Wall clock time and date at job start Tue Mar 31 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47184 * 2 1 4 4 C 1.36938 * 119.99991 * 275.96931 * 3 2 1 5 5 H 1.08000 * 120.00319 * 146.60211 * 4 3 2 6 6 C 1.38817 * 119.99902 * 326.59281 * 4 3 2 7 7 N 1.31613 * 119.99975 * 336.11236 * 6 4 3 8 8 Si 1.86803 * 119.99610 * 156.10390 * 6 4 3 9 9 H 1.48493 * 109.47287 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46766 * 120.00938 * 8 6 4 11 11 H 1.48499 * 109.47033 * 240.00265 * 8 6 4 12 12 S 1.65597 * 120.00209 * 95.96841 * 3 2 1 13 13 O 1.42098 * 106.40463 * 156.45567 * 12 3 2 14 14 O 1.42104 * 106.40189 * 23.54098 * 12 3 2 15 15 C 1.76196 * 107.21991 * 270.00222 * 12 3 2 16 16 C 1.38393 * 119.92081 * 269.97611 * 15 12 3 17 17 C 1.38339 * 120.30097 * 180.02562 * 16 15 12 18 18 C 1.37971 * 120.15611 * 359.67919 * 17 16 15 19 19 C 1.39614 * 119.84023 * 0.59795 * 18 17 16 20 20 C 1.43196 * 120.14644 * 179.70106 * 19 18 17 21 21 N 6.63201 * 51.45038 * 72.42450 * 2 1 3 22 22 C 1.37920 * 119.92837 * 89.99596 * 15 12 3 23 23 H 1.09005 * 109.47006 * 300.00097 * 1 2 3 24 24 H 1.08996 * 109.47019 * 59.99739 * 1 2 3 25 25 H 1.08998 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47002 * 239.99493 * 2 1 3 27 27 H 1.09004 * 109.46736 * 120.00159 * 2 1 3 28 28 H 0.97002 * 120.00025 * 179.97438 * 7 6 4 29 29 H 1.07990 * 119.84481 * 0.02562 * 16 15 12 30 30 H 1.07999 * 119.91952 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.07933 * 180.29808 * 18 17 16 32 32 H 1.07999 * 120.07639 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1303 2.0678 -1.1795 5 1 1.9554 3.1333 -1.2028 6 6 2.4688 1.3944 -2.3452 7 7 3.1247 0.2552 -2.2803 8 14 1.9931 2.1050 -4.0060 9 1 1.2676 3.3853 -3.8072 10 1 3.2182 2.3501 -4.8087 11 1 1.1159 1.1446 -4.7225 12 16 2.4349 2.1121 1.4263 13 8 3.3460 3.1507 1.0939 14 8 2.7469 1.0667 2.3368 15 6 0.9880 2.9003 2.0506 16 6 0.7088 4.2094 1.6991 17 6 -0.4247 4.8360 2.1851 18 6 -1.2886 4.1566 3.0192 19 6 -1.0099 2.8377 3.3825 20 6 -1.8987 2.1285 4.2530 21 7 -2.6030 1.5662 4.9446 22 6 0.1365 2.2114 2.8888 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.3609 -0.2156 -3.0948 29 1 1.3789 4.7441 1.0424 30 1 -0.6364 5.8579 1.9071 31 1 -2.1756 4.6455 3.3940 32 1 0.3559 1.1901 3.1629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044412011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:15 Heat of formation + Delta-G solvation = -27.821825 kcal Electronic energy + Delta-G solvation = -19793.939198 eV Core-core repulsion = 16653.463704 eV Total energy + Delta-G solvation = -3140.475494 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44907 -38.03195 -37.67236 -37.57072 -36.57052 -33.52268 -32.58825 -32.35861 -30.91550 -26.45816 -25.11364 -24.30686 -23.30072 -20.98080 -19.98413 -18.75743 -18.07923 -17.66568 -17.02781 -16.95459 -16.39525 -15.94277 -15.24598 -15.18318 -15.06150 -14.47387 -14.30419 -14.10628 -13.97684 -13.78005 -13.50446 -13.23518 -13.09070 -12.92945 -12.80990 -12.62693 -12.56514 -12.55097 -12.06642 -11.90123 -11.73078 -11.50326 -10.90394 -10.44679 -10.09572 -9.57114 -8.12735 -5.86991 -0.47122 -0.27119 -0.05963 1.49242 1.52918 1.56773 1.67978 1.72323 2.36271 2.59618 2.67225 2.77508 2.96949 3.23765 3.58657 3.75581 3.98670 4.06037 4.36017 4.43220 4.47994 4.73799 4.75993 4.76421 4.96140 4.99439 5.11278 5.17165 5.33006 5.54759 5.64848 5.66760 5.99007 6.31096 6.55157 7.14820 7.49777 8.89171 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.006362 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.794684 B = 4400.170919 C = 4448.878968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.853 5.853 4 C -0.303 4.303 5 H 0.099 0.901 6 C -0.005 4.005 7 N -0.894 5.894 8 Si 0.974 3.026 9 H -0.253 1.253 10 H -0.288 1.288 11 H -0.278 1.278 12 S 2.637 3.363 13 O -1.001 7.001 14 O -1.019 7.019 15 C -0.664 4.664 16 C 0.000 4.000 17 C -0.124 4.124 18 C -0.006 4.006 19 C -0.057 4.057 20 C 0.281 3.719 21 N -0.451 5.451 22 C 0.014 3.986 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.267 0.733 29 H 0.147 0.853 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 8.312 4.448 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.684 5.684 4 C -0.437 4.437 5 H 0.117 0.883 6 C -0.209 4.209 7 N -0.534 5.534 8 Si 0.798 3.202 9 H -0.176 1.176 10 H -0.215 1.215 11 H -0.204 1.204 12 S 2.738 3.262 13 O -0.991 6.991 14 O -1.009 7.009 15 C -0.752 4.752 16 C -0.020 4.020 17 C -0.142 4.142 18 C -0.026 4.026 19 C -0.061 4.061 20 C -0.034 4.034 21 N -0.127 5.127 22 C -0.008 4.008 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.203 0.797 31 H 0.197 0.803 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.056 7.320 5.935 13.782 hybrid contribution 0.071 0.064 -1.013 1.018 sum -9.985 7.384 4.922 13.358 Atomic orbital electron populations 1.22090 0.95802 1.01706 1.01647 1.21409 0.94059 0.83419 1.03532 1.52696 1.77061 1.21076 1.17609 1.19398 1.45376 0.94404 0.84550 0.88347 1.26110 0.94897 0.97184 1.02729 1.70087 1.35319 1.18361 1.29638 0.85168 0.77897 0.79107 0.77983 1.17597 1.21472 1.20373 1.03967 0.74815 0.73408 0.74003 1.93405 1.61677 1.59942 1.84073 1.93393 1.83956 1.56977 1.66609 1.30736 1.23029 1.07750 1.13720 1.21486 0.96327 0.91119 0.93030 1.21661 0.92838 1.02454 0.97278 1.21885 0.98856 0.90287 0.91603 1.16024 0.93954 0.95366 1.00801 1.25598 0.92560 0.92766 0.92483 1.81267 1.11004 1.09058 1.11346 1.20893 0.90381 0.99278 0.90215 0.93101 0.92633 0.91200 0.88822 0.92666 0.92298 0.83508 0.79747 0.80324 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 10.20 71.98 0.73 -4.64 16 2 C 0.10 4.49 6.01 86.38 0.52 5.01 16 3 N -0.85 -39.60 2.85 -343.45 -0.98 -40.58 16 4 C -0.30 -14.79 8.87 84.03 0.75 -14.05 16 5 H 0.10 4.55 7.94 -2.91 -0.02 4.52 16 6 C -0.01 -0.26 4.98 84.86 0.42 0.16 16 7 N -0.89 -47.27 11.27 21.65 0.24 -47.03 16 8 Si 0.97 38.84 29.62 68.60 2.03 40.87 16 9 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 10 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 12 S 2.64 114.83 5.65 -56.49 -0.32 114.52 16 13 O -1.00 -48.78 16.49 -128.00 -2.11 -50.89 16 14 O -1.02 -48.08 15.82 -128.00 -2.02 -50.10 16 15 C -0.66 -21.42 5.97 22.23 0.13 -21.29 16 16 C 0.00 0.01 9.52 22.33 0.21 0.22 16 17 C -0.12 -2.03 10.03 22.23 0.22 -1.81 16 18 C -0.01 -0.10 9.76 22.54 0.22 0.12 16 19 C -0.06 -1.28 5.73 -21.36 -0.12 -1.40 16 20 C 0.28 6.87 15.33 88.33 1.35 8.22 16 21 N -0.45 -12.82 18.54 19.00 0.35 -12.47 16 22 C 0.01 0.41 8.23 22.54 0.19 0.59 16 23 H 0.05 1.60 7.11 -2.38 -0.02 1.58 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.09 4.59 5.31 -2.39 -0.01 4.58 16 27 H 0.05 2.40 6.90 -2.38 -0.02 2.38 16 28 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.15 3.80 7.60 -2.92 -0.02 3.78 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.14 4.07 7.61 -2.91 -0.02 4.05 16 Total: -1.00 -67.00 299.36 2.97 -64.02 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.15 Total: 10.51 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.63 Total: -28.85 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -0.38 Total: -100.07 kcal Atomic # 8 Polarization: -96.86 SS G_CDS: -4.13 Total: -101.00 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 114.83 SS G_CDS: -0.32 Total: 114.52 kcal Total: -67.00 2.97 -64.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044412011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.200 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds