Wall clock time and date at job start Tue Mar 31 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00067 * 2 1 4 4 O 1.42903 * 109.47030 * 85.76490 * 3 2 1 5 5 C 1.42899 * 113.99942 * 286.10295 * 4 3 2 6 6 C 1.50700 * 109.47088 * 205.76441 * 3 2 1 7 7 C 1.38469 * 119.38300 * 210.00328 * 6 3 2 8 8 C 1.38366 * 119.51712 * 180.02562 * 7 6 3 9 9 C 1.39984 * 118.36514 * 359.97438 * 8 7 6 10 10 C 1.43193 * 120.61471 * 179.97438 * 9 8 7 11 11 N 7.38696 * 155.98567 * 288.22397 * 2 1 3 12 12 C 1.40657 * 118.76743 * 0.02562 * 9 8 7 13 13 S 1.76195 * 119.82872 * 179.97438 * 12 9 8 14 14 C 1.76208 * 100.00007 * 179.97438 * 13 12 9 15 15 H 1.07996 * 119.99491 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99948 * 179.72735 * 14 13 12 17 17 N 1.31545 * 119.99931 * 0.26572 * 16 14 13 18 18 Si 1.86797 * 119.99847 * 180.27499 * 16 14 13 19 19 H 1.48500 * 109.47162 * 89.99345 * 18 16 14 20 20 H 1.48498 * 109.47001 * 209.99711 * 18 16 14 21 21 H 1.48497 * 109.47284 * 329.99695 * 18 16 14 22 22 N 1.31774 * 119.38461 * 30.25458 * 6 3 2 23 23 H 1.08996 * 109.47083 * 186.53424 * 1 2 3 24 24 H 1.08999 * 109.47100 * 306.53481 * 1 2 3 25 25 H 1.09001 * 109.46985 * 66.53287 * 1 2 3 26 26 H 1.08997 * 109.46948 * 325.76797 * 3 2 1 27 27 H 1.08998 * 109.47332 * 76.32614 * 5 4 3 28 28 H 1.09001 * 109.46982 * 196.32613 * 5 4 3 29 29 H 1.09000 * 109.47053 * 316.32951 * 5 4 3 30 30 H 1.07995 * 120.23921 * 0.02562 * 7 6 3 31 31 H 1.08000 * 120.81625 * 179.97438 * 8 7 6 32 32 H 0.97006 * 119.99564 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.1131 1.7811 1.3436 5 6 0.8653 2.1750 1.9178 6 6 3.3835 1.2439 -0.6176 7 6 4.3564 2.1370 -0.2013 8 6 5.6180 2.0833 -0.7668 9 6 5.8660 1.1171 -1.7489 10 6 7.1542 1.0190 -2.3665 11 7 8.1766 0.9401 -2.8554 12 6 4.8261 0.2451 -2.1185 13 16 5.1073 -0.9811 -3.3521 14 6 3.5186 -1.7422 -3.3948 15 1 2.7317 -1.3859 -2.7466 16 6 3.2771 -2.7961 -4.2651 17 7 4.2358 -3.2303 -5.0543 18 14 1.5907 -3.5979 -4.3158 19 1 0.7420 -2.9027 -5.3166 20 1 1.7331 -5.0267 -4.6944 21 1 0.9563 -3.5015 -2.9766 22 7 3.6347 0.3444 -1.5473 23 1 -0.3633 -1.0210 0.1169 24 1 -0.3633 0.6118 0.8257 25 1 -0.3633 0.4092 -0.9427 26 1 1.3819 1.9829 -0.5781 27 1 0.2973 1.2875 2.1966 28 1 1.0488 2.7822 2.8043 29 1 0.2980 2.7558 1.1906 30 1 4.1320 2.8701 0.5593 31 1 6.3924 2.7699 -0.4581 32 1 4.0671 -3.9671 -5.6623 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015906882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:07 Heat of formation + Delta-G solvation = -44.346869 kcal Electronic energy + Delta-G solvation = -19037.573468 eV Core-core repulsion = 15896.381394 eV Total energy + Delta-G solvation = -3141.192074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30649 -39.80231 -37.58321 -36.99398 -34.74890 -33.65471 -32.92825 -29.33116 -27.83198 -26.93935 -26.56947 -24.86874 -23.51671 -20.46225 -19.52221 -18.65603 -18.24925 -18.05784 -17.23440 -16.95814 -16.47988 -15.56554 -15.34573 -15.24731 -15.05416 -14.74361 -14.50261 -14.31784 -14.06472 -13.90088 -13.58225 -13.39331 -13.13207 -12.99423 -12.87859 -12.56557 -12.30446 -11.94167 -11.47933 -11.04390 -10.88366 -10.87027 -10.72454 -10.40536 -10.28453 -8.77375 -8.50378 -6.28437 -0.45099 0.31750 1.13940 1.36621 1.39225 1.52073 1.61201 1.86383 2.12289 2.37577 2.75144 2.88155 2.91115 2.98734 3.10524 3.63791 3.79282 3.94757 4.19718 4.28629 4.39085 4.46269 4.48594 4.50625 4.60567 4.78529 4.97150 4.99095 5.09352 5.50143 5.59460 6.02589 6.11516 6.32588 6.44637 6.93139 6.99274 8.59168 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.008105 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.249606 B = 3453.723969 C = 5741.281138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.405 6.405 3 C 0.300 3.700 4 O -0.396 6.396 5 C 0.014 3.986 6 C 0.154 3.846 7 C -0.167 4.167 8 C 0.012 3.988 9 C -0.109 4.109 10 C 0.284 3.716 11 N -0.451 5.451 12 C 0.136 3.864 13 S 0.046 5.954 14 C -0.544 4.544 15 H 0.106 0.894 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.996 3.004 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.261 1.261 22 N -0.481 5.481 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 13.364 13.612 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.325 6.325 3 C 0.204 3.796 4 O -0.317 6.317 5 C -0.081 4.081 6 C 0.008 3.992 7 C -0.192 4.192 8 C -0.017 4.017 9 C -0.126 4.126 10 C -0.031 4.031 11 N -0.128 5.128 12 C -0.115 4.115 13 S 0.300 5.700 14 C -0.692 4.692 15 H 0.124 0.876 16 C -0.184 4.184 17 N -0.546 5.546 18 Si 0.818 3.182 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.186 1.186 22 N -0.194 5.194 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.201 0.799 31 H 0.206 0.794 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.197 11.869 11.681 18.142 hybrid contribution -1.934 0.015 0.511 2.001 sum -9.131 11.884 12.192 19.320 Atomic orbital electron populations 1.23293 0.79428 1.04276 1.01540 1.88197 1.21643 1.28845 1.93785 1.21520 0.89942 0.84188 0.83979 1.87987 1.32873 1.82414 1.28384 1.23270 0.85124 0.99901 0.99777 1.21159 0.95227 0.91272 0.91589 1.21835 0.91936 1.02383 1.03090 1.21851 0.97884 0.92964 0.88986 1.16643 0.87288 1.03903 1.04798 1.25378 0.92296 0.92708 0.92684 1.81138 1.12768 1.09220 1.09708 1.23971 0.90700 0.98030 0.98791 1.83796 1.19910 1.28960 1.37374 1.23586 0.97999 1.20384 1.27199 0.87629 1.26138 1.02775 0.96065 0.93428 1.70066 1.34706 1.26930 1.22880 0.84973 0.76794 0.77190 0.79284 1.18902 1.19887 1.18554 1.67803 1.19696 1.21610 1.10336 0.89351 0.90660 0.93199 0.88574 0.93188 0.87123 0.91758 0.79949 0.79396 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.68 113.37 1.21 1.44 16 2 O -0.40 -13.38 10.20 -126.21 -1.29 -14.67 16 3 C 0.30 8.24 3.25 71.24 0.23 8.47 16 4 O -0.40 -8.92 9.54 -126.21 -1.20 -10.12 16 5 C 0.01 0.20 9.76 113.37 1.11 1.30 16 6 C 0.15 5.09 6.52 42.62 0.28 5.37 16 7 C -0.17 -4.12 9.36 22.36 0.21 -3.91 16 8 C 0.01 0.29 9.90 22.72 0.23 0.51 16 9 C -0.11 -3.92 5.78 -21.02 -0.12 -4.04 16 10 C 0.28 10.82 14.32 88.33 1.26 12.09 16 11 N -0.45 -18.35 18.54 19.00 0.35 -18.00 16 12 C 0.14 6.06 7.00 85.18 0.60 6.66 16 13 S 0.05 2.47 20.64 -56.49 -1.17 1.30 16 14 C -0.54 -31.16 9.26 67.96 0.63 -30.53 16 15 H 0.11 6.07 6.54 -2.91 -0.02 6.05 16 16 C 0.02 1.17 5.49 84.87 0.47 1.64 16 17 N -0.91 -53.61 13.22 21.64 0.29 -53.33 16 18 Si 1.00 43.85 29.55 68.60 2.03 45.87 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 N -0.48 -20.69 7.93 -178.92 -1.42 -22.11 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 1.19 4.80 -2.39 -0.01 1.17 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 2.14 7.56 -2.39 -0.02 2.13 16 27 H 0.05 0.68 6.27 -2.39 -0.01 0.66 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.63 7.80 -2.39 -0.02 0.61 16 30 H 0.18 3.05 7.45 -2.91 -0.02 3.03 16 31 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -73.77 303.49 4.85 -68.91 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.16 Total: 3.15 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.10 Total: -1.01 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -0.78 Total: -93.43 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -2.49 Total: -24.79 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.17 Total: 1.30 kcal Total: -73.77 4.85 -68.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015906882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.568 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds