Wall clock time and date at job start Tue Mar 31 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34087 * 125.79664 * 2 1 4 4 C 1.34161 * 110.78708 * 180.15959 * 3 2 1 5 5 C 1.34323 * 109.05082 * 359.55381 * 4 3 2 6 6 C 1.36036 * 125.78780 * 179.66754 * 2 1 3 7 7 C 1.47908 * 127.13848 * 0.04469 * 6 2 1 8 8 N 1.31252 * 126.47238 * 359.68869 * 7 6 2 9 9 N 1.28503 * 109.98467 * 179.81915 * 8 7 6 10 10 C 1.31291 * 110.10775 * 0.45141 * 9 8 7 11 11 S 1.76203 * 126.39326 * 179.70200 * 10 9 8 12 12 C 1.80997 * 99.99742 * 0.02848 * 11 10 9 13 13 C 1.50703 * 109.47350 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99443 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00173 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00079 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00119 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47295 * 90.00070 * 17 15 13 19 19 H 1.48509 * 109.46794 * 210.00150 * 17 15 13 20 20 H 1.48494 * 109.47233 * 329.99718 * 17 15 13 21 21 N 1.36728 * 107.21699 * 359.73130 * 10 9 8 22 22 N 1.36603 * 127.18510 * 180.02562 * 21 10 9 23 23 H 1.08992 * 109.47347 * 270.33543 * 1 2 3 24 24 H 1.09005 * 109.46728 * 30.32818 * 1 2 3 25 25 H 1.09000 * 109.47194 * 150.32604 * 1 2 3 26 26 H 1.08002 * 125.47906 * 179.82233 * 4 3 2 27 27 H 1.07994 * 126.98810 * 180.26677 * 5 4 3 28 28 H 1.09001 * 109.47350 * 299.99652 * 12 11 10 29 29 H 1.09008 * 109.47519 * 59.99787 * 12 11 10 30 30 H 0.96996 * 120.00114 * 179.97438 * 16 15 13 31 31 H 1.00896 * 111.00262 * 269.97538 * 22 21 10 32 32 H 1.00906 * 111.00166 * 33.92295 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2913 1.0876 0.0000 4 6 3.5871 0.7401 -0.0035 5 6 3.6818 -0.5997 0.0040 6 6 2.3025 -1.1035 0.0064 7 6 1.8682 -2.5174 0.0137 8 7 0.6302 -2.9533 0.0210 9 7 0.6171 -4.2382 0.0220 10 6 1.8453 -4.7022 0.0252 11 16 2.3220 -6.3985 0.0351 12 6 0.6910 -7.1833 0.0380 13 6 0.8544 -8.6814 0.0459 14 1 1.8428 -9.1167 0.0493 15 6 -0.2579 -9.4961 0.0488 16 7 -0.1153 -10.8035 0.0552 17 14 -1.9673 -8.7431 0.0422 18 1 -2.4183 -8.5512 -1.3595 19 1 -2.9101 -9.6494 0.7460 20 1 -1.9325 -7.4302 0.7351 21 7 2.6854 -3.6235 0.0201 22 7 4.0513 -3.6408 0.0205 23 1 -0.3633 0.0060 1.0276 24 1 -0.3633 0.8871 -0.5190 25 1 -0.3633 -0.8929 -0.5088 26 1 4.4203 1.4273 -0.0070 27 1 4.5881 -1.1870 0.0076 28 1 0.1400 -6.8729 0.9258 29 1 0.1415 -6.8827 -0.8542 30 1 -0.8978 -11.3767 0.0576 31 1 4.4127 -3.6403 0.9625 32 1 4.4032 -4.4296 -0.5012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026033469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:55 Heat of formation + Delta-G solvation = 89.687514 kcal Electronic energy + Delta-G solvation = -18708.333670 eV Core-core repulsion = 15605.246515 eV Total energy + Delta-G solvation = -3103.087156 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.04364 -43.29759 -37.55918 -35.29765 -34.84096 -32.77924 -31.77662 -31.13497 -30.75723 -27.59831 -25.15032 -24.16467 -23.99278 -22.26814 -20.88193 -19.74378 -19.03900 -18.56713 -18.11218 -17.68364 -17.16269 -16.44452 -16.26861 -15.86480 -15.43627 -14.81392 -14.56509 -14.42930 -14.08877 -13.81141 -13.70238 -13.24247 -12.85664 -12.78309 -12.69809 -12.44976 -12.30055 -11.97820 -11.86590 -11.76256 -11.32275 -10.94250 -10.80161 -10.34655 -9.45574 -8.61669 -8.44654 -6.55548 -0.03679 -0.01852 0.88905 1.07695 1.22294 1.26833 1.33114 1.38042 1.48122 1.94480 2.01828 2.25649 2.89629 2.99895 3.44975 3.71655 3.75711 4.20881 4.35263 4.38303 4.61075 4.63460 4.66063 4.70105 4.76508 4.89266 4.99173 5.19610 5.31835 5.45347 5.51151 5.95135 6.11007 6.29006 6.47105 7.09371 7.36162 8.69674 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.004124 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.350455 B = 6787.314896 C = 7605.334470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.052 3.948 3 O -0.179 6.179 4 C -0.026 4.026 5 C -0.192 4.192 6 C -0.156 4.156 7 C 0.288 3.712 8 N -0.305 5.305 9 N -0.318 5.318 10 C 0.124 3.876 11 S 0.016 5.984 12 C 0.035 3.965 13 C -0.535 4.535 14 H 0.055 0.945 15 C 0.038 3.962 16 N -0.927 5.927 17 Si 0.936 3.064 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.256 1.256 21 N -0.305 5.305 22 N -0.567 5.567 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.252 0.748 27 H 0.174 0.826 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.276 0.724 31 H 0.378 0.622 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 24.250 0.619 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 O -0.075 6.075 4 C -0.091 4.091 5 C -0.212 4.212 6 C -0.161 4.161 7 C 0.021 3.979 8 N -0.146 5.146 9 N -0.163 5.163 10 C -0.252 4.252 11 S 0.244 5.756 12 C -0.114 4.114 13 C -0.574 4.574 14 H 0.073 0.927 15 C -0.164 4.164 16 N -0.565 5.565 17 Si 0.759 3.241 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.180 1.180 21 N -0.087 5.087 22 N -0.201 5.201 23 H 0.112 0.888 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.268 0.732 27 H 0.192 0.808 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.197 0.803 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.515 24.528 0.265 25.965 hybrid contribution -0.346 -1.177 0.427 1.299 sum 8.168 23.350 0.692 24.748 Atomic orbital electron populations 1.20563 0.83131 1.05129 1.04813 1.22828 0.94681 0.82896 0.99856 1.83895 1.17921 1.33903 1.71770 1.24710 0.83685 0.96340 1.04352 1.23048 0.95682 0.94953 1.07545 1.18602 0.95376 0.85959 1.16124 1.22116 0.85121 0.88019 1.02646 1.74253 1.16439 1.02897 1.21041 1.74621 1.17214 1.03198 1.21254 1.27852 0.90875 0.97870 1.08637 1.85042 1.15039 0.83581 1.91922 1.21392 0.91268 0.97679 1.01029 1.20503 0.94821 0.87925 1.54162 0.92662 1.25583 1.02975 0.94847 0.92997 1.69953 1.32347 1.04351 1.49834 0.85860 0.79196 0.79342 0.79733 1.18786 1.19607 1.17959 1.45121 1.03412 1.03690 1.56482 1.59898 0.85694 1.51576 1.22902 0.88770 0.88078 0.89465 0.73180 0.80824 0.93545 0.93756 0.91484 0.80298 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.01 71.24 0.71 -0.88 16 2 C 0.05 1.19 7.37 25.17 0.19 1.37 16 3 O -0.18 -3.36 10.55 0.95 0.01 -3.35 16 4 C -0.03 -0.35 12.04 66.92 0.81 0.45 16 5 C -0.19 -3.56 10.59 23.63 0.25 -3.31 16 6 C -0.16 -4.06 6.32 -18.98 -0.12 -4.18 16 7 C 0.29 9.42 7.99 136.25 1.09 10.51 16 8 N -0.30 -11.71 10.40 -50.78 -0.53 -12.24 16 9 N -0.32 -13.66 11.58 -56.73 -0.66 -14.32 16 10 C 0.12 4.70 8.14 179.49 1.46 6.17 16 11 S 0.02 0.61 21.89 -56.49 -1.24 -0.62 16 12 C 0.04 1.72 4.05 71.24 0.29 2.01 16 13 C -0.54 -30.01 9.68 25.60 0.25 -29.77 16 14 H 0.06 3.34 7.95 -2.91 -0.02 3.31 16 15 C 0.04 2.18 5.47 84.65 0.46 2.64 16 16 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 17 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 18 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 21 N -0.31 -9.39 3.84 -186.69 -0.72 -10.10 16 22 N -0.57 -11.53 9.05 37.02 0.34 -11.19 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.09 2.15 6.64 -2.39 -0.02 2.14 16 26 H 0.25 0.86 8.06 -2.91 -0.02 0.84 16 27 H 0.17 2.62 7.23 -2.91 -0.02 2.60 16 28 H 0.05 2.31 7.20 -2.39 -0.02 2.30 16 29 H 0.04 2.19 7.57 -2.39 -0.02 2.17 16 30 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.38 5.81 9.21 -210.56 -1.94 3.87 16 32 H 0.38 7.03 8.80 -210.55 -1.85 5.17 16 Total: -1.00 -72.23 298.40 2.12 -70.11 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -2.66 Total: 6.06 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.38 Total: -14.98 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -1.27 Total: -103.09 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.01 Total: -3.35 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.24 Total: -0.62 kcal Total: -72.23 2.12 -70.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026033469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.799 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds