Wall clock time and date at job start Tue Mar 31 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34087 * 125.79664 * 2 1 4 4 C 1.34161 * 110.78708 * 180.15959 * 3 2 1 5 5 C 1.34323 * 109.05082 * 359.55381 * 4 3 2 6 6 C 1.36036 * 125.78780 * 179.66754 * 2 1 3 7 7 C 1.47908 * 127.13848 * 0.04469 * 6 2 1 8 8 N 1.31252 * 126.47238 * 359.68869 * 7 6 2 9 9 N 1.28503 * 109.98467 * 179.81915 * 8 7 6 10 10 C 1.31291 * 110.10775 * 0.45141 * 9 8 7 11 11 S 1.76203 * 126.39326 * 179.70200 * 10 9 8 12 12 C 1.80997 * 99.99742 * 0.02848 * 11 10 9 13 13 C 1.50703 * 109.47350 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99443 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00173 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00079 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00119 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47295 * 90.00070 * 17 15 13 19 19 H 1.48509 * 109.46794 * 210.00150 * 17 15 13 20 20 H 1.48494 * 109.47233 * 329.99718 * 17 15 13 21 21 N 1.36728 * 107.21699 * 359.73130 * 10 9 8 22 22 N 1.36603 * 127.18510 * 180.02562 * 21 10 9 23 23 H 1.08992 * 109.47347 * 270.33543 * 1 2 3 24 24 H 1.09005 * 109.46728 * 30.32818 * 1 2 3 25 25 H 1.09000 * 109.47194 * 150.32604 * 1 2 3 26 26 H 1.08002 * 125.47906 * 179.82233 * 4 3 2 27 27 H 1.07994 * 126.98810 * 180.26677 * 5 4 3 28 28 H 1.09001 * 109.47350 * 299.99652 * 12 11 10 29 29 H 1.09008 * 109.47519 * 59.99787 * 12 11 10 30 30 H 0.96996 * 120.00114 * 179.97438 * 16 15 13 31 31 H 1.00896 * 111.00262 * 269.97538 * 22 21 10 32 32 H 1.00906 * 111.00166 * 33.92295 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2913 1.0876 0.0000 4 6 3.5871 0.7401 -0.0035 5 6 3.6818 -0.5997 0.0040 6 6 2.3025 -1.1035 0.0064 7 6 1.8682 -2.5174 0.0137 8 7 0.6302 -2.9533 0.0210 9 7 0.6171 -4.2382 0.0220 10 6 1.8453 -4.7022 0.0252 11 16 2.3220 -6.3985 0.0351 12 6 0.6910 -7.1833 0.0380 13 6 0.8544 -8.6814 0.0459 14 1 1.8428 -9.1167 0.0493 15 6 -0.2579 -9.4961 0.0488 16 7 -0.1153 -10.8035 0.0552 17 14 -1.9673 -8.7431 0.0422 18 1 -2.4183 -8.5512 -1.3595 19 1 -2.9101 -9.6494 0.7460 20 1 -1.9325 -7.4302 0.7351 21 7 2.6854 -3.6235 0.0201 22 7 4.0513 -3.6408 0.0205 23 1 -0.3633 0.0060 1.0276 24 1 -0.3633 0.8871 -0.5190 25 1 -0.3633 -0.8929 -0.5088 26 1 4.4203 1.4273 -0.0070 27 1 4.5881 -1.1870 0.0076 28 1 0.1400 -6.8729 0.9258 29 1 0.1415 -6.8827 -0.8542 30 1 -0.8978 -11.3767 0.0576 31 1 4.4127 -3.6403 0.9625 32 1 4.4032 -4.4296 -0.5012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026033469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:55 Heat of formation + Delta-G solvation = 110.742544 kcal Electronic energy + Delta-G solvation = -18707.420656 eV Core-core repulsion = 15605.246515 eV Total energy + Delta-G solvation = -3102.174141 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.81236 -42.32725 -36.36577 -33.85032 -33.17440 -31.96629 -30.19421 -29.57998 -29.39795 -26.70855 -23.61598 -22.71540 -22.45885 -21.30603 -19.83359 -18.51266 -17.47317 -17.22005 -16.91979 -16.32162 -16.24038 -15.18642 -14.79280 -14.31442 -13.80145 -13.51789 -13.17960 -13.02414 -12.93445 -12.88392 -12.52232 -12.00010 -11.59009 -11.41266 -10.93798 -10.89251 -10.66826 -10.49145 -10.26736 -9.91637 -9.66213 -9.44346 -9.34376 -8.79994 -8.46927 -7.10332 -6.28877 -4.35060 1.12950 1.46488 1.82216 2.31213 2.43517 2.75863 2.99680 3.21998 3.24747 3.32549 3.39483 4.04933 4.27763 4.39425 4.66739 4.76926 5.04416 5.12221 5.36790 5.45505 5.52060 5.53290 5.68648 5.84684 5.95069 6.19191 6.27679 6.37601 6.57904 6.61179 6.95996 7.25334 7.42662 8.12601 8.65923 8.75132 9.25937 10.81985 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.004124 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.350455 B = 6787.314896 C = 7605.334470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 O -0.178 6.178 4 C -0.046 4.046 5 C -0.179 4.179 6 C -0.119 4.119 7 C 0.274 3.726 8 N -0.277 5.277 9 N -0.281 5.281 10 C 0.141 3.859 11 S -0.024 6.024 12 C 0.040 3.960 13 C -0.530 4.530 14 H 0.084 0.916 15 C 0.088 3.912 16 N -0.886 5.886 17 Si 0.874 3.126 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.257 1.257 21 N -0.311 5.311 22 N -0.581 5.581 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.206 0.794 27 H 0.161 0.839 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.271 0.729 31 H 0.361 0.639 32 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 21.330 0.572 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.004 4.004 3 O -0.075 6.075 4 C -0.112 4.112 5 C -0.199 4.199 6 C -0.123 4.123 7 C 0.007 3.993 8 N -0.120 5.120 9 N -0.126 5.126 10 C -0.233 4.233 11 S 0.205 5.795 12 C -0.108 4.108 13 C -0.569 4.569 14 H 0.102 0.898 15 C -0.118 4.118 16 N -0.523 5.523 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.181 1.181 21 N -0.095 5.095 22 N -0.212 5.212 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.222 0.778 27 H 0.179 0.821 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.179 0.821 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.503 21.596 0.212 22.863 hybrid contribution -0.228 -0.455 0.444 0.676 sum 7.275 21.141 0.657 22.367 Atomic orbital electron populations 1.20544 0.83804 1.04980 1.04263 1.22585 0.93985 0.82824 1.01029 1.83853 1.16985 1.34524 1.72126 1.23825 0.83759 0.96157 1.07462 1.22856 0.96647 0.94012 1.06398 1.18337 0.93215 0.87207 1.13584 1.21608 0.85643 0.86793 1.05214 1.74319 1.14841 1.03717 1.19083 1.74732 1.15706 1.01895 1.20234 1.28038 0.90353 0.97594 1.07286 1.85475 1.19203 0.83497 1.91314 1.21692 0.88031 0.99287 1.01782 1.20344 0.95911 0.85935 1.54712 0.89823 1.24760 0.99065 0.94528 0.93420 1.69847 1.30955 1.02978 1.48478 0.86827 0.83712 0.80099 0.79357 1.19567 1.20685 1.18133 1.45093 1.01942 1.04914 1.57543 1.59773 0.88464 1.51397 1.21564 0.89535 0.90555 0.87368 0.77756 0.82150 0.92768 0.93199 0.91930 0.82130 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.01 36.00 0.36 -0.48 16 2 C 0.05 0.62 7.37 -35.10 -0.26 0.36 16 3 O -0.18 -1.97 10.55 6.67 0.07 -1.90 16 4 C -0.05 -0.41 12.04 29.35 0.35 -0.06 16 5 C -0.18 -1.93 10.59 -37.48 -0.40 -2.33 16 6 C -0.12 -1.65 6.32 -103.25 -0.65 -2.30 16 7 C 0.27 4.58 7.99 -153.79 -1.23 3.35 16 8 N -0.28 -5.30 10.40 32.60 0.34 -4.97 16 9 N -0.28 -5.98 11.58 30.72 0.36 -5.63 16 10 C 0.14 2.71 8.14 -88.15 -0.72 2.00 16 11 S -0.02 -0.47 21.89 -107.50 -2.35 -2.82 16 12 C 0.04 0.97 4.05 36.01 0.15 1.12 16 13 C -0.53 -14.52 9.68 -34.44 -0.33 -14.86 16 14 H 0.08 2.44 7.95 -52.49 -0.42 2.03 16 15 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 16 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 17 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 21 N -0.31 -4.95 3.84 -10.36 -0.04 -4.99 16 22 N -0.58 -6.50 9.05 60.35 0.55 -5.95 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.11 1.34 6.64 -51.93 -0.34 0.99 16 26 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.16 1.48 7.23 -52.49 -0.38 1.10 16 28 H 0.05 1.34 7.20 -51.92 -0.37 0.96 16 29 H 0.05 1.22 7.57 -51.91 -0.39 0.82 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.36 3.22 9.21 -181.37 -1.67 1.55 16 32 H 0.38 3.83 8.80 -181.36 -1.60 2.23 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -32.70 298.40 -8.92 -41.61 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.61 Total: -0.18 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.83 Total: -10.82 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 1.97 Total: -46.82 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: 0.07 Total: -1.90 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.35 Total: -2.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.70 -8.92 -41.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026033469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.355 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds