Wall clock time and date at job start Tue Mar 31 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00067 * 2 1 4 4 O 1.42903 * 109.47030 * 85.76490 * 3 2 1 5 5 C 1.42899 * 113.99942 * 286.10295 * 4 3 2 6 6 C 1.50700 * 109.47088 * 205.76441 * 3 2 1 7 7 C 1.38469 * 119.38300 * 210.00328 * 6 3 2 8 8 C 1.38366 * 119.51712 * 180.02562 * 7 6 3 9 9 C 1.39984 * 118.36514 * 359.97438 * 8 7 6 10 10 C 1.43193 * 120.61471 * 179.97438 * 9 8 7 11 11 N 7.38696 * 155.98567 * 288.22397 * 2 1 3 12 12 C 1.40657 * 118.76743 * 0.02562 * 9 8 7 13 13 S 1.76195 * 119.82872 * 179.97438 * 12 9 8 14 14 C 1.76208 * 100.00007 * 179.97438 * 13 12 9 15 15 H 1.07996 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99948 * 179.72735 * 14 13 12 17 17 N 1.31545 * 119.99931 * 0.26572 * 16 14 13 18 18 Si 1.86797 * 119.99847 * 180.27499 * 16 14 13 19 19 H 1.48500 * 109.47162 * 89.99345 * 18 16 14 20 20 H 1.48498 * 109.47001 * 209.99711 * 18 16 14 21 21 H 1.48497 * 109.47284 * 329.99695 * 18 16 14 22 22 N 1.31774 * 119.38461 * 30.25458 * 6 3 2 23 23 H 1.08996 * 109.47083 * 186.53424 * 1 2 3 24 24 H 1.08999 * 109.47100 * 306.53481 * 1 2 3 25 25 H 1.09001 * 109.46985 * 66.53287 * 1 2 3 26 26 H 1.08997 * 109.46948 * 325.76797 * 3 2 1 27 27 H 1.08998 * 109.47332 * 76.32614 * 5 4 3 28 28 H 1.09001 * 109.46982 * 196.32613 * 5 4 3 29 29 H 1.09000 * 109.47053 * 316.32951 * 5 4 3 30 30 H 1.07995 * 120.23921 * 0.02562 * 7 6 3 31 31 H 1.08000 * 120.81625 * 179.97438 * 8 7 6 32 32 H 0.97006 * 119.99564 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.1131 1.7811 1.3436 5 6 0.8653 2.1750 1.9178 6 6 3.3835 1.2439 -0.6176 7 6 4.3564 2.1370 -0.2013 8 6 5.6180 2.0833 -0.7668 9 6 5.8660 1.1171 -1.7489 10 6 7.1542 1.0190 -2.3665 11 7 8.1766 0.9401 -2.8554 12 6 4.8261 0.2451 -2.1185 13 16 5.1073 -0.9811 -3.3521 14 6 3.5186 -1.7422 -3.3948 15 1 2.7317 -1.3859 -2.7466 16 6 3.2771 -2.7961 -4.2651 17 7 4.2358 -3.2303 -5.0543 18 14 1.5907 -3.5979 -4.3158 19 1 0.7420 -2.9027 -5.3166 20 1 1.7331 -5.0267 -4.6944 21 1 0.9563 -3.5015 -2.9766 22 7 3.6347 0.3444 -1.5473 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6118 0.8257 25 1 -0.3633 0.4092 -0.9427 26 1 1.3819 1.9829 -0.5781 27 1 0.2973 1.2875 2.1966 28 1 1.0488 2.7822 2.8043 29 1 0.2980 2.7558 1.1906 30 1 4.1320 2.8701 0.5593 31 1 6.3924 2.7699 -0.4581 32 1 4.0671 -3.9671 -5.6623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015906882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:07 Heat of formation + Delta-G solvation = -22.862975 kcal Electronic energy + Delta-G solvation = -19036.641856 eV Core-core repulsion = 15896.381394 eV Total energy + Delta-G solvation = -3140.260462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94001 -38.61859 -36.00979 -35.94309 -32.78871 -32.18946 -31.52928 -28.28224 -26.10168 -25.88070 -25.33945 -23.38552 -22.23279 -18.78013 -17.91061 -17.39248 -17.18568 -16.79293 -15.87645 -15.07286 -15.00558 -14.41117 -14.22393 -13.89890 -13.69927 -13.49402 -13.33244 -12.83156 -12.62248 -12.49074 -12.30299 -11.90370 -11.68489 -11.43417 -11.21931 -11.15085 -11.00851 -10.19516 -10.06793 -9.79248 -9.78322 -9.27500 -8.94988 -8.84320 -8.77933 -6.92406 -6.54933 -4.25131 1.00145 1.70688 2.84888 3.11835 3.14780 3.19667 3.24762 3.28410 3.60206 3.86493 3.96777 4.32839 4.42086 4.71411 4.82788 4.91819 4.97499 5.03236 5.16379 5.25263 5.32459 5.40360 5.55191 5.64189 5.70247 5.76047 5.86741 6.31927 6.44182 6.88043 6.97629 7.15584 7.51628 8.01151 8.36813 8.44002 8.97663 10.52380 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.008105 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.249606 B = 3453.723969 C = 5741.281138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.362 6.362 3 C 0.299 3.701 4 O -0.385 6.385 5 C 0.024 3.976 6 C 0.177 3.823 7 C -0.203 4.203 8 C -0.004 4.004 9 C -0.114 4.114 10 C 0.273 3.727 11 N -0.433 5.433 12 C 0.137 3.863 13 S 0.143 5.857 14 C -0.536 4.536 15 H 0.117 0.883 16 C 0.073 3.927 17 N -0.869 5.869 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.263 1.263 22 N -0.448 5.448 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 10.571 10.906 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.281 6.281 3 C 0.203 3.797 4 O -0.305 6.305 5 C -0.072 4.072 6 C 0.027 3.973 7 C -0.231 4.231 8 C -0.033 4.033 9 C -0.132 4.132 10 C -0.041 4.041 11 N -0.110 5.110 12 C -0.113 4.113 13 S 0.401 5.599 14 C -0.684 4.684 15 H 0.135 0.865 16 C -0.137 4.137 17 N -0.503 5.503 18 Si 0.756 3.244 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.188 1.188 22 N -0.162 5.162 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.768 8.988 8.890 13.895 hybrid contribution -2.363 0.542 1.020 2.630 sum -8.131 9.529 9.910 15.973 Atomic orbital electron populations 1.23091 0.81512 1.03431 0.99978 1.88261 1.19134 1.27291 1.93407 1.21522 0.91290 0.84204 0.82722 1.88042 1.30490 1.82483 1.29480 1.22975 0.86376 0.99244 0.98596 1.20430 0.92837 0.91649 0.92342 1.21259 0.93272 1.03980 1.04611 1.21255 0.96536 0.94117 0.91404 1.16416 0.88588 1.03879 1.04349 1.25276 0.92361 0.93346 0.93155 1.81134 1.11827 1.08648 1.09345 1.24353 0.89321 0.98406 0.99245 1.83818 1.18953 1.24725 1.32381 1.23606 0.97997 1.19768 1.27004 0.86528 1.25220 0.99067 0.95559 0.93813 1.69951 1.32751 1.25973 1.21612 0.85938 0.81312 0.77917 0.79217 1.19960 1.20676 1.18758 1.67920 1.19627 1.19732 1.08919 0.89282 0.93778 0.93646 0.90894 0.93222 0.89492 0.93780 0.84354 0.84534 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.68 101.05 1.08 1.28 16 2 O -0.36 -6.22 10.20 -59.04 -0.60 -6.82 16 3 C 0.30 4.53 3.25 36.01 0.12 4.65 16 4 O -0.38 -5.13 9.54 -59.04 -0.56 -5.69 16 5 C 0.02 0.22 9.76 101.05 0.99 1.20 16 6 C 0.18 3.14 6.52 -82.53 -0.54 2.60 16 7 C -0.20 -3.01 9.36 -39.45 -0.37 -3.38 16 8 C 0.00 -0.06 9.90 -38.88 -0.39 -0.45 16 9 C -0.11 -2.13 5.78 -106.41 -0.61 -2.75 16 10 C 0.27 5.30 14.32 -22.47 -0.32 4.98 16 11 N -0.43 -8.84 18.54 41.84 0.78 -8.07 16 12 C 0.14 3.01 7.00 -16.35 -0.11 2.90 16 13 S 0.14 3.62 20.64 -107.50 -2.22 1.40 16 14 C -0.54 -14.59 9.26 30.94 0.29 -14.31 16 15 H 0.12 3.19 6.54 -52.49 -0.34 2.85 16 16 C 0.07 1.97 5.49 -17.47 -0.10 1.87 16 17 N -0.87 -24.35 13.22 55.49 0.73 -23.62 16 18 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 22 N -0.45 -9.67 7.93 -7.90 -0.06 -9.73 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.41 4.80 -51.93 -0.25 0.16 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 27 H 0.05 0.43 6.27 -51.93 -0.33 0.10 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.32 7.80 -51.93 -0.41 -0.09 16 30 H 0.14 1.65 7.45 -52.49 -0.39 1.26 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -31.35 303.49 -5.29 -36.64 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -2.93 Total: -2.98 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.40 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 1.45 Total: -41.42 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.17 Total: -12.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.22 Total: 1.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.35 -5.29 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015906882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.777 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds