Wall clock time and date at job start Tue Mar 31 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 N 1.27011 * 125.12181 * 0.02562 * 3 2 1 5 5 N 1.39342 * 114.48029 * 179.97438 * 4 3 2 6 6 C 1.34781 * 125.65021 * 180.02562 * 5 4 3 7 7 O 1.21788 * 119.99859 * 179.97438 * 6 5 4 8 8 C 1.41741 * 119.99880 * 359.97438 * 6 5 4 9 9 H 1.07999 * 119.99780 * 353.71143 * 8 6 5 10 10 C 1.40176 * 119.99591 * 173.71515 * 8 6 5 11 11 N 1.30606 * 120.00475 * 6.23836 * 10 8 6 12 12 Si 1.86807 * 119.99500 * 186.24016 * 10 8 6 13 13 H 1.48497 * 109.47118 * 94.98564 * 12 10 8 14 14 H 1.48501 * 109.46773 * 214.98468 * 12 10 8 15 15 H 1.48501 * 109.47385 * 334.98438 * 12 10 8 16 16 C 1.47233 * 108.69835 * 0.02562 * 5 4 3 17 17 O 1.42907 * 110.66166 * 241.55375 * 16 5 4 18 18 C 1.53000 * 110.66287 * 118.44316 * 16 5 4 19 19 F 1.39891 * 109.47547 * 61.45265 * 18 16 5 20 20 F 1.39903 * 109.46951 * 181.45440 * 18 16 5 21 21 F 1.39900 * 109.46824 * 301.44767 * 18 16 5 22 22 C 1.51206 * 125.11926 * 179.71855 * 3 2 1 23 23 H 1.08996 * 109.47018 * 300.00059 * 1 2 3 24 24 H 1.08995 * 109.46843 * 59.99944 * 1 2 3 25 25 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47165 * 120.00065 * 2 1 3 27 27 H 1.09000 * 109.47512 * 239.99939 * 2 1 3 28 28 H 0.96999 * 119.99998 * 179.97438 * 11 10 8 29 29 H 0.96700 * 114.00224 * 298.55031 * 17 16 5 30 30 H 1.09002 * 110.56422 * 298.61651 * 22 3 2 31 31 H 1.08997 * 110.56008 * 61.45459 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.2964 2.4560 0.0005 5 7 1.9955 3.6614 0.0009 6 6 1.4422 4.8904 0.0019 7 8 2.1540 5.8786 0.0027 8 6 0.0319 5.0327 0.0021 9 1 -0.5986 4.1620 -0.1010 10 6 -0.5442 6.3035 0.1361 11 7 0.2136 7.3673 0.1382 12 14 -2.3960 6.4756 0.3116 13 1 -2.7518 6.5518 1.7513 14 1 -2.8454 7.7131 -0.3755 15 1 -3.0629 5.2989 -0.3015 16 6 3.4387 3.3700 0.0001 17 8 4.0596 3.8939 1.1759 18 6 4.1023 3.9324 -1.2586 19 9 3.9492 5.3226 -1.2852 20 9 5.4644 3.6133 -1.2499 21 9 3.5001 3.3751 -2.3918 22 6 3.4883 1.8287 0.0061 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 -0.1851 8.2467 0.2305 29 1 3.9922 4.8547 1.2615 30 1 3.9847 1.4628 0.9049 31 1 3.9926 1.4609 -0.8875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004487010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:13 Heat of formation + Delta-G solvation = -212.450003 kcal Electronic energy + Delta-G solvation = -23710.074038 eV Core-core repulsion = 19576.982854 eV Total energy + Delta-G solvation = -4133.091184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.27530 -48.82560 -48.70770 -41.62531 -38.72488 -37.56567 -34.92170 -34.53662 -32.00546 -31.09909 -28.84984 -27.31308 -25.20739 -23.45212 -22.01138 -21.01689 -20.07046 -19.62811 -19.40756 -18.84198 -17.86864 -16.73895 -16.33650 -16.13249 -15.70372 -15.64185 -15.47771 -15.20801 -15.19120 -15.06652 -14.91940 -14.85509 -14.72164 -14.51599 -14.07239 -13.67598 -13.19619 -13.06552 -12.91929 -12.64322 -12.51211 -12.30353 -12.08650 -12.05244 -11.75070 -11.02554 -10.95810 -10.13098 -9.48598 -8.49053 -7.07220 1.12269 1.24622 1.35570 1.40584 1.52955 1.79465 2.16058 2.23329 2.33006 2.63937 2.68783 3.13334 3.22708 3.50136 3.62047 3.76184 4.29751 4.46925 4.55466 4.64065 4.67236 5.14768 5.19932 5.30849 5.31802 5.59379 5.77735 5.94272 6.08474 6.48371 6.69228 7.31418 8.15850 8.43469 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.008759 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.885994 B = 3196.056853 C = 4429.522010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.074 3.926 4 N -0.243 5.243 5 N -0.498 5.498 6 C 0.552 3.448 7 O -0.592 6.592 8 C -0.537 4.537 9 H 0.085 0.915 10 C 0.033 3.967 11 N -0.793 5.793 12 Si 0.999 3.001 13 H -0.259 1.259 14 H -0.265 1.265 15 H -0.252 1.252 16 C 0.265 3.735 17 O -0.536 6.536 18 C 0.422 3.578 19 F -0.173 7.173 20 F -0.170 7.170 21 F -0.180 7.180 22 C -0.110 4.110 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.282 0.718 29 H 0.394 0.606 30 H 0.147 0.853 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -14.838 -0.325 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.122 4.122 4 N -0.050 5.050 5 N -0.329 5.329 6 C 0.366 3.634 7 O -0.476 6.476 8 C -0.572 4.572 9 H 0.103 0.897 10 C -0.186 4.186 11 N -0.421 5.421 12 Si 0.818 3.182 13 H -0.183 1.183 14 H -0.190 1.190 15 H -0.175 1.175 16 C 0.135 3.865 17 O -0.340 6.340 18 C 0.365 3.635 19 F -0.155 7.155 20 F -0.151 7.151 21 F -0.162 7.162 22 C -0.150 4.150 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.093 0.907 29 H 0.246 0.754 30 H 0.165 0.835 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.620 -14.028 -0.210 14.272 hybrid contribution 0.445 1.454 -0.333 1.557 sum 3.065 -12.573 -0.542 12.953 Atomic orbital electron populations 1.21638 0.94759 1.02526 1.01519 1.20373 0.96342 0.84623 1.06198 1.25990 0.90698 0.97167 0.98316 1.73913 1.26661 0.91873 1.12601 1.51193 1.01031 1.04693 1.76002 1.17158 0.90294 0.78010 0.77904 1.90695 1.63922 1.34902 1.58052 1.20513 0.90904 0.95105 1.50629 0.89731 1.27053 1.06217 0.94164 0.91198 1.70108 1.39665 0.99661 1.32712 0.84977 0.74448 0.79184 0.79619 1.18331 1.18955 1.17503 1.23248 0.83085 0.97387 0.82742 1.86482 1.77628 1.29294 1.40611 1.21656 0.77442 0.77260 0.87178 1.93339 1.95178 1.30304 1.96630 1.93170 1.32661 1.92511 1.96766 1.93142 1.83542 1.85154 1.54342 1.22256 0.98394 0.85586 1.08732 0.94055 0.94129 0.89356 0.86242 0.86339 0.90747 0.75392 0.83499 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.35 71.98 0.67 -2.38 16 2 C -0.04 -0.65 6.53 29.85 0.19 -0.45 16 3 C 0.07 2.19 7.19 46.83 0.34 2.52 16 4 N -0.24 -10.11 10.30 -41.35 -0.43 -10.54 16 5 N -0.50 -24.32 3.53 -542.10 -1.91 -26.23 16 6 C 0.55 32.56 7.32 85.11 0.62 33.19 16 7 O -0.59 -37.74 11.43 -4.63 -0.05 -37.79 16 8 C -0.54 -31.35 9.03 23.61 0.21 -31.14 16 9 H 0.08 4.74 7.45 -2.91 -0.02 4.72 16 10 C 0.03 1.80 5.49 85.35 0.47 2.27 16 11 N -0.79 -46.98 11.76 21.86 0.26 -46.73 16 12 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 13 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 14 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 15 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 16 C 0.26 10.76 0.98 45.26 0.04 10.80 16 17 O -0.54 -21.91 13.14 -148.98 -1.96 -23.87 16 18 C 0.42 17.56 2.41 71.98 0.17 17.73 16 19 F -0.17 -8.75 13.91 44.97 0.63 -8.12 16 20 F -0.17 -6.03 17.11 44.97 0.77 -5.26 16 21 F -0.18 -7.39 16.67 44.97 0.75 -6.64 16 22 C -0.11 -3.12 6.10 30.42 0.19 -2.94 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 29 H 0.39 17.28 7.83 -74.06 -0.58 16.70 16 30 H 0.15 3.36 8.00 -2.39 -0.02 3.34 16 31 H 0.13 3.05 7.45 -2.39 -0.02 3.03 16 Total: -1.00 -76.28 282.86 3.61 -72.67 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.62 Total: 19.94 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 2.91 Total: 29.60 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.08 Total: -83.49 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.01 Total: -61.66 kcal Atomic # 9 Polarization: -22.16 SS G_CDS: 2.14 Total: -20.02 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -76.28 3.61 -72.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004487010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.780 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds