Wall clock time and date at job start Tue Mar 31 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47351 * 2 1 4 4 N 1.27012 * 125.11858 * 0.02562 * 3 2 1 5 5 N 1.39346 * 114.47656 * 179.97438 * 4 3 2 6 6 C 1.34779 * 125.64712 * 180.02562 * 5 4 3 7 7 O 1.21792 * 119.99650 * 180.02562 * 6 5 4 8 8 C 1.41741 * 120.00312 * 0.02685 * 6 5 4 9 9 H 1.08004 * 120.00056 * 6.43324 * 8 6 5 10 10 C 1.40176 * 120.00577 * 186.43747 * 8 6 5 11 11 N 1.30608 * 120.00638 * 184.82939 * 10 8 6 12 12 Si 1.86805 * 119.99615 * 4.82737 * 10 8 6 13 13 H 1.48492 * 109.47026 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.47053 * 59.99892 * 12 10 8 15 15 H 1.48504 * 109.46957 * 300.00181 * 12 10 8 16 16 C 1.47232 * 108.69933 * 0.26669 * 5 4 3 17 17 O 1.42899 * 110.65892 * 118.17644 * 16 5 4 18 18 C 1.53002 * 110.66190 * 241.29192 * 16 5 4 19 19 F 1.39901 * 109.46795 * 58.54519 * 18 16 5 20 20 F 1.39897 * 109.46889 * 178.54647 * 18 16 5 21 21 F 1.39903 * 109.47006 * 298.54570 * 18 16 5 22 22 C 1.51208 * 125.12152 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46899 * 300.00016 * 1 2 3 25 25 H 1.08994 * 109.47293 * 60.00130 * 1 2 3 26 26 H 1.09001 * 109.46884 * 239.99235 * 2 1 3 27 27 H 1.09007 * 109.46968 * 120.00049 * 2 1 3 28 28 H 0.97007 * 119.99789 * 354.90819 * 11 10 8 29 29 H 0.96704 * 114.00196 * 61.45646 * 17 16 5 30 30 H 1.08995 * 110.55777 * 298.59819 * 22 3 2 31 31 H 1.09003 * 110.55836 * 61.29475 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2965 2.4560 0.0005 5 7 1.9957 3.6613 0.0009 6 6 1.4424 4.8903 0.0019 7 8 2.1542 5.8786 0.0018 8 6 0.0321 5.0327 0.0032 9 1 -0.5985 4.1622 0.1082 10 6 -0.5443 6.3033 -0.1318 11 7 -1.8389 6.4468 -0.0362 12 14 0.5394 7.7916 -0.4485 13 1 -0.3069 9.0074 -0.5505 14 1 1.2858 7.5994 -1.7178 15 1 1.5011 7.9510 0.6719 16 6 3.4388 3.3699 -0.0058 17 8 4.0532 3.8923 -1.1855 18 6 4.1093 3.9337 1.2487 19 9 3.5131 3.3779 2.3857 20 9 5.4712 3.6146 1.2329 21 9 3.9563 5.3241 1.2743 22 6 3.4884 1.8286 -0.0006 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 -2.4080 5.6664 0.0543 29 1 3.9854 4.8530 -1.2719 30 1 3.9891 1.4613 0.8952 31 1 3.9889 1.4600 -0.8960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004487011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:16 Heat of formation + Delta-G solvation = -226.481779 kcal Electronic energy + Delta-G solvation = -23819.918741 eV Core-core repulsion = 19686.219093 eV Total energy + Delta-G solvation = -4133.699647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.32090 -48.86895 -48.75176 -41.84127 -39.26801 -37.67416 -35.29580 -34.81792 -32.16711 -31.28423 -28.87297 -27.37934 -25.31345 -23.42865 -22.11029 -21.18972 -20.21160 -19.99952 -19.54501 -19.16970 -18.02830 -16.86067 -16.45768 -16.13645 -15.80262 -15.68418 -15.65846 -15.55909 -15.25489 -15.22942 -15.09898 -14.93919 -14.78682 -14.74069 -14.37429 -14.13357 -13.48941 -13.13717 -13.02223 -12.55540 -12.40142 -12.35738 -12.16668 -11.85003 -11.58266 -11.29756 -11.01108 -10.28205 -9.73170 -9.41549 -7.37357 0.94743 1.11061 1.36076 1.45889 1.63543 1.95176 2.02384 2.25196 2.38653 2.54609 2.59841 3.02553 3.13006 3.23845 3.48386 3.62998 4.23386 4.40507 4.46739 4.54274 4.55829 5.06484 5.17643 5.22680 5.35631 5.41425 5.51011 5.75254 5.86481 6.21239 6.44821 6.98218 7.65293 7.90535 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.009682 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.778832 B = 2891.139721 C = 4101.599814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C 0.085 3.915 4 N -0.252 5.252 5 N -0.494 5.494 6 C 0.564 3.436 7 O -0.615 6.615 8 C -0.577 4.577 9 H 0.069 0.931 10 C 0.032 3.968 11 N -0.819 5.819 12 Si 1.161 2.839 13 H -0.303 1.303 14 H -0.286 1.286 15 H -0.291 1.291 16 C 0.267 3.733 17 O -0.531 6.531 18 C 0.422 3.578 19 F -0.180 7.180 20 F -0.166 7.166 21 F -0.170 7.170 22 C -0.112 4.112 23 H 0.089 0.911 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.282 0.718 29 H 0.398 0.602 30 H 0.140 0.860 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.039 -14.327 0.128 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.110 4.110 4 N -0.058 5.058 5 N -0.322 5.322 6 C 0.382 3.618 7 O -0.508 6.508 8 C -0.612 4.612 9 H 0.087 0.913 10 C -0.186 4.186 11 N -0.446 5.446 12 Si 0.991 3.009 13 H -0.234 1.234 14 H -0.213 1.213 15 H -0.219 1.219 16 C 0.138 3.862 17 O -0.335 6.335 18 C 0.366 3.634 19 F -0.162 7.162 20 F -0.147 7.147 21 F -0.152 7.152 22 C -0.151 4.151 23 H 0.108 0.892 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.251 0.749 30 H 0.157 0.843 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.491 -12.260 -0.137 15.505 hybrid contribution 0.434 -0.810 0.665 1.134 sum 9.924 -13.070 0.528 16.419 Atomic orbital electron populations 1.21640 0.95082 1.02579 1.01217 1.20419 0.96049 0.84607 1.06579 1.26077 0.91028 0.97056 0.96874 1.74046 1.26398 0.91734 1.13639 1.50472 1.01721 1.04479 1.75483 1.16746 0.89617 0.78591 0.76891 1.90224 1.63783 1.34353 1.62461 1.21382 0.91637 0.97050 1.51103 0.91270 1.28205 0.97743 1.04329 0.88326 1.70602 1.05083 1.35366 1.33508 0.81965 0.70756 0.70060 0.78155 1.23351 1.21299 1.21945 1.23267 0.82152 0.97631 0.83187 1.86514 1.77605 1.29653 1.39746 1.21554 0.77696 0.77348 0.86841 1.93159 1.83796 1.85223 1.53991 1.93187 1.32349 1.92489 1.96704 1.93335 1.95185 1.30045 1.96609 1.22303 0.97952 0.85547 1.09302 0.89201 0.94464 0.94367 0.85821 0.85937 0.90683 0.74926 0.84260 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.35 71.98 0.67 -2.43 16 2 C -0.04 -0.63 6.53 29.85 0.19 -0.44 16 3 C 0.08 2.37 7.19 46.83 0.34 2.71 16 4 N -0.25 -10.15 10.30 -41.35 -0.43 -10.57 16 5 N -0.49 -22.65 3.53 -542.12 -1.91 -24.56 16 6 C 0.56 30.81 7.17 85.11 0.61 31.42 16 7 O -0.61 -34.15 8.41 -4.64 -0.04 -34.19 16 8 C -0.58 -33.67 9.47 23.61 0.22 -33.45 16 9 H 0.07 4.17 7.65 -2.91 -0.02 4.14 16 10 C 0.03 1.83 5.52 85.35 0.47 2.31 16 11 N -0.82 -46.84 13.64 21.86 0.30 -46.54 16 12 Si 1.16 59.49 25.96 68.60 1.78 61.27 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 14 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 15 H -0.29 -15.60 6.77 99.48 0.67 -14.93 16 16 C 0.27 9.84 0.98 45.26 0.04 9.88 16 17 O -0.53 -19.23 13.16 -148.98 -1.96 -21.19 16 18 C 0.42 15.88 2.41 71.98 0.17 16.05 16 19 F -0.18 -6.79 16.64 44.97 0.75 -6.04 16 20 F -0.17 -5.26 17.11 44.97 0.77 -4.49 16 21 F -0.17 -7.67 13.90 44.97 0.63 -7.04 16 22 C -0.11 -2.84 6.08 30.42 0.19 -2.65 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.28 15.69 8.72 -92.70 -0.81 14.88 16 29 H 0.40 14.99 7.84 -74.05 -0.58 14.41 16 30 H 0.14 2.75 7.44 -2.39 -0.02 2.73 16 31 H 0.15 3.00 8.00 -2.39 -0.02 2.98 16 Total: -1.00 -70.89 278.69 3.34 -67.55 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 0.54 Total: 2.40 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 2.91 Total: 23.40 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.04 Total: -81.67 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.00 Total: -55.38 kcal Atomic # 9 Polarization: -19.72 SS G_CDS: 2.14 Total: -17.57 kcal Atomic # 14 Polarization: 59.49 SS G_CDS: 1.78 Total: 61.27 kcal Total: -70.89 3.34 -67.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004487011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.927 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds