Wall clock time and date at job start Tue Mar 31 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47303 * 2 1 4 4 N 1.46501 * 109.47268 * 240.00388 * 2 1 3 5 5 C 1.34644 * 119.61882 * 59.72527 * 4 2 1 6 6 O 1.21794 * 120.20957 * 359.97438 * 5 4 2 7 7 C 1.41943 * 119.58939 * 179.74659 * 5 4 2 8 8 S 1.75798 * 131.45855 * 180.20321 * 7 5 4 9 9 C 1.70433 * 91.78146 * 180.29634 * 8 7 5 10 10 C 1.33056 * 111.30032 * 0.02562 * 9 8 7 11 11 C 1.38448 * 119.25476 * 0.52417 * 7 5 4 12 12 N 1.39989 * 118.11708 * 359.74328 * 11 7 5 13 13 C 1.37066 * 119.71254 * 179.97438 * 12 11 7 14 14 H 1.08008 * 120.00234 * 317.74848 * 13 12 11 15 15 C 1.38935 * 119.99856 * 137.75615 * 13 12 11 16 16 N 1.31384 * 119.99893 * 340.24082 * 15 13 12 17 17 Si 1.86798 * 119.99813 * 160.24755 * 15 13 12 18 18 H 1.48497 * 109.47335 * 94.75760 * 17 15 13 19 19 H 1.48504 * 109.46918 * 214.75581 * 17 15 13 20 20 H 1.48498 * 109.47629 * 334.75510 * 17 15 13 21 21 C 1.34224 * 120.57180 * 0.02562 * 12 11 7 22 22 O 1.21577 * 119.15356 * 180.02562 * 21 12 11 23 23 H 1.09003 * 109.46932 * 59.99884 * 1 2 3 24 24 H 1.09004 * 109.47099 * 300.00046 * 1 2 3 25 25 H 1.08992 * 109.47127 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47642 * 120.00337 * 2 1 3 27 27 H 1.09003 * 109.47221 * 299.99938 * 3 2 1 28 28 H 1.09004 * 109.47080 * 59.99942 * 3 2 1 29 29 H 1.09007 * 109.47584 * 179.97438 * 3 2 1 30 30 H 1.07996 * 124.34920 * 180.02562 * 9 8 7 31 31 H 1.07999 * 122.20822 * 180.02562 * 10 9 8 32 32 H 0.97006 * 119.99744 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6838 -0.2271 -2.4153 6 8 0.9789 0.7603 -2.5234 7 6 2.1618 -0.8934 -3.5739 8 16 1.9292 -0.5644 -5.2851 9 6 2.8795 -1.9083 -5.7271 10 6 3.3342 -2.5523 -4.6552 11 6 2.9567 -2.0176 -3.4283 12 7 3.2605 -2.4473 -2.1311 13 6 4.0444 -3.5568 -1.9491 14 1 3.8926 -4.4320 -2.5635 15 6 5.0342 -3.5557 -0.9742 16 7 5.4879 -2.4175 -0.4999 17 14 5.7202 -5.1724 -0.3378 18 1 6.9518 -5.5186 -1.0918 19 1 6.0444 -5.0388 1.1052 20 1 4.7098 -6.2452 -0.5208 21 6 2.7900 -1.7827 -1.0641 22 8 3.0703 -2.1783 0.0509 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 3.0861 -2.1997 -6.7463 31 1 3.9563 -3.4316 -4.7329 32 1 6.1792 -2.4167 0.1805 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032104794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:25 Heat of formation + Delta-G solvation = -6.995042 kcal Electronic energy + Delta-G solvation = -20553.041688 eV Core-core repulsion = 17413.469311 eV Total energy + Delta-G solvation = -3139.572377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26546 -38.22554 -37.38037 -35.03157 -33.87793 -32.89467 -31.27581 -28.74836 -26.78895 -25.34841 -24.58171 -22.65428 -21.42592 -20.07032 -18.82639 -18.59971 -16.11846 -15.97089 -15.77230 -15.48135 -14.99518 -14.31102 -14.02940 -13.66156 -13.32460 -13.24941 -13.12572 -13.03891 -12.34905 -12.17142 -11.89166 -11.59910 -11.52930 -11.22190 -11.17718 -10.84175 -10.72655 -10.52003 -10.42934 -9.76921 -9.38938 -9.15784 -8.79705 -8.61844 -8.20057 -7.14079 -6.63741 -4.43647 1.06657 2.02001 2.53353 2.95580 3.04432 3.15920 3.17405 3.19306 3.38596 3.95806 4.35756 4.50801 4.95369 5.19612 5.39284 5.55476 5.62196 5.68488 5.81032 5.98033 5.98758 6.23545 6.28865 6.30474 6.49371 6.54577 6.58343 6.67344 6.78558 7.10209 7.32492 7.93253 8.29328 8.55396 8.62023 8.95166 9.52781 10.40197 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.009597 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.562019 B = 2916.958645 C = 4406.549778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 C -0.164 4.164 4 N -0.544 5.544 5 C 0.589 3.411 6 O -0.554 6.554 7 C -0.397 4.397 8 S 0.208 5.792 9 C -0.212 4.212 10 C -0.138 4.138 11 C 0.210 3.790 12 N -0.336 5.336 13 C -0.369 4.369 14 H 0.106 0.894 15 C 0.079 3.921 16 N -0.807 5.807 17 Si 0.930 3.070 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.264 1.264 21 C 0.671 3.329 22 O -0.521 6.521 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 1.413 -5.249 6.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.289 5.289 5 C 0.387 3.613 6 O -0.435 6.435 7 C -0.520 4.520 8 S 0.470 5.530 9 C -0.350 4.350 10 C -0.174 4.174 11 C 0.090 3.910 12 N -0.041 5.041 13 C -0.496 4.496 14 H 0.123 0.877 15 C -0.137 4.137 16 N -0.436 5.436 17 Si 0.755 3.245 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.188 1.188 21 C 0.376 3.624 22 O -0.393 6.393 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.836 2.849 -5.124 7.600 hybrid contribution 1.425 -1.936 1.125 2.654 sum -3.411 0.913 -3.999 5.335 Atomic orbital electron populations 1.22175 0.94472 1.02148 1.03415 1.21096 0.94477 0.93257 0.87303 1.22151 1.01383 0.95436 1.03182 1.46227 1.47210 1.27181 1.08256 1.15678 0.80178 0.83681 0.81797 1.90679 1.39571 1.26659 1.86628 1.23026 1.22138 1.07996 0.98871 1.82404 1.49754 1.26136 0.94665 1.24871 1.05010 1.02142 1.03025 1.19321 1.05136 1.03861 0.89056 1.18722 0.93615 0.90644 0.88002 1.40545 1.39686 1.24142 0.99750 1.19343 1.14323 0.91371 1.24556 0.87671 1.25395 0.94147 0.98436 0.95693 1.69870 1.22920 1.26831 1.23960 0.85904 0.78805 0.81208 0.78616 1.20090 1.20236 1.18803 1.15829 0.80134 0.80768 0.85712 1.90816 1.59581 1.66589 1.22335 0.90152 0.91673 0.92902 0.87652 0.90304 0.91766 0.92594 0.81477 0.83568 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.11 37.16 0.34 -2.47 16 2 C 0.14 2.81 3.13 -67.93 -0.21 2.59 16 3 C -0.16 -2.93 9.12 37.16 0.34 -2.59 16 4 N -0.54 -12.63 2.50 -116.95 -0.29 -12.92 16 5 C 0.59 13.44 6.85 -14.90 -0.10 13.34 16 6 O -0.55 -12.58 13.25 5.10 0.07 -12.51 16 7 C -0.40 -8.55 6.48 -38.09 -0.25 -8.79 16 8 S 0.21 3.43 23.08 -107.50 -2.48 0.95 16 9 C -0.21 -3.17 10.86 28.93 0.31 -2.85 16 10 C -0.14 -2.52 9.65 -41.08 -0.40 -2.92 16 11 C 0.21 4.68 6.58 -83.75 -0.55 4.13 16 12 N -0.34 -8.56 2.74 -64.22 -0.18 -8.74 16 13 C -0.37 -9.44 8.67 -14.95 -0.13 -9.57 16 14 H 0.11 2.47 7.87 -52.48 -0.41 2.06 16 15 C 0.08 2.04 4.28 -17.48 -0.07 1.96 16 16 N -0.81 -22.21 11.63 55.49 0.65 -21.56 16 17 Si 0.93 19.79 29.60 -169.99 -5.03 14.76 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.67 17.50 7.42 -87.77 -0.65 16.85 16 22 O -0.52 -14.68 12.97 5.30 0.07 -14.61 16 23 H 0.08 1.47 6.11 -51.93 -0.32 1.15 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.11 2.18 6.81 -51.93 -0.35 1.83 16 27 H 0.08 1.50 6.16 -51.93 -0.32 1.18 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.15 2.47 7.89 -52.49 -0.41 2.05 16 32 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -30.57 283.03 -7.37 -37.95 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.07 Total: 2.75 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.37 Total: 9.68 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.18 Total: -43.22 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: 0.14 Total: -27.12 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.48 Total: 0.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.57 -7.37 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032104794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.952 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds