Wall clock time and date at job start Tue Mar 31 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 117.00127 * 2 1 4 4 C 1.38144 * 119.90921 * 359.97438 * 3 2 1 5 5 C 1.39773 * 119.89684 * 180.02562 * 4 3 2 6 6 C 1.47423 * 120.09240 * 180.02562 * 5 4 3 7 7 O 1.21542 * 120.00202 * 179.97438 * 6 5 4 8 8 O 1.34765 * 119.99926 * 359.97438 * 6 5 4 9 9 C 1.34864 * 117.00005 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00222 * 0.02562 * 9 8 6 11 11 C 1.38798 * 120.00131 * 179.73006 * 9 8 6 12 12 N 1.31424 * 119.99986 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99858 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46896 * 90.00332 * 13 11 9 15 15 H 1.48499 * 109.47039 * 210.00492 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00292 * 13 11 9 17 17 C 1.39754 * 119.81680 * 0.30875 * 5 4 3 18 18 C 1.38335 * 120.04896 * 359.47809 * 17 5 4 19 19 C 1.39147 * 120.01248 * 0.40872 * 18 17 5 20 20 O 1.36049 * 120.73124 * 180.15653 * 19 18 17 21 21 C 1.43150 * 116.74786 * 342.68208 * 20 19 18 22 22 C 1.53468 * 108.25431 * 46.26757 * 21 20 19 23 23 O 1.36164 * 119.23538 * 180.09041 * 18 17 5 24 24 H 1.09000 * 109.47091 * 300.00543 * 1 2 3 25 25 H 1.09004 * 109.46807 * 60.00286 * 1 2 3 26 26 H 1.09003 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.05497 * 0.06663 * 4 3 2 28 28 H 0.97004 * 119.99536 * 179.97438 * 12 11 9 29 29 H 1.08002 * 119.97410 * 179.71059 * 17 5 4 30 30 H 1.08993 * 109.70985 * 286.57117 * 21 20 19 31 31 H 1.09004 * 109.70261 * 165.95371 * 21 20 19 32 32 H 1.09004 * 109.71283 * 180.54023 * 22 21 20 33 33 H 1.08996 * 109.71547 * 59.90444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2923 2.3691 -0.0005 5 6 1.9271 3.6144 -0.0011 6 6 1.1265 4.8522 -0.0011 7 8 1.6803 5.9342 -0.0011 8 8 -0.2194 4.7842 -0.0011 9 6 -0.8916 5.9534 -0.0016 10 1 -0.3499 6.8877 -0.0024 11 6 -2.2796 5.9560 -0.0073 12 7 -2.9346 7.0954 -0.0084 13 14 -3.2165 4.3400 -0.0150 14 1 -3.4706 3.9085 1.3831 15 1 -4.5108 4.5215 -0.7200 16 1 -2.4130 3.3051 -0.7141 17 6 3.3230 3.6827 -0.0076 18 6 4.0735 2.5206 -0.0026 19 6 3.4388 1.2823 0.0003 20 8 4.1625 0.1303 0.0084 21 6 5.5402 0.2322 -0.3669 22 6 6.1527 1.4291 0.3729 23 8 5.4324 2.6066 -0.0072 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2138 2.3120 0.0001 28 1 -3.9046 7.0971 -0.0127 29 1 3.8162 4.6436 -0.0128 30 1 5.6175 0.3864 -1.4431 31 1 6.0658 -0.6809 -0.0872 32 1 7.2018 1.5346 0.0963 33 1 6.0690 1.2783 1.4491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017184407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:57 Heat of formation + Delta-G solvation = -151.205079 kcal Electronic energy + Delta-G solvation = -21779.179894 eV Core-core repulsion = 18158.308479 eV Total energy + Delta-G solvation = -3620.871416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36566 -39.50734 -38.99470 -37.28812 -36.50089 -35.22317 -32.43032 -31.44865 -29.97735 -28.82555 -27.25988 -25.83943 -24.87467 -22.84445 -21.52072 -20.17096 -18.76978 -18.07003 -17.97357 -17.53224 -16.60359 -16.12835 -15.77986 -15.33059 -15.12749 -15.00765 -14.82701 -14.71472 -14.35604 -14.05811 -13.58226 -13.24597 -12.74885 -12.47378 -12.33804 -11.85311 -11.69886 -11.46778 -11.40355 -11.14347 -10.79632 -10.61288 -10.51694 -10.35102 -9.78959 -9.31155 -8.76891 -8.21016 -7.94011 -6.47052 -4.17698 0.93140 1.38182 2.82142 3.01272 3.10563 3.17044 3.24018 3.25626 3.30943 4.06582 4.08970 4.11610 4.16366 4.63934 4.69893 4.76214 5.00566 5.03051 5.05967 5.21581 5.25409 5.28792 5.32846 5.42763 5.57898 5.80607 6.08504 6.24600 6.39604 6.64567 6.76616 7.11752 7.49485 7.64132 7.94985 8.54914 8.90350 9.58967 10.60779 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.005341 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.342537 B = 5241.047523 C = 6362.543885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.306 6.306 3 C 0.126 3.874 4 C -0.164 4.164 5 C -0.043 4.043 6 C 0.447 3.553 7 O -0.531 6.531 8 O -0.241 6.241 9 C -0.373 4.373 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.866 5.866 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.259 1.259 17 C -0.095 4.095 18 C 0.075 3.925 19 C 0.031 3.969 20 O -0.294 6.294 21 C 0.019 3.981 22 C 0.019 3.981 23 O -0.300 6.300 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.152 0.848 28 H 0.282 0.718 29 H 0.151 0.849 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 -17.003 0.009 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.219 6.219 3 C 0.080 3.920 4 C -0.183 4.183 5 C -0.045 4.045 6 C 0.295 3.705 7 O -0.427 6.427 8 O -0.150 6.150 9 C -0.448 4.448 10 H 0.130 0.870 11 C -0.139 4.139 12 N -0.504 5.504 13 Si 0.728 3.272 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.183 1.183 17 C -0.114 4.114 18 C 0.030 3.970 19 C -0.015 4.015 20 O -0.209 6.209 21 C -0.057 4.057 22 C -0.056 4.056 23 O -0.214 6.214 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.169 0.831 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.500 -16.836 0.005 20.969 hybrid contribution -0.593 -0.463 -0.003 0.752 sum 11.908 -17.299 0.002 21.001 Atomic orbital electron populations 1.23161 0.78041 1.03930 1.02211 1.86115 1.21392 1.25481 1.88921 1.17903 0.88408 0.85262 1.00407 1.21391 1.01157 0.90196 1.05531 1.18763 0.91901 0.91583 1.02252 1.20165 0.82115 0.87954 0.80283 1.90694 1.72155 1.29955 1.49881 1.83521 1.17934 1.37060 1.76444 1.20742 0.89582 0.83609 1.50847 0.86967 1.24574 0.95311 0.98453 0.95549 1.69593 1.08958 1.25444 1.46406 0.86246 0.78956 0.82930 0.79048 1.19611 1.20526 1.18333 1.20312 0.91420 0.97386 1.02303 1.18238 0.83021 0.91846 1.03853 1.18114 0.88789 0.85178 1.09433 1.86359 1.21946 1.28078 1.84508 1.23627 0.81375 1.00548 1.00134 1.23649 0.97102 0.84681 1.00211 1.86368 1.14330 1.36315 1.84430 0.92175 0.92166 0.88104 0.83072 0.90797 0.83155 0.90531 0.86166 0.86060 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.60 10.24 -35.17 -0.36 -4.96 16 3 C 0.13 2.07 6.69 -39.18 -0.26 1.81 16 4 C -0.16 -2.90 8.59 -39.04 -0.34 -3.24 16 5 C -0.04 -0.86 5.87 -105.02 -0.62 -1.48 16 6 C 0.45 11.00 7.83 34.47 0.27 11.27 16 7 O -0.53 -14.45 15.58 -19.30 -0.30 -14.75 16 8 O -0.24 -6.35 7.81 -21.76 -0.17 -6.52 16 9 C -0.37 -10.94 10.11 30.94 0.31 -10.63 16 10 H 0.11 3.63 7.09 -52.49 -0.37 3.26 16 11 C 0.07 1.85 5.50 -17.52 -0.10 1.75 16 12 N -0.87 -25.09 13.96 55.49 0.77 -24.31 16 13 Si 0.90 20.58 28.62 -169.99 -4.86 15.72 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 17 C -0.10 -1.71 9.50 -38.98 -0.37 -2.08 16 18 C 0.08 1.20 6.48 -39.21 -0.25 0.95 16 19 C 0.03 0.48 6.52 -38.81 -0.25 0.23 16 20 O -0.29 -4.09 10.16 -44.78 -0.45 -4.54 16 21 C 0.02 0.17 7.26 37.40 0.27 0.44 16 22 C 0.02 0.17 7.26 37.40 0.27 0.44 16 23 O -0.30 -4.10 10.41 -33.05 -0.34 -4.45 16 24 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 25 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.15 2.62 5.81 -52.48 -0.31 2.31 16 28 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.15 2.70 7.64 -52.49 -0.40 2.30 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -33.79 294.39 -4.48 -38.26 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.12 Total: 0.39 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.07 Total: 0.72 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.77 Total: -24.31 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.63 Total: -35.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.72 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.79 -4.48 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017184407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.941 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds