Wall clock time and date at job start Tue Mar 31 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54511 * 2 1 4 4 O 1.42095 * 110.54512 * 223.24390 * 2 1 3 5 5 C 1.76206 * 104.44692 * 111.62234 * 2 1 3 6 6 N 1.30106 * 124.94936 * 269.97492 * 5 2 1 7 7 C 1.35787 * 109.64359 * 180.02562 * 6 5 2 8 8 C 1.39734 * 133.60143 * 179.97438 * 7 6 5 9 9 C 1.36605 * 119.88806 * 180.02562 * 8 7 6 10 10 C 1.38776 * 120.66622 * 359.97438 * 9 8 7 11 11 C 1.37851 * 120.45485 * 0.03810 * 10 9 8 12 12 C 1.38832 * 119.68776 * 359.97438 * 11 10 9 13 13 N 1.36036 * 124.94869 * 90.00106 * 5 2 1 14 14 C 1.46505 * 126.35096 * 359.94247 * 13 5 2 15 15 C 1.50696 * 109.47091 * 270.01925 * 14 13 5 16 16 H 1.08002 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00197 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99926 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47044 * 60.00260 * 19 17 15 21 21 H 1.48502 * 109.46825 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47162 * 299.99580 * 19 17 15 23 23 H 1.08995 * 109.47383 * 308.37767 * 1 2 3 24 24 H 1.09000 * 109.46922 * 68.37610 * 1 2 3 25 25 H 1.09003 * 109.47142 * 188.37321 * 1 2 3 26 26 H 1.08009 * 120.05649 * 0.29744 * 8 7 6 27 27 H 1.08001 * 119.66343 * 179.97438 * 9 8 7 28 28 H 1.08002 * 119.77372 * 180.02562 * 10 9 8 29 29 H 1.08000 * 120.15788 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.46639 * 30.01863 * 14 13 5 31 31 H 1.08995 * 109.47160 * 150.01574 * 14 13 5 32 32 H 0.96995 * 120.00225 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5863 6 7 2.4400 0.0967 2.6501 7 6 2.7672 -0.7038 3.6970 8 6 3.0667 -0.4599 5.0398 9 6 3.3654 -1.5021 5.8709 10 6 3.3745 -2.8060 5.3958 11 6 3.0825 -3.0704 4.0748 12 6 2.7768 -2.0238 3.2154 13 7 2.4481 -1.9434 1.8769 14 6 2.3297 -3.0660 0.9430 15 6 0.9135 -3.5808 0.9533 16 1 0.1754 -3.1185 1.5919 17 6 0.5602 -4.6429 0.1481 18 7 1.4590 -5.2063 -0.6292 19 14 -1.1952 -5.2815 0.1615 20 1 -2.1202 -4.1955 -0.2509 21 1 -1.3152 -6.4193 -0.7853 22 1 -1.5458 -5.7372 1.5307 23 1 -0.3634 0.6380 0.8056 24 1 -0.3633 0.3787 -0.9553 25 1 -0.3633 -1.0167 0.1497 26 1 3.0578 0.5506 5.4212 27 1 3.5967 -1.3094 6.9081 28 1 3.6123 -3.6192 6.0656 29 1 3.0914 -4.0869 3.7101 30 1 2.5874 -2.7312 -0.0619 31 1 3.0085 -3.8633 1.2455 32 1 1.2106 -5.9536 -1.1953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040487784.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:43 Heat of formation + Delta-G solvation = 5.277047 kcal Electronic energy + Delta-G solvation = -19920.153590 eV Core-core repulsion = 16781.113371 eV Total energy + Delta-G solvation = -3139.040219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62503 -37.07648 -36.81041 -35.70083 -34.21977 -32.50128 -30.08979 -29.41990 -29.01664 -27.36574 -23.61650 -23.52927 -21.75346 -20.36595 -18.59638 -17.19128 -17.03782 -16.69008 -16.20794 -15.98586 -15.25554 -14.75074 -14.59356 -14.34893 -13.65333 -13.48633 -13.04946 -12.89310 -12.66143 -12.33558 -11.81098 -11.75920 -11.66909 -11.56754 -11.36892 -11.20026 -11.06976 -10.77327 -10.67840 -10.46584 -10.33799 -9.67960 -9.46279 -8.76102 -8.16641 -7.67041 -6.39900 -4.52257 0.24641 1.08174 1.92149 2.79007 2.95000 3.09712 3.16413 3.16887 3.34349 4.08007 4.14926 4.22391 4.45127 4.79749 4.93785 5.01346 5.20560 5.27243 5.32914 5.61944 5.71757 5.80883 5.95054 5.98634 6.28650 6.62193 6.76514 6.83686 6.97069 7.11062 7.26638 7.42148 7.62927 7.68838 8.03497 8.52242 9.15558 10.67553 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.009004 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.923220 B = 3108.881234 C = 4589.549368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.525 3.475 3 O -0.921 6.921 4 O -0.907 6.907 5 C -0.261 4.261 6 N -0.421 5.421 7 C 0.022 3.978 8 C -0.059 4.059 9 C -0.138 4.138 10 C -0.106 4.106 11 C -0.095 4.095 12 C 0.073 3.927 13 N -0.396 5.396 14 C 0.198 3.802 15 C -0.560 4.560 16 H 0.065 0.935 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.273 1.273 23 H 0.132 0.868 24 H 0.135 0.865 25 H 0.147 0.853 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 5.767 5.884 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.697 3.303 3 O -0.918 6.918 4 O -0.903 6.903 5 C -0.605 4.605 6 N -0.143 5.143 7 C -0.103 4.103 8 C -0.079 4.079 9 C -0.159 4.159 10 C -0.126 4.126 11 C -0.116 4.116 12 C -0.044 4.044 13 N -0.079 5.079 14 C 0.081 3.919 15 C -0.598 4.598 16 H 0.083 0.917 17 C -0.132 4.132 18 N -0.511 5.511 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.198 1.198 23 H 0.150 0.850 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.379 6.581 4.969 8.255 hybrid contribution -1.306 -1.748 0.712 2.295 sum -1.686 4.833 5.681 7.647 Atomic orbital electron populations 1.30107 1.23980 1.13533 1.11544 1.05086 0.78717 0.74318 0.72142 1.93585 1.77917 1.35494 1.84776 1.93637 1.77660 1.60642 1.58360 1.36601 1.15475 0.88161 1.20243 1.70306 1.15355 1.31802 0.96798 1.19291 1.06977 0.89436 0.94572 1.19934 0.98836 0.99506 0.89638 1.20560 1.03395 0.92412 0.99493 1.20870 1.00533 0.96844 0.94400 1.20157 1.01362 0.97589 0.92466 1.19238 1.02827 0.96749 0.85587 1.45931 1.46874 1.07090 1.07973 1.20662 0.99535 0.82155 0.89565 1.21178 0.93934 1.18033 1.26640 0.91658 1.24908 0.98227 0.95654 0.94366 1.69911 1.34020 1.22866 1.24289 0.86492 0.83518 0.78849 0.78351 1.19695 1.20636 1.19847 0.84985 0.84669 0.83408 0.85693 0.85738 0.85549 0.85339 0.88109 0.92893 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -8.52 10.80 101.05 1.09 -7.43 16 2 S 2.53 44.98 5.87 -107.50 -0.63 44.35 16 3 O -0.92 -17.64 17.91 -57.54 -1.03 -18.68 16 4 O -0.91 -18.84 14.96 -57.54 -0.86 -19.70 16 5 C -0.26 -5.48 7.53 -89.79 -0.68 -6.15 16 6 N -0.42 -8.89 11.23 -11.24 -0.13 -9.02 16 7 C 0.02 0.44 7.23 -84.70 -0.61 -0.17 16 8 C -0.06 -0.96 10.05 -39.61 -0.40 -1.36 16 9 C -0.14 -1.90 9.96 -39.97 -0.40 -2.30 16 10 C -0.11 -1.54 10.03 -39.52 -0.40 -1.94 16 11 C -0.10 -1.72 10.05 -39.50 -0.40 -2.12 16 12 C 0.07 1.53 6.88 -83.98 -0.58 0.95 16 13 N -0.40 -8.87 2.79 -116.10 -0.32 -9.20 16 14 C 0.20 4.84 5.58 -5.19 -0.03 4.81 16 15 C -0.56 -14.11 9.39 -34.44 -0.32 -14.43 16 16 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 18 N -0.88 -23.58 13.29 55.43 0.74 -22.85 16 19 Si 0.90 19.55 29.54 -169.99 -5.02 14.52 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 23 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 24 H 0.13 1.35 8.14 -51.92 -0.42 0.93 16 25 H 0.15 2.15 8.14 -51.92 -0.42 1.73 16 26 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.10 2.59 5.28 -51.93 -0.27 2.31 16 31 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 296.05 15.07 4.46 4.46 Total: -1.00 -32.35 296.05 -8.81 -41.16 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.20 Total: 3.28 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.81 Total: -28.33 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.29 Total: -41.06 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.89 Total: -38.38 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.63 Total: 44.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.35 -8.81 -41.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040487784.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds