Wall clock time and date at job start Tue Mar 31 2020 01:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35998 * 117.00127 * 2 1 4 4 C 1.38144 * 119.90921 * 359.97438 * 3 2 1 5 5 C 1.39773 * 119.89684 * 180.02562 * 4 3 2 6 6 C 1.47423 * 120.09240 * 180.02562 * 5 4 3 7 7 O 1.21542 * 120.00202 * 179.97438 * 6 5 4 8 8 O 1.34765 * 119.99926 * 359.97438 * 6 5 4 9 9 C 1.34864 * 117.00005 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00222 * 0.02562 * 9 8 6 11 11 C 1.38798 * 120.00131 * 179.73006 * 9 8 6 12 12 N 1.31424 * 119.99986 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99858 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46896 * 90.00332 * 13 11 9 15 15 H 1.48499 * 109.47039 * 210.00492 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00292 * 13 11 9 17 17 C 1.39754 * 119.81680 * 0.30875 * 5 4 3 18 18 C 1.38335 * 120.04896 * 359.47809 * 17 5 4 19 19 C 1.39147 * 120.01248 * 0.40872 * 18 17 5 20 20 O 1.36049 * 120.73124 * 180.15653 * 19 18 17 21 21 C 1.43150 * 116.74786 * 342.68208 * 20 19 18 22 22 C 1.53468 * 108.25431 * 46.26757 * 21 20 19 23 23 O 1.36164 * 119.23538 * 180.09041 * 18 17 5 24 24 H 1.09000 * 109.47091 * 300.00543 * 1 2 3 25 25 H 1.09004 * 109.46807 * 60.00286 * 1 2 3 26 26 H 1.09003 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.05497 * 0.06663 * 4 3 2 28 28 H 0.97004 * 119.99536 * 179.97438 * 12 11 9 29 29 H 1.08002 * 119.97410 * 179.71059 * 17 5 4 30 30 H 1.08993 * 109.70985 * 286.57117 * 21 20 19 31 31 H 1.09004 * 109.70261 * 165.95371 * 21 20 19 32 32 H 1.09004 * 109.71283 * 180.54023 * 22 21 20 33 33 H 1.08996 * 109.71547 * 59.90444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2923 2.3691 -0.0005 5 6 1.9271 3.6144 -0.0011 6 6 1.1265 4.8522 -0.0011 7 8 1.6803 5.9342 -0.0011 8 8 -0.2194 4.7842 -0.0011 9 6 -0.8916 5.9534 -0.0016 10 1 -0.3499 6.8877 -0.0024 11 6 -2.2796 5.9560 -0.0073 12 7 -2.9346 7.0954 -0.0084 13 14 -3.2165 4.3400 -0.0150 14 1 -3.4706 3.9085 1.3831 15 1 -4.5108 4.5215 -0.7200 16 1 -2.4130 3.3051 -0.7141 17 6 3.3230 3.6827 -0.0076 18 6 4.0735 2.5206 -0.0026 19 6 3.4388 1.2823 0.0003 20 8 4.1625 0.1303 0.0084 21 6 5.5402 0.2322 -0.3669 22 6 6.1527 1.4291 0.3729 23 8 5.4324 2.6066 -0.0072 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2138 2.3120 0.0001 28 1 -3.9046 7.0971 -0.0127 29 1 3.8162 4.6436 -0.0128 30 1 5.6175 0.3864 -1.4431 31 1 6.0658 -0.6809 -0.0872 32 1 7.2018 1.5346 0.0963 33 1 6.0690 1.2783 1.4491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017184407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:56 Heat of formation + Delta-G solvation = -174.600735 kcal Electronic energy + Delta-G solvation = -21780.194406 eV Core-core repulsion = 18158.308479 eV Total energy + Delta-G solvation = -3621.885927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.51770 -41.25836 -40.31192 -38.45327 -37.87503 -37.13455 -34.56571 -32.57120 -31.22597 -29.95154 -28.37786 -27.70044 -26.05948 -24.30589 -22.76122 -21.60428 -20.30988 -19.99428 -19.26282 -18.62757 -18.09227 -17.38308 -17.03034 -16.91251 -16.68537 -16.38292 -16.01693 -15.94284 -15.81498 -15.34075 -14.87929 -14.43448 -14.41386 -14.16576 -13.69199 -13.37103 -13.24202 -12.64986 -12.49369 -12.47363 -12.33461 -12.08617 -11.87400 -11.80430 -11.54899 -11.33045 -10.86902 -9.46768 -9.20033 -8.58959 -6.44210 -0.51009 0.07357 1.31202 1.32371 1.51507 1.55239 1.78722 2.00397 2.14184 2.26100 2.44146 2.51076 2.92365 3.25735 3.64949 3.68811 3.84450 4.00549 4.01889 4.18357 4.30329 4.35288 4.38403 4.56505 4.63518 4.70159 4.74065 4.77761 5.08286 5.16166 5.42286 5.69920 5.83389 6.02478 6.34627 6.42246 6.74873 7.47320 8.53462 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.005341 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.342537 B = 5241.047523 C = 6362.543885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.309 6.309 3 C 0.126 3.874 4 C -0.158 4.158 5 C -0.070 4.070 6 C 0.453 3.547 7 O -0.567 6.567 8 O -0.241 6.241 9 C -0.408 4.408 10 H 0.059 0.941 11 C 0.019 3.981 12 N -0.910 5.910 13 Si 0.978 3.022 14 H -0.255 1.255 15 H -0.263 1.263 16 H -0.242 1.242 17 C -0.098 4.098 18 C 0.083 3.917 19 C 0.046 3.954 20 O -0.303 6.303 21 C 0.011 3.989 22 C 0.011 3.989 23 O -0.311 6.311 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.292 0.708 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -21.315 0.005 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.080 3.920 4 C -0.177 4.177 5 C -0.072 4.072 6 C 0.302 3.698 7 O -0.464 6.464 8 O -0.150 6.150 9 C -0.484 4.484 10 H 0.077 0.923 11 C -0.182 4.182 12 N -0.549 5.549 13 Si 0.796 3.204 14 H -0.179 1.179 15 H -0.188 1.188 16 H -0.165 1.165 17 C -0.118 4.118 18 C 0.038 3.962 19 C 0.000 4.000 20 O -0.218 6.218 21 C -0.063 4.063 22 C -0.064 4.064 23 O -0.226 6.226 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.173 0.827 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.506 -21.152 0.000 25.096 hybrid contribution -0.566 0.752 0.002 0.941 sum 12.940 -20.400 0.002 24.158 Atomic orbital electron populations 1.23492 0.76219 1.06276 1.02355 1.86128 1.23249 1.24347 1.88548 1.17902 0.88852 0.85330 0.99924 1.21324 1.01450 0.89736 1.05191 1.18427 0.92113 0.90144 1.06500 1.21164 0.81777 0.89308 0.77508 1.90661 1.72647 1.32060 1.51070 1.83518 1.18613 1.35222 1.77630 1.20395 0.90483 0.82971 1.54529 0.92287 1.25616 0.95568 1.03215 0.93833 1.69689 1.09945 1.28247 1.46985 0.85167 0.77636 0.77363 0.80214 1.17936 1.18757 1.16532 1.20244 0.90875 0.98109 1.02532 1.18048 0.84213 0.91018 1.02961 1.18200 0.89014 0.85778 1.07027 1.86359 1.24337 1.26980 1.84097 1.24100 0.78952 1.02554 1.00718 1.24132 0.98456 0.82948 1.00824 1.86367 1.12931 1.39070 1.84230 0.91954 0.92096 0.84743 0.82731 0.89801 0.84133 0.89782 0.82006 0.82024 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.31 -8.40 10.24 -78.77 -0.81 -9.21 16 3 C 0.13 3.89 6.69 22.53 0.15 4.04 16 4 C -0.16 -5.48 8.59 22.62 0.19 -5.28 16 5 C -0.07 -2.85 5.87 -20.12 -0.12 -2.97 16 6 C 0.45 23.44 7.83 70.24 0.55 23.99 16 7 O -0.57 -33.04 15.58 19.70 0.31 -32.74 16 8 O -0.24 -13.19 7.81 10.90 0.09 -13.10 16 9 C -0.41 -25.40 10.11 67.95 0.69 -24.71 16 10 H 0.06 4.18 7.09 -2.91 -0.02 4.16 16 11 C 0.02 1.07 5.50 84.89 0.47 1.54 16 12 N -0.91 -54.61 13.96 21.63 0.30 -54.31 16 13 Si 0.98 42.02 28.62 68.60 1.96 43.99 16 14 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 15 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.24 -9.65 7.11 99.48 0.71 -8.95 16 17 C -0.10 -3.58 9.50 22.66 0.22 -3.36 16 18 C 0.08 2.53 6.48 22.51 0.15 2.68 16 19 C 0.05 1.36 6.52 22.77 0.15 1.50 16 20 O -0.30 -7.30 10.16 -70.32 -0.71 -8.01 16 21 C 0.01 0.15 7.26 72.14 0.52 0.67 16 22 C 0.01 0.15 7.26 72.14 0.52 0.67 16 23 O -0.31 -7.77 10.41 -83.19 -0.87 -8.64 16 24 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 25 H 0.06 1.24 7.65 -2.39 -0.02 1.22 16 26 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.16 5.18 5.81 -2.91 -0.02 5.16 16 28 H 0.29 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.14 5.29 7.64 -2.91 -0.02 5.27 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.16 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -78.61 294.39 6.03 -72.59 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.16 Total: 9.33 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 4.60 Total: 0.10 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.30 Total: -54.31 kcal Atomic # 8 Polarization: -69.70 SS G_CDS: -2.00 Total: -71.70 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.96 Total: 43.99 kcal Total: -78.61 6.03 -72.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017184407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.013 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds