Wall clock time and date at job start Tue Mar 31 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47104 * 2 1 4 4 C 1.36942 * 120.00106 * 275.97278 * 3 2 1 5 5 H 1.07996 * 120.00123 * 146.59893 * 4 3 2 6 6 C 1.38810 * 119.99566 * 326.59712 * 4 3 2 7 7 N 1.31624 * 120.00550 * 336.10540 * 6 4 3 8 8 Si 1.86803 * 119.99951 * 156.10517 * 6 4 3 9 9 H 1.48500 * 109.47251 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47350 * 120.00126 * 8 6 4 11 11 H 1.48506 * 109.47054 * 240.00027 * 8 6 4 12 12 S 1.65599 * 120.00442 * 95.96985 * 3 2 1 13 13 O 1.42098 * 106.40419 * 156.45667 * 12 3 2 14 14 O 1.42102 * 106.40030 * 23.53948 * 12 3 2 15 15 C 1.76197 * 107.22122 * 270.00163 * 12 3 2 16 16 C 1.38370 * 119.84909 * 89.99495 * 15 12 3 17 17 C 1.37944 * 120.15232 * 180.02562 * 16 15 12 18 18 C 1.39638 * 119.84528 * 359.97438 * 17 16 15 19 19 C 1.43193 * 120.14770 * 180.02562 * 18 17 16 20 20 N 8.23139 * 53.25116 * 36.70199 * 2 1 3 21 21 C 1.39630 * 119.69995 * 0.28333 * 18 17 16 22 22 C 1.37951 * 119.84209 * 359.41659 * 21 18 17 23 23 H 1.09001 * 109.47239 * 300.00259 * 1 2 3 24 24 H 1.09002 * 109.46912 * 59.99943 * 1 2 3 25 25 H 1.09000 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47239 * 239.99741 * 2 1 3 27 27 H 1.09003 * 109.46618 * 119.99596 * 2 1 3 28 28 H 0.96997 * 120.00598 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.92015 * 0.02766 * 16 15 12 30 30 H 1.07993 * 120.07772 * 179.97438 * 17 16 15 31 31 H 1.07993 * 120.07712 * 179.70288 * 21 18 17 32 32 H 1.08004 * 119.91871 * 180.28114 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0679 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1246 0.2552 -2.2804 8 14 1.9929 2.1050 -4.0060 9 1 1.2664 3.3848 -3.8071 10 1 3.2179 2.3502 -4.8088 11 1 1.1156 1.1445 -4.7224 12 16 2.4350 2.1122 1.4263 13 8 3.3460 3.1508 1.0938 14 8 2.7470 1.0668 2.3368 15 6 0.9881 2.9004 2.0506 16 6 0.1350 2.2077 2.8915 17 6 -0.9998 2.8185 3.3835 18 6 -1.2863 4.1391 3.0315 19 6 -2.4622 4.7796 3.5390 20 7 -3.3949 5.2880 3.9418 21 6 -0.4239 4.8304 2.1783 22 6 0.7106 4.2093 1.6986 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.3607 -0.2156 -3.0949 29 1 0.3581 1.1866 3.1632 30 1 -1.6650 2.2767 4.0393 31 1 -0.6421 5.8503 1.8983 32 1 1.3810 4.7444 1.0421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044412013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:20 Heat of formation + Delta-G solvation = -8.319068 kcal Electronic energy + Delta-G solvation = -19680.131881 eV Core-core repulsion = 16540.502090 eV Total energy + Delta-G solvation = -3139.629791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.38904 -36.58634 -36.26267 -35.93952 -34.78390 -31.78595 -31.54467 -31.18594 -29.28653 -24.68560 -24.36745 -22.87083 -21.68837 -19.08617 -18.73987 -17.77844 -16.70318 -16.30184 -15.70265 -14.81265 -14.71893 -14.33657 -14.20439 -13.97093 -13.63001 -13.52084 -12.95516 -12.87963 -12.59156 -12.56367 -12.26904 -11.97102 -11.38360 -11.28300 -11.10018 -11.02290 -10.96538 -10.91270 -10.44433 -10.34232 -10.22446 -9.87388 -9.31581 -9.10860 -9.10288 -7.79751 -6.32997 -4.01068 0.34693 1.25434 1.36937 2.44156 2.67287 3.15794 3.25545 3.28757 3.63003 3.64758 4.07848 4.38974 4.62399 4.68184 4.74280 4.97759 5.15730 5.29550 5.49319 5.62266 5.88721 5.90568 6.02481 6.08875 6.18557 6.26281 6.31374 6.53341 6.68408 6.87898 7.23770 7.23978 7.35876 7.73031 8.35551 8.93353 9.30639 10.68346 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.006239 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.145736 B = 4486.604105 C = 4896.795048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.839 5.839 4 C -0.283 4.283 5 H 0.094 0.906 6 C 0.040 3.960 7 N -0.854 5.854 8 Si 0.915 3.085 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 S 2.623 3.377 13 O -0.967 6.967 14 O -0.993 6.993 15 C -0.624 4.624 16 C -0.027 4.027 17 C -0.095 4.095 18 C 0.005 3.995 19 C 0.258 3.742 20 N -0.417 5.417 21 C -0.093 4.093 22 C -0.020 4.020 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.117 0.883 27 H 0.060 0.940 28 H 0.268 0.732 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 2.268 5.024 8.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.671 5.671 4 C -0.420 4.420 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.493 5.493 8 Si 0.741 3.259 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 S 2.719 3.281 13 O -0.957 6.957 14 O -0.982 6.982 15 C -0.707 4.707 16 C -0.046 4.046 17 C -0.116 4.116 18 C 0.001 3.999 19 C -0.058 4.058 20 N -0.092 5.092 21 C -0.115 4.115 22 C -0.039 4.039 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.029 2.982 6.111 9.780 hybrid contribution -0.621 0.318 -0.934 1.166 sum -7.651 3.300 5.177 9.810 Atomic orbital electron populations 1.22209 0.98624 1.00130 1.01337 1.21412 0.91685 0.83809 1.04910 1.52635 1.76429 1.20710 1.17321 1.19147 1.45055 0.94089 0.83677 0.88878 1.25325 0.95009 0.96829 0.99656 1.69973 1.33646 1.16741 1.28970 0.86075 0.78533 0.79232 0.82044 1.19163 1.20751 1.20624 1.05253 0.73838 0.74099 0.74871 1.93453 1.59141 1.59563 1.83524 1.93426 1.82498 1.55641 1.66665 1.31936 1.23674 1.05940 1.09145 1.20895 0.91505 0.99882 0.92270 1.21230 0.97696 0.92849 0.99867 1.16194 0.90135 0.94072 0.99468 1.25758 0.93013 0.93433 0.93564 1.81240 1.10761 1.08501 1.08746 1.21273 0.93841 1.00213 0.96144 1.20949 0.95169 0.92620 0.95117 0.94393 0.92166 0.93321 0.86605 0.92118 0.92187 0.83442 0.84515 0.84429 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.20 37.16 0.38 -2.41 16 2 C 0.11 2.26 6.01 -4.04 -0.02 2.23 16 3 N -0.84 -18.77 2.85 -59.91 -0.17 -18.94 16 4 C -0.28 -6.78 8.87 -15.06 -0.13 -6.91 16 5 H 0.09 2.13 7.94 -52.49 -0.42 1.72 16 6 C 0.04 0.96 4.98 -17.43 -0.09 0.87 16 7 N -0.85 -21.63 11.27 55.49 0.63 -21.00 16 8 Si 0.91 18.84 29.62 -169.99 -5.03 13.80 16 9 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 S 2.62 55.04 5.65 -107.50 -0.61 54.43 16 13 O -0.97 -22.88 16.48 -57.17 -0.94 -23.82 16 14 O -0.99 -22.09 15.81 -57.17 -0.90 -22.99 16 15 C -0.62 -10.26 5.98 -39.49 -0.24 -10.49 16 16 C -0.03 -0.37 8.50 -39.64 -0.34 -0.71 16 17 C -0.10 -1.11 9.76 -39.17 -0.38 -1.49 16 18 C 0.00 0.06 5.73 -106.93 -0.61 -0.56 16 19 C 0.26 3.20 15.33 -22.47 -0.34 2.85 16 20 N -0.42 -5.89 18.54 41.84 0.78 -5.11 16 21 C -0.09 -1.13 9.76 -39.17 -0.38 -1.51 16 22 C -0.02 -0.29 9.50 -39.64 -0.38 -0.66 16 23 H 0.04 0.58 7.11 -51.93 -0.37 0.21 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.12 2.67 5.31 -51.93 -0.28 2.39 16 27 H 0.06 1.22 6.90 -51.93 -0.36 0.86 16 28 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 29 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.15 2.14 7.60 -52.48 -0.40 1.74 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -29.28 299.33 -7.33 -36.61 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.04 Total: 1.30 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.54 Total: -18.79 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 1.23 Total: -45.05 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.85 Total: -46.82 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.61 Total: 54.43 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.28 -7.33 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044412013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds