Wall clock time and date at job start Tue Mar 31 2020 01:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38030 * 119.98686 * 359.72549 * 3 2 1 5 5 C 1.40035 * 119.82417 * 179.74933 * 4 3 2 6 6 C 1.46855 * 120.09902 * 180.25315 * 5 4 3 7 7 O 1.21296 * 120.00366 * 0.27031 * 6 5 4 8 8 C 1.40017 * 119.80174 * 0.52734 * 5 4 3 9 9 C 1.37677 * 119.97825 * 359.72439 * 8 5 4 10 10 C 1.38923 * 120.17518 * 0.02562 * 9 8 5 11 11 O 1.35746 * 119.89755 * 179.97438 * 10 9 8 12 12 C 1.42888 * 117.00379 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47492 * 179.97438 * 12 11 10 14 14 O 1.21218 * 119.99561 * 0.02562 * 13 12 11 15 15 O 1.34307 * 120.00542 * 179.97438 * 13 12 11 16 16 C 1.34913 * 117.00242 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00331 * 0.02562 * 16 15 13 18 18 C 1.38756 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31444 * 119.99593 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00327 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47165 * 59.99965 * 20 18 16 22 22 H 1.48504 * 109.47236 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46950 * 299.99972 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 27 27 H 1.08001 * 120.08537 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.00133 * 180.27162 * 6 5 4 29 29 H 1.07996 * 120.01259 * 179.70648 * 8 5 4 30 30 H 1.07996 * 119.90902 * 180.02562 * 9 8 5 31 31 H 1.09000 * 109.47621 * 300.00311 * 12 11 10 32 32 H 1.09004 * 109.47105 * 60.00315 * 12 11 10 33 33 H 0.96998 * 119.99741 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2946 2.3692 -0.0057 5 6 1.9339 3.6151 -0.0004 6 6 1.1397 4.8504 -0.0008 7 8 -0.0718 4.7926 -0.0009 8 6 3.3326 3.6795 -0.0005 9 6 4.0747 2.5199 0.0000 10 6 3.4395 1.2844 -0.0001 11 8 4.1767 0.1445 -0.0001 12 6 5.5980 0.2912 0.0004 13 6 6.2436 -1.0706 0.0008 14 8 5.5545 -2.0679 0.0002 15 8 7.5822 -1.1793 0.0008 16 6 8.0955 -2.4269 0.0017 17 1 7.4360 -3.2822 0.0020 18 6 9.4707 -2.6115 0.0023 19 7 10.2734 -1.5706 0.0015 20 14 10.1814 -4.3390 0.0029 21 1 9.7228 -5.0633 -1.2097 22 1 11.6646 -4.2641 0.0029 23 1 9.7218 -5.0628 1.2154 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2160 2.3141 -0.0098 28 1 1.6345 5.8105 -0.0011 29 1 3.8292 4.6386 -0.0011 30 1 5.1534 2.5709 0.0003 31 1 5.9071 0.8399 -0.8893 32 1 5.9064 0.8393 0.8907 33 1 11.2348 -1.6995 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005623008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:01 Heat of formation + Delta-G solvation = -175.449149 kcal Electronic energy + Delta-G solvation = -20731.907446 eV Core-core repulsion = 17109.984729 eV Total energy + Delta-G solvation = -3621.922717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86218 -41.07169 -39.97357 -39.55871 -37.71279 -37.12829 -34.36327 -31.91704 -31.50600 -30.01667 -28.42621 -27.27986 -25.27912 -23.62564 -22.49526 -21.66520 -20.05387 -19.71008 -18.75222 -18.31999 -17.72519 -17.70884 -16.78388 -16.66812 -16.55186 -16.25193 -16.04182 -15.88796 -15.75614 -15.20895 -15.02259 -14.27853 -13.82794 -13.69086 -13.67138 -13.50751 -13.14778 -12.52806 -12.47491 -12.34205 -12.20149 -12.16022 -12.06840 -12.01959 -11.11733 -10.78911 -10.73294 -9.89294 -8.99458 -8.58376 -6.38941 -0.39465 0.27434 1.24135 1.27417 1.43759 1.47347 1.56909 1.58105 2.22225 2.27410 2.71669 2.86599 2.92741 3.34601 3.74712 3.76255 4.01477 4.06570 4.07661 4.16807 4.27358 4.29440 4.47214 4.51964 4.63441 4.66221 5.02518 5.11644 5.14936 5.20206 5.55582 5.77301 5.92170 6.44347 6.53350 6.56732 6.86257 7.63551 8.61442 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.003315 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.021818 B = 8445.297358 C = 9232.871088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.060 3.940 4 C -0.122 4.122 5 C -0.207 4.207 6 C 0.399 3.601 7 O -0.511 6.511 8 C -0.036 4.036 9 C -0.191 4.191 10 C 0.111 3.889 11 O -0.312 6.312 12 C 0.090 3.910 13 C 0.393 3.607 14 O -0.573 6.573 15 O -0.230 6.230 16 C -0.426 4.426 17 H 0.080 0.920 18 C 0.003 3.997 19 N -0.896 5.896 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.263 1.263 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.190 0.810 30 H 0.168 0.832 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.737 14.617 -0.004 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.015 3.985 4 C -0.141 4.141 5 C -0.208 4.208 6 C 0.261 3.739 7 O -0.387 6.387 8 C -0.054 4.054 9 C -0.210 4.210 10 C 0.065 3.935 11 O -0.225 6.225 12 C 0.014 3.986 13 C 0.240 3.760 14 O -0.470 6.470 15 O -0.139 6.139 16 C -0.502 4.502 17 H 0.098 0.902 18 C -0.199 4.199 19 N -0.533 5.533 20 Si 0.835 3.165 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.187 1.187 24 H 0.132 0.868 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.181 0.819 29 H 0.207 0.793 30 H 0.185 0.815 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.295 13.994 -0.006 19.303 hybrid contribution 0.157 -1.123 0.001 1.134 sum -13.137 12.871 -0.005 18.392 Atomic orbital electron populations 1.23321 0.76586 1.05384 1.02154 1.86225 1.23269 1.26467 1.89392 1.18462 0.89346 0.85988 1.04736 1.21419 1.00652 0.90749 1.01259 1.21043 0.95716 0.95267 1.08789 1.24649 0.87845 0.93730 0.67633 1.90528 1.19579 1.91089 1.37501 1.21585 0.91400 0.99616 0.92798 1.21525 1.02504 0.89988 1.06955 1.19156 0.88575 0.86565 0.99251 1.86122 1.17983 1.30107 1.88326 1.21890 0.78199 0.91315 1.07159 1.23741 0.82548 0.92154 0.77581 1.90585 1.64664 1.41165 1.50607 1.83833 1.19821 1.33451 1.76773 1.21388 0.91530 0.81522 1.55721 0.90215 1.26497 0.94200 1.04793 0.94375 1.70038 1.04937 1.32234 1.46046 0.84699 0.77743 0.74257 0.79751 1.18742 1.17958 1.18727 0.86833 0.91632 0.91628 0.83572 0.81923 0.79284 0.81490 0.85327 0.85340 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -10.96 10.28 -79.54 -0.82 -11.78 16 3 C 0.06 1.76 6.69 22.52 0.15 1.91 16 4 C -0.12 -2.82 8.58 22.66 0.19 -2.63 16 5 C -0.21 -3.55 5.87 -20.16 -0.12 -3.67 16 6 C 0.40 5.32 11.44 70.08 0.80 6.12 16 7 O -0.51 -11.45 17.16 -3.08 -0.05 -11.50 16 8 C -0.04 -0.49 9.78 22.57 0.22 -0.27 16 9 C -0.19 -3.83 9.01 22.30 0.20 -3.63 16 10 C 0.11 3.31 6.71 22.73 0.15 3.47 16 11 O -0.31 -12.00 9.43 -64.24 -0.61 -12.60 16 12 C 0.09 3.17 5.32 71.24 0.38 3.55 16 13 C 0.39 20.07 7.98 71.24 0.57 20.64 16 14 O -0.57 -33.75 15.74 27.18 0.43 -33.32 16 15 O -0.23 -13.29 9.75 14.98 0.15 -13.15 16 16 C -0.43 -25.78 9.64 67.94 0.66 -25.12 16 17 H 0.08 4.96 6.86 -2.91 -0.02 4.94 16 18 C 0.00 0.14 5.49 84.87 0.47 0.61 16 19 N -0.90 -51.28 13.67 21.63 0.30 -50.99 16 20 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 26 H 0.07 1.18 7.67 -2.38 -0.02 1.16 16 27 H 0.15 3.17 5.87 -2.91 -0.02 3.16 16 28 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 29 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 30 H 0.17 2.59 6.27 -2.91 -0.02 2.57 16 31 H 0.13 3.65 7.65 -2.39 -0.02 3.63 16 32 H 0.13 3.64 7.65 -2.39 -0.02 3.62 16 33 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -85.50 305.40 7.36 -78.14 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.16 Total: 7.85 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 4.78 Total: 2.51 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.30 Total: -50.99 kcal Atomic # 8 Polarization: -81.45 SS G_CDS: -0.90 Total: -82.35 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -85.50 7.36 -78.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005623008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.308 kcal (2) G-P(sol) polarization free energy of solvation -85.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds