Wall clock time and date at job start Tue Mar 31 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47351 * 2 1 4 4 N 1.27012 * 125.11858 * 0.02562 * 3 2 1 5 5 N 1.39346 * 114.47656 * 179.97438 * 4 3 2 6 6 C 1.34779 * 125.64712 * 180.02562 * 5 4 3 7 7 O 1.21792 * 119.99650 * 180.02562 * 6 5 4 8 8 C 1.41741 * 120.00312 * 0.02685 * 6 5 4 9 9 H 1.08004 * 120.00056 * 6.43324 * 8 6 5 10 10 C 1.40176 * 120.00577 * 186.43747 * 8 6 5 11 11 N 1.30608 * 120.00638 * 184.82939 * 10 8 6 12 12 Si 1.86805 * 119.99615 * 4.82737 * 10 8 6 13 13 H 1.48492 * 109.47026 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.47053 * 59.99892 * 12 10 8 15 15 H 1.48504 * 109.46957 * 300.00181 * 12 10 8 16 16 C 1.47232 * 108.69933 * 0.26669 * 5 4 3 17 17 O 1.42899 * 110.65892 * 118.17644 * 16 5 4 18 18 C 1.53002 * 110.66190 * 241.29192 * 16 5 4 19 19 F 1.39901 * 109.46795 * 58.54519 * 18 16 5 20 20 F 1.39897 * 109.46889 * 178.54647 * 18 16 5 21 21 F 1.39903 * 109.47006 * 298.54570 * 18 16 5 22 22 C 1.51208 * 125.12152 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46899 * 300.00016 * 1 2 3 25 25 H 1.08994 * 109.47293 * 60.00130 * 1 2 3 26 26 H 1.09001 * 109.46884 * 239.99235 * 2 1 3 27 27 H 1.09007 * 109.46968 * 120.00049 * 2 1 3 28 28 H 0.97007 * 119.99789 * 354.90819 * 11 10 8 29 29 H 0.96704 * 114.00196 * 61.45646 * 17 16 5 30 30 H 1.08995 * 110.55777 * 298.59819 * 22 3 2 31 31 H 1.09003 * 110.55836 * 61.29475 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2965 2.4560 0.0005 5 7 1.9957 3.6613 0.0009 6 6 1.4424 4.8903 0.0019 7 8 2.1542 5.8786 0.0018 8 6 0.0321 5.0327 0.0032 9 1 -0.5985 4.1622 0.1082 10 6 -0.5443 6.3033 -0.1318 11 7 -1.8389 6.4468 -0.0362 12 14 0.5394 7.7916 -0.4485 13 1 -0.3069 9.0074 -0.5505 14 1 1.2858 7.5994 -1.7178 15 1 1.5011 7.9510 0.6719 16 6 3.4388 3.3699 -0.0058 17 8 4.0532 3.8923 -1.1855 18 6 4.1093 3.9337 1.2487 19 9 3.5131 3.3779 2.3857 20 9 5.4712 3.6146 1.2329 21 9 3.9563 5.3241 1.2743 22 6 3.4884 1.8286 -0.0006 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 -2.4080 5.6664 0.0543 29 1 3.9854 4.8530 -1.2719 30 1 3.9891 1.4613 0.8952 31 1 3.9889 1.4600 -0.8960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004487011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:16 Heat of formation + Delta-G solvation = -201.593552 kcal Electronic energy + Delta-G solvation = -23818.839506 eV Core-core repulsion = 19686.219093 eV Total energy + Delta-G solvation = -4132.620413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.78228 -47.37251 -47.13908 -40.32205 -37.37762 -36.21331 -33.58295 -33.16228 -30.73884 -29.87155 -26.98083 -25.79914 -24.12423 -21.91462 -20.49301 -19.67948 -18.65722 -18.20157 -17.96411 -17.58686 -16.18477 -15.34111 -15.12659 -14.45241 -14.34278 -14.17848 -14.03637 -13.92598 -13.73272 -13.70607 -13.48377 -13.45077 -13.26682 -13.10713 -12.78469 -12.41426 -12.09746 -11.89732 -11.48140 -11.41185 -11.05099 -10.68243 -10.49016 -10.32412 -9.85409 -9.28927 -9.17762 -8.22907 -8.11008 -7.27789 -5.23505 2.29821 2.66407 3.10190 3.35872 3.58230 3.70026 3.86422 4.00992 4.02611 4.25844 4.40889 4.42720 4.51649 4.81289 4.96689 5.22598 5.36179 5.37121 5.45487 5.46532 5.68451 5.88418 6.12457 6.28868 6.45963 7.26361 7.43986 7.56212 7.77621 7.89615 8.56792 8.72014 9.65950 10.05358 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.009682 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.778832 B = 2891.139721 C = 4101.599814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C 0.046 3.954 4 N -0.186 5.186 5 N -0.475 5.475 6 C 0.558 3.442 7 O -0.602 6.602 8 C -0.551 4.551 9 H 0.087 0.913 10 C 0.060 3.940 11 N -0.804 5.804 12 Si 1.127 2.873 13 H -0.318 1.318 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.277 3.723 17 O -0.533 6.533 18 C 0.424 3.576 19 F -0.178 7.178 20 F -0.183 7.183 21 F -0.148 7.148 22 C -0.114 4.114 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.284 0.716 29 H 0.401 0.599 30 H 0.107 0.893 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -11.730 0.377 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.150 4.150 4 N 0.007 4.993 5 N -0.305 5.305 6 C 0.379 3.621 7 O -0.494 6.494 8 C -0.585 4.585 9 H 0.105 0.895 10 C -0.161 4.161 11 N -0.430 5.430 12 Si 0.958 3.042 13 H -0.249 1.249 14 H -0.215 1.215 15 H -0.202 1.202 16 C 0.147 3.853 17 O -0.339 6.339 18 C 0.367 3.633 19 F -0.160 7.160 20 F -0.164 7.164 21 F -0.129 7.129 22 C -0.154 4.154 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.254 0.746 30 H 0.125 0.875 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.754 -9.616 0.117 12.353 hybrid contribution 0.854 -1.351 0.561 1.694 sum 8.609 -10.966 0.677 13.958 Atomic orbital electron populations 1.21642 0.93921 1.01249 1.03658 1.20022 0.97084 0.87583 1.03031 1.24957 0.90698 0.96062 1.03270 1.73901 1.25489 0.91694 1.08259 1.50930 0.99929 1.04375 1.75221 1.17030 0.90005 0.77220 0.77858 1.90255 1.63456 1.33135 1.62529 1.21354 0.90427 0.97486 1.49235 0.89510 1.27514 0.97238 1.02832 0.88554 1.70591 1.04928 1.35419 1.32016 0.82421 0.71878 0.70972 0.78943 1.24912 1.21473 1.20180 1.22810 0.84073 0.94923 0.83515 1.86526 1.77803 1.29795 1.39742 1.21429 0.76908 0.78355 0.86619 1.93166 1.83619 1.85379 1.53823 1.93158 1.33730 1.92773 1.96763 1.93384 1.94963 1.28047 1.96494 1.22022 0.98112 0.89040 1.06197 0.92492 0.91914 0.91892 0.89683 0.89708 0.90467 0.74609 0.87454 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.35 37.16 0.35 -1.38 16 2 C -0.04 -0.41 6.53 -27.88 -0.18 -0.59 16 3 C 0.05 0.72 7.19 -79.06 -0.57 0.15 16 4 N -0.19 -3.81 10.30 34.84 0.36 -3.45 16 5 N -0.47 -10.93 3.53 -53.75 -0.19 -11.12 16 6 C 0.56 14.96 7.17 -14.92 -0.11 14.86 16 7 O -0.60 -16.46 8.41 5.11 0.04 -16.42 16 8 C -0.55 -15.54 9.47 -37.52 -0.36 -15.90 16 9 H 0.09 2.49 7.65 -52.48 -0.40 2.09 16 10 C 0.06 1.69 5.52 -17.34 -0.10 1.59 16 11 N -0.80 -22.43 13.64 55.56 0.76 -21.68 16 12 Si 1.13 28.78 25.96 -169.99 -4.41 24.37 16 13 H -0.32 -7.82 7.11 56.52 0.40 -7.42 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.27 -7.27 6.77 56.52 0.38 -6.89 16 16 C 0.28 5.36 0.98 -66.90 -0.07 5.29 16 17 O -0.53 -10.09 13.16 -35.23 -0.46 -10.56 16 18 C 0.42 8.28 2.41 37.16 0.09 8.37 16 19 F -0.18 -3.50 16.64 2.25 0.04 -3.46 16 20 F -0.18 -3.13 17.11 2.25 0.04 -3.09 16 21 F -0.15 -3.32 13.90 2.25 0.03 -3.29 16 22 C -0.11 -1.69 6.08 -27.00 -0.16 -1.85 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.28 7.62 8.72 -40.82 -0.36 7.27 16 29 H 0.40 7.61 7.84 45.56 0.36 7.97 16 30 H 0.11 1.35 7.44 -51.93 -0.39 0.97 16 31 H 0.12 1.52 8.00 -51.93 -0.42 1.10 16 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -31.40 278.69 -2.83 -34.23 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -2.13 Total: -0.26 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.10 Total: 10.53 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.93 Total: -36.25 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.42 Total: -26.97 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 0.11 Total: -9.84 kcal Atomic # 14 Polarization: 28.78 SS G_CDS: -4.41 Total: 24.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.40 -2.83 -34.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004487011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.364 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds