * 120.00065 * 2 1 3 27 27 H 1.09000 * 109.47512 * 239.99939 * 2 1 3 28 28 H 0.96999 * 119.99998 * 179.97438 * 11 10 8 29 29 H 0.96700 * 114.00224 * 298.55031 * 17 16 5 30 30 H 1.09002 * 110.56422 * 298.61651 * 22 3 2 31 31 H 1.08997 * 110.56008 * 61.45459 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.2964 2.4560 0.0005 5 7 1.9955 3.6614 0.0009 6 6 1.4422 4.8904 0.0019 7 8 2.1540 5.8786 0.0027 8 6 0.0319 5.0327 0.0021 9 1 -0.5986 4.1620 -0.1010 10 6 -0.5442 6.3035 0.1361 11 7 0.2136 7.3673 0.1382 12 14 -2.3960 6.4756 0.3116 13 1 -2.7518 6.5518 1.7513 14 1 -2.8454 7.7131 -0.3755 15 1 -3.0629 5.2989 -0.3015 16 6 3.4387 3.3700 0.0001 17 8 4.0596 3.8939 1.1759 18 6 4.1023 3.9324 -1.2586 19 9 3.9492 5.3226 -1.2852 20 9 5.4644 3.6133 -1.2499 21 9 3.5001 3.3751 -2.3918 22 6 3.4883 1.8287 0.0061 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 -0.1851 8.2467 0.2305 29 1 3.9922 4.8547 1.2615 30 1 3.9847 1.4628 0.9049 31 1 3.9926 1.4609 -0.8875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004487010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:14 Heat of formation + Delta-G solvation = -186.597895 kcal Electronic energy + Delta-G solvation = -23708.953006 eV Core-core repulsion = 19576.982854 eV Total energy + Delta-G solvation = -4131.970152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.61235 -47.21113 -46.95793 -40.05776 -36.81311 -35.98147 -33.39447 -32.72709 -30.48906 -29.61296 -26.92114 -25.67025 -23.98247 -21.86163 -20.30795 -19.53829 -18.45027 -17.92714 -17.70527 -17.11166 -15.86355 -15.16573 -14.97193 -14.56777 -14.17634 -14.01747 -13.86629 -13.79196 -13.55458 -13.47152 -13.27898 -13.16222 -13.03995 -12.75630 -12.63905 -12.02766 -11.96347 -11.41387 -11.30631 -11.23846 -11.07968 -10.71684 -10.63855 -10.44603 -10.37028 -9.48542 -9.03899 -8.03851 -7.78073 -6.48934 -4.95049 2.50621 2.88176 3.04868 3.11765 3.16844 3.41690 3.85327 3.98882 4.04130 4.24048 4.42382 4.60344 4.69624 5.00439 5.14379 5.35485 5.49658 5.58042 5.59956 5.65829 5.86200 5.98037 6.22735 6.45281 6.58281 7.22324 7.53853 7.80905 8.04049 8.15956 8.75545 9.13707 10.18347 10.41316 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.008759 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.885994 B = 3196.056853 C = 4429.522010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.035 3.965 4 N -0.184 5.184 5 N -0.476 5.476 6 C 0.561 3.439 7 O -0.555 6.555 8 C -0.505 4.505 9 H 0.084 0.916 10 C 0.083 3.917 11 N -0.746 5.746 12 Si 0.918 3.082 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.260 1.260 16 C 0.276 3.724 17 O -0.537 6.537 18 C 0.424 3.576 19 F -0.147 7.147 20 F -0.186 7.186 21 F -0.180 7.180 22 C -0.112 4.112 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.275 0.725 29 H 0.400 0.600 30 H 0.116 0.884 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -11.842 -0.508 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.160 4.160 4 N 0.007 4.993 5 N -0.311 5.311 6 C 0.376 3.624 7 O -0.435 6.435 8 C -0.539 4.539 9 H 0.103 0.897 10 C -0.140 4.140 11 N -0.373 5.373 12 Si 0.742 3.258 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.183 1.183 16 C 0.146 3.854 17 O -0.342 6.342 18 C 0.367 3.633 19 F -0.128 7.128 20 F -0.168 7.168 21 F -0.161 7.161 22 C -0.152 4.152 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.253 0.747 30 H 0.134 0.866 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.998 -10.967 -0.390 11.376 hybrid contribution 0.182 0.749 -0.252 0.811 sum 3.180 -10.218 -0.642 10.721 Atomic orbital electron populations 1.21637 0.94048 1.01049 1.03671 1.19979 0.96962 0.87883 1.02770 1.24849 0.90650 0.95983 1.04542 1.73808 1.26010 0.92063 1.07445 1.51751 0.99477 1.04402 1.75432 1.17088 0.89980 0.76951 0.78373 1.90746 1.63059 1.32887 1.56774 1.20145 0.90192 0.94291 1.49297 0.89747 1.25901 1.00505 0.95117 0.92512 1.69997 1.36923 0.98815 1.31600 0.86168 0.81808 0.78737 0.79119 1.19460 1.20198 1.18328 1.22795 0.84677 0.94650 0.83310 1.86506 1.77663 1.29766 1.40314 1.21484 0.76659 0.78416 0.86783 1.93393 1.94936 1.27971 1.96491 1.93146 1.33983 1.92812 1.96809 1.93153 1.83388 1.85361 1.54233 1.21988 0.98167 0.89258 1.05779 0.91878 0.91869 0.92714 0.89962 0.89976 0.91457 0.74669 0.86580 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.35 37.16 0.35 -1.39 16 2 C -0.04 -0.41 6.53 -27.88 -0.18 -0.60 16 3 C 0.04 0.58 7.19 -79.06 -0.57 0.01 16 4 N -0.18 -3.87 10.30 34.83 0.36 -3.51 16 5 N -0.48 -11.45 3.53 -53.74 -0.19 -11.64 16 6 C 0.56 15.87 7.32 -14.92 -0.11 15.77 16 7 O -0.56 -16.80 11.43 5.11 0.06 -16.74 16 8 C -0.50 -14.21 9.03 -37.52 -0.34 -14.54 16 9 H 0.08 2.28 7.45 -52.49 -0.39 1.89 16 10 C 0.08 2.24 5.49 -17.35 -0.10 2.14 16 11 N -0.75 -21.29 11.76 55.56 0.65 -20.63 16 12 Si 0.92 19.69 29.56 -169.99 -5.03 14.66 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 C 0.28 5.67 0.98 -66.89 -0.07 5.60 16 17 O -0.54 -10.95 13.14 -35.23 -0.46 -11.41 16 18 C 0.42 8.83 2.41 37.16 0.09 8.92 16 19 F -0.15 -3.57 13.91 2.25 0.03 -3.54 16 20 F -0.19 -3.42 17.11 2.25 0.04 -3.38 16 21 F -0.18 -3.72 16.67 2.25 0.04 -3.68 16 22 C -0.11 -1.78 6.10 -27.00 -0.16 -1.94 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.27 7.05 8.29 -40.82 -0.34 6.72 16 29 H 0.40 8.38 7.83 45.56 0.36 8.74 16 30 H 0.12 1.60 8.00 -51.93 -0.42 1.19 16 31 H 0.10 1.41 7.45 -51.93 -0.39 1.02 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -32.75 282.86 -3.41 -36.16 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.08 Total: 5.48 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.09 Total: 13.97 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.82 Total: -35.78 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.40 Total: -28.16 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 0.11 Total: -10.60 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.75 -3.41 -36.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004487010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.436 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds