Wall clock time and date at job start Tue Mar 31 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00154 * 2 1 4 4 C 1.50703 * 109.46868 * 274.71639 * 3 2 1 5 5 H 1.08000 * 120.00464 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99897 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99783 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00273 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46857 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47379 * 120.00199 * 8 6 4 11 11 H 1.48503 * 109.47321 * 240.00404 * 8 6 4 12 12 S 1.65603 * 119.99591 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40057 * 150.24587 * 12 2 1 14 14 O 1.42101 * 106.40452 * 17.32528 * 12 2 1 15 15 C 1.76198 * 107.21702 * 263.78188 * 12 2 1 16 16 C 1.37966 * 120.08119 * 246.88155 * 15 12 2 17 17 C 1.38340 * 120.15379 * 179.97438 * 16 15 12 18 18 C 1.38384 * 120.30586 * 359.97438 * 17 16 15 19 19 C 1.37922 * 120.15172 * 359.97438 * 18 17 16 20 20 C 1.39617 * 120.07801 * 66.84260 * 15 12 2 21 21 C 1.43209 * 120.14600 * 0.04059 * 20 15 12 22 22 N 3.58551 * 51.76703 * 138.49964 * 2 1 3 23 23 H 1.08999 * 109.47001 * 270.00107 * 1 2 3 24 24 H 1.09006 * 109.47143 * 29.99621 * 1 2 3 25 25 H 1.09000 * 109.47751 * 149.99896 * 1 2 3 26 26 H 1.08997 * 109.47328 * 34.71832 * 3 2 1 27 27 H 1.08996 * 109.46931 * 154.72207 * 3 2 1 28 28 H 0.97001 * 119.99895 * 179.97438 * 7 6 4 29 29 H 1.08000 * 119.92194 * 359.97438 * 16 15 12 30 30 H 1.07997 * 119.84915 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.92547 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.07974 * 179.72643 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3475 1.7621 -1.4161 5 1 1.9378 1.1883 -2.2341 6 6 3.0069 2.9466 -1.6671 7 7 3.5054 3.6456 -0.6709 8 14 3.1922 3.5587 -3.4222 9 1 2.5478 2.5970 -4.3524 10 1 2.5412 4.8867 -3.5547 11 1 4.6345 3.6790 -3.7549 12 16 2.2929 -1.4342 -0.0006 13 8 3.5184 -1.1897 -0.6770 14 8 1.3665 -2.4322 -0.4070 15 6 2.7115 -1.7955 1.6723 16 6 4.0319 -1.7868 2.0721 17 6 4.3623 -2.0697 3.3854 18 6 3.3723 -2.3627 4.3069 19 6 2.0482 -2.3739 3.9212 20 6 1.7077 -2.0905 2.5968 21 6 0.3350 -2.1014 2.1888 22 7 -0.7539 -2.1094 1.8662 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6477 2.0057 0.5853 27 1 3.1839 1.1187 0.4388 28 1 3.9696 4.4788 -0.8475 29 1 4.8095 -1.5585 1.3582 30 1 5.3974 -2.0611 3.6931 31 1 3.6371 -2.5823 5.3307 32 1 1.2768 -2.6070 4.6403 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019835030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:15 Heat of formation + Delta-G solvation = -26.140369 kcal Electronic energy + Delta-G solvation = -19805.939551 eV Core-core repulsion = 16665.536970 eV Total energy + Delta-G solvation = -3140.402581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48099 -38.55515 -37.72111 -37.17729 -36.94980 -34.53334 -32.62270 -32.37593 -29.74205 -26.92657 -25.23902 -24.47597 -24.03123 -20.73460 -19.77086 -18.81408 -18.49019 -18.06519 -17.40562 -16.69733 -16.19313 -16.08014 -15.59387 -15.40647 -15.18420 -14.87349 -14.34803 -14.33815 -14.03390 -14.01948 -13.56662 -13.42765 -13.31028 -13.13986 -13.04246 -12.95940 -12.55009 -12.50886 -12.43391 -12.03345 -11.85949 -11.70230 -10.60289 -10.49927 -10.10950 -9.88269 -8.21312 -6.32599 -0.78769 -0.55809 0.01317 1.35816 1.39355 1.41454 1.53375 1.77134 1.91614 2.41239 2.51008 2.60751 2.76917 3.09472 3.22643 3.79163 3.94447 4.02624 4.24915 4.28977 4.41117 4.45298 4.65172 4.77912 4.87423 4.94977 5.13204 5.15203 5.27201 5.38828 5.62407 5.72861 5.81046 6.07615 6.17742 6.74312 7.35972 8.86770 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.006315 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.630589 B = 4432.930432 C = 4883.088659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.993 5.993 3 C 0.270 3.730 4 C -0.549 4.549 5 H 0.050 0.950 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.275 1.275 12 S 2.675 3.325 13 O -0.973 6.973 14 O -0.987 6.987 15 C -0.647 4.647 16 C -0.037 4.037 17 C -0.099 4.099 18 C -0.051 4.051 19 C -0.079 4.079 20 C 0.045 3.955 21 C 0.230 3.770 22 N -0.400 5.400 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.269 0.731 29 H 0.147 0.853 30 H 0.180 0.820 31 H 0.193 0.807 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -11.046 14.175 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.832 5.832 3 C 0.147 3.853 4 C -0.589 4.589 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.200 1.200 12 S 2.769 3.231 13 O -0.964 6.964 14 O -0.977 6.977 15 C -0.739 4.739 16 C -0.057 4.057 17 C -0.119 4.119 18 C -0.069 4.069 19 C -0.100 4.100 20 C 0.040 3.960 21 C -0.086 4.086 22 N -0.075 5.075 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.197 0.803 31 H 0.210 0.790 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.220 -11.377 12.960 17.247 hybrid contribution 0.411 0.728 -0.553 1.002 sum 0.631 -10.649 12.408 16.363 Atomic orbital electron populations 1.21592 0.78510 1.03557 1.01562 1.57208 1.14983 1.21748 1.89286 1.18739 0.90602 0.79632 0.96305 1.21802 1.36470 1.06753 0.93838 0.93180 1.25687 0.94721 0.96547 1.01422 1.69998 1.37803 1.15686 1.32565 0.85540 0.78229 0.78271 0.79873 1.19804 1.19573 1.20039 1.02049 0.73010 0.72506 0.75532 1.93554 1.45748 1.84965 1.72105 1.93515 1.63983 1.58262 1.81980 1.30826 1.02052 1.17137 1.23869 1.21261 0.92868 0.92374 0.99176 1.22048 1.02953 0.95699 0.91170 1.22023 0.90660 0.92123 1.02078 1.21779 0.99553 0.96523 0.92166 1.15611 0.82708 1.02022 0.95655 1.26048 0.93574 0.94433 0.94496 1.81149 1.12676 1.07540 1.06139 0.92661 0.90197 0.91432 0.95205 0.95499 0.92222 0.83564 0.80306 0.78950 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.69 8.97 127.77 1.15 4.84 16 2 N -0.99 -44.02 3.16 -543.23 -1.72 -45.74 16 3 C 0.27 13.87 5.07 85.63 0.43 14.30 16 4 C -0.55 -31.44 9.38 25.60 0.24 -31.20 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 6 C 0.02 0.91 5.46 84.65 0.46 1.37 16 7 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 S 2.68 111.94 5.05 -56.49 -0.29 111.65 16 13 O -0.97 -46.58 16.18 -128.00 -2.07 -48.65 16 14 O -0.99 -43.40 15.16 -128.00 -1.94 -45.34 16 15 C -0.65 -20.30 5.95 22.54 0.13 -20.16 16 16 C -0.04 -0.94 9.54 22.23 0.21 -0.73 16 17 C -0.10 -1.47 10.04 22.33 0.22 -1.24 16 18 C -0.05 -0.55 10.03 22.23 0.22 -0.32 16 19 C -0.08 -1.25 9.76 22.54 0.22 -1.03 16 20 C 0.04 1.19 5.73 -21.36 -0.12 1.07 16 21 C 0.23 7.19 11.48 88.34 1.01 8.21 16 22 N -0.40 -13.67 16.71 19.00 0.32 -13.35 16 23 H 0.05 1.97 6.18 -2.39 -0.01 1.96 16 24 H 0.08 3.13 8.07 -2.38 -0.02 3.11 16 25 H 0.07 2.66 6.96 -2.39 -0.02 2.65 16 26 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 27 H 0.03 1.43 7.79 -2.39 -0.02 1.41 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.15 3.87 7.33 -2.91 -0.02 3.84 16 30 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -75.56 296.52 1.95 -73.61 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 1.15 Total: -1.10 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.19 Total: -24.91 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -1.11 Total: -112.00 kcal Atomic # 8 Polarization: -89.97 SS G_CDS: -4.01 Total: -93.98 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 111.94 SS G_CDS: -0.29 Total: 111.65 kcal Total: -75.56 1.95 -73.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019835030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.469 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds