Wall clock time and date at job start Tue Mar 31 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00154 * 2 1 4 4 C 1.50703 * 109.46868 * 274.71639 * 3 2 1 5 5 H 1.08000 * 120.00464 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99897 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99783 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00273 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46857 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47379 * 120.00199 * 8 6 4 11 11 H 1.48503 * 109.47321 * 240.00404 * 8 6 4 12 12 S 1.65603 * 119.99591 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40057 * 150.24587 * 12 2 1 14 14 O 1.42101 * 106.40452 * 17.32528 * 12 2 1 15 15 C 1.76198 * 107.21702 * 263.78188 * 12 2 1 16 16 C 1.37966 * 120.08119 * 246.88155 * 15 12 2 17 17 C 1.38340 * 120.15379 * 179.97438 * 16 15 12 18 18 C 1.38384 * 120.30586 * 359.97438 * 17 16 15 19 19 C 1.37922 * 120.15172 * 359.97438 * 18 17 16 20 20 C 1.39617 * 120.07801 * 66.84260 * 15 12 2 21 21 C 1.43209 * 120.14600 * 0.04059 * 20 15 12 22 22 N 3.58551 * 51.76703 * 138.49964 * 2 1 3 23 23 H 1.08999 * 109.47001 * 270.00107 * 1 2 3 24 24 H 1.09006 * 109.47143 * 29.99621 * 1 2 3 25 25 H 1.09000 * 109.47751 * 149.99896 * 1 2 3 26 26 H 1.08997 * 109.47328 * 34.71832 * 3 2 1 27 27 H 1.08996 * 109.46931 * 154.72207 * 3 2 1 28 28 H 0.97001 * 119.99895 * 179.97438 * 7 6 4 29 29 H 1.08000 * 119.92194 * 359.97438 * 16 15 12 30 30 H 1.07997 * 119.84915 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.92547 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.07974 * 179.72643 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3475 1.7621 -1.4161 5 1 1.9378 1.1883 -2.2341 6 6 3.0069 2.9466 -1.6671 7 7 3.5054 3.6456 -0.6709 8 14 3.1922 3.5587 -3.4222 9 1 2.5478 2.5970 -4.3524 10 1 2.5412 4.8867 -3.5547 11 1 4.6345 3.6790 -3.7549 12 16 2.2929 -1.4342 -0.0006 13 8 3.5184 -1.1897 -0.6770 14 8 1.3665 -2.4322 -0.4070 15 6 2.7115 -1.7955 1.6723 16 6 4.0319 -1.7868 2.0721 17 6 4.3623 -2.0697 3.3854 18 6 3.3723 -2.3627 4.3069 19 6 2.0482 -2.3739 3.9212 20 6 1.7077 -2.0905 2.5968 21 6 0.3350 -2.1014 2.1888 22 7 -0.7539 -2.1094 1.8662 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6477 2.0057 0.5853 27 1 3.1839 1.1187 0.4388 28 1 3.9696 4.4788 -0.8475 29 1 4.8095 -1.5585 1.3582 30 1 5.3974 -2.0611 3.6931 31 1 3.6371 -2.5823 5.3307 32 1 1.2768 -2.6070 4.6403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019835030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:16 Heat of formation + Delta-G solvation = -2.726129 kcal Electronic energy + Delta-G solvation = -19804.924233 eV Core-core repulsion = 16665.536970 eV Total energy + Delta-G solvation = -3139.387263 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.53582 -37.05094 -36.29987 -35.50106 -35.28503 -32.45871 -31.67147 -31.44980 -27.80796 -25.13229 -24.25505 -23.32632 -22.28708 -19.58409 -18.33984 -17.27784 -16.77636 -16.36562 -15.99506 -15.24291 -15.12984 -14.45582 -14.38132 -14.28238 -13.46143 -13.39269 -13.24286 -12.94787 -12.61986 -12.37643 -12.26552 -12.11549 -11.71983 -11.61042 -11.44848 -11.14938 -11.11389 -10.72842 -10.66079 -10.51069 -10.04925 -9.77645 -9.54947 -9.17664 -8.47089 -8.12503 -6.08661 -4.12425 0.32014 0.81761 0.94939 2.55219 2.80004 3.30933 3.37995 3.39007 3.45320 3.63270 3.71588 4.19421 4.43668 4.44318 4.67598 4.85662 5.05567 5.24060 5.28095 5.35428 5.60708 5.62000 5.87005 5.89615 5.98194 6.07773 6.28443 6.50073 6.52124 7.14764 7.31671 7.35472 7.50958 7.89072 8.16214 8.90429 9.52916 11.00027 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.006315 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.630589 B = 4432.930432 C = 4883.088659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.982 5.982 3 C 0.255 3.745 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.674 3.326 13 O -0.933 6.933 14 O -0.966 6.966 15 C -0.633 4.633 16 C -0.019 4.019 17 C -0.113 4.113 18 C -0.075 4.075 19 C -0.094 4.094 20 C 0.071 3.929 21 C 0.222 3.778 22 N -0.365 5.365 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.155 0.845 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -10.406 11.514 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.823 5.823 3 C 0.133 3.867 4 C -0.566 4.566 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.207 1.207 12 S 2.761 3.239 13 O -0.923 6.923 14 O -0.956 6.956 15 C -0.718 4.718 16 C -0.038 4.038 17 C -0.133 4.133 18 C -0.093 4.093 19 C -0.116 4.116 20 C 0.067 3.933 21 C -0.095 4.095 22 N -0.040 5.040 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.173 0.827 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.779 -10.752 10.371 14.959 hybrid contribution 0.649 0.630 0.084 0.908 sum -0.130 -10.122 10.455 14.553 Atomic orbital electron populations 1.21559 0.79453 1.03861 1.00579 1.57314 1.14309 1.22444 1.88233 1.19156 0.90959 0.78501 0.98055 1.21512 1.36091 1.06306 0.92711 0.91908 1.24925 0.95094 0.96418 0.97559 1.69928 1.37461 1.15274 1.30863 0.86441 0.78015 0.78497 0.84514 1.19591 1.20988 1.20745 1.02685 0.74067 0.73236 0.73952 1.93615 1.44666 1.84638 1.69346 1.93551 1.63498 1.58313 1.80279 1.31775 1.00197 1.12957 1.26887 1.21085 0.94245 0.91381 0.97050 1.21561 1.00372 0.98177 0.93141 1.21354 0.92190 0.95726 1.00079 1.21261 0.97478 0.99004 0.93815 1.15396 0.84235 0.99716 0.93981 1.25609 0.93139 0.95442 0.95262 1.81161 1.11522 1.05990 1.05288 0.94302 0.89859 0.91249 0.94347 0.94362 0.92709 0.82697 0.84260 0.84323 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 8.97 59.85 0.54 2.28 16 2 N -0.98 -20.86 3.16 -123.05 -0.39 -21.25 16 3 C 0.25 6.29 5.07 -5.19 -0.03 6.26 16 4 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 S 2.67 53.57 5.05 -107.50 -0.54 53.03 16 13 O -0.93 -21.13 16.18 -57.17 -0.92 -22.06 16 14 O -0.97 -20.32 15.16 -57.17 -0.87 -21.19 16 15 C -0.63 -10.01 5.95 -39.17 -0.23 -10.24 16 16 C -0.02 -0.25 9.54 -39.64 -0.38 -0.63 16 17 C -0.11 -1.09 10.04 -39.49 -0.40 -1.49 16 18 C -0.08 -0.63 10.03 -39.64 -0.40 -1.03 16 19 C -0.09 -0.96 9.76 -39.17 -0.38 -1.34 16 20 C 0.07 1.00 5.73 -106.92 -0.61 0.39 16 21 C 0.22 3.51 11.48 -22.48 -0.26 3.25 16 22 N -0.36 -6.20 16.71 41.83 0.70 -5.50 16 23 H 0.04 0.67 6.18 -51.93 -0.32 0.35 16 24 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 25 H 0.07 1.30 6.96 -51.93 -0.36 0.94 16 26 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.04 0.97 7.79 -51.93 -0.40 0.57 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.16 2.02 7.33 -52.49 -0.38 1.64 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -33.18 296.52 -7.53 -40.71 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.12 Total: -4.09 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.57 Total: -15.83 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 1.05 Total: -51.63 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.79 Total: -43.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.54 Total: 53.03 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.18 -7.53 -40.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019835030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.984 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds