Wall clock time and date at job start Tue Mar 31 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47104 * 2 1 4 4 C 1.36942 * 120.00106 * 275.97278 * 3 2 1 5 5 H 1.07996 * 120.00123 * 146.59893 * 4 3 2 6 6 C 1.38810 * 119.99566 * 326.59712 * 4 3 2 7 7 N 1.31624 * 120.00550 * 336.10540 * 6 4 3 8 8 Si 1.86803 * 119.99951 * 156.10517 * 6 4 3 9 9 H 1.48500 * 109.47251 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47350 * 120.00126 * 8 6 4 11 11 H 1.48506 * 109.47054 * 240.00027 * 8 6 4 12 12 S 1.65599 * 120.00442 * 95.96985 * 3 2 1 13 13 O 1.42098 * 106.40419 * 156.45667 * 12 3 2 14 14 O 1.42102 * 106.40030 * 23.53948 * 12 3 2 15 15 C 1.76197 * 107.22122 * 270.00163 * 12 3 2 16 16 C 1.38370 * 119.84909 * 89.99495 * 15 12 3 17 17 C 1.37944 * 120.15232 * 180.02562 * 16 15 12 18 18 C 1.39638 * 119.84528 * 359.97438 * 17 16 15 19 19 C 1.43193 * 120.14770 * 180.02562 * 18 17 16 20 20 N 8.23139 * 53.25116 * 36.70199 * 2 1 3 21 21 C 1.39630 * 119.69995 * 0.28333 * 18 17 16 22 22 C 1.37951 * 119.84209 * 359.41659 * 21 18 17 23 23 H 1.09001 * 109.47239 * 300.00259 * 1 2 3 24 24 H 1.09002 * 109.46912 * 59.99943 * 1 2 3 25 25 H 1.09000 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47239 * 239.99741 * 2 1 3 27 27 H 1.09003 * 109.46618 * 119.99596 * 2 1 3 28 28 H 0.96997 * 120.00598 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.92015 * 0.02766 * 16 15 12 30 30 H 1.07993 * 120.07772 * 179.97438 * 17 16 15 31 31 H 1.07993 * 120.07712 * 179.70288 * 21 18 17 32 32 H 1.08004 * 119.91871 * 180.28114 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0679 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1246 0.2552 -2.2804 8 14 1.9929 2.1050 -4.0060 9 1 1.2664 3.3848 -3.8071 10 1 3.2179 2.3502 -4.8088 11 1 1.1156 1.1445 -4.7224 12 16 2.4350 2.1122 1.4263 13 8 3.3460 3.1508 1.0938 14 8 2.7470 1.0668 2.3368 15 6 0.9881 2.9004 2.0506 16 6 0.1350 2.2077 2.8915 17 6 -0.9998 2.8185 3.3835 18 6 -1.2863 4.1391 3.0315 19 6 -2.4622 4.7796 3.5390 20 7 -3.3949 5.2880 3.9418 21 6 -0.4239 4.8304 2.1783 22 6 0.7106 4.2093 1.6986 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.3607 -0.2156 -3.0949 29 1 0.3581 1.1866 3.1632 30 1 -1.6650 2.2767 4.0393 31 1 -0.6421 5.8503 1.8983 32 1 1.3810 4.7444 1.0421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044412013.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:19 Heat of formation + Delta-G solvation = -26.657508 kcal Electronic energy + Delta-G solvation = -19680.927095 eV Core-core repulsion = 16540.502090 eV Total energy + Delta-G solvation = -3140.425005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.45223 -38.00782 -37.66795 -37.60504 -36.55130 -33.50580 -32.69594 -32.23127 -30.87164 -26.44312 -25.52067 -23.91157 -23.27956 -20.40501 -20.08650 -19.32141 -18.32467 -18.01282 -16.95854 -16.45106 -15.93215 -15.77544 -15.24292 -15.19707 -15.10371 -14.63749 -14.39359 -14.07635 -14.01002 -13.80376 -13.55200 -13.49325 -13.06768 -12.89815 -12.78133 -12.62534 -12.52135 -12.27094 -12.04396 -11.90112 -11.78034 -11.46628 -10.88816 -10.40048 -10.12473 -9.55109 -8.12139 -5.86048 -0.76582 -0.22439 0.23606 1.45701 1.52017 1.56168 1.61312 1.67657 2.37462 2.59995 2.61411 2.78690 2.97687 3.25077 3.49798 3.82145 3.89354 4.22558 4.38699 4.49161 4.50993 4.81003 4.81882 4.85684 4.90292 5.03845 5.05074 5.13883 5.37887 5.57198 5.63372 5.70842 6.02963 6.26141 6.56809 7.15175 7.50730 8.89474 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.006239 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.145736 B = 4486.604105 C = 4896.795048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.852 5.852 4 C -0.303 4.303 5 H 0.096 0.904 6 C -0.003 4.003 7 N -0.892 5.892 8 Si 0.971 3.029 9 H -0.256 1.256 10 H -0.288 1.288 11 H -0.277 1.277 12 S 2.637 3.363 13 O -1.004 7.004 14 O -1.013 7.013 15 C -0.635 4.635 16 C -0.033 4.033 17 C -0.078 4.078 18 C 0.015 3.985 19 C 0.280 3.720 20 N -0.442 5.442 21 C -0.080 4.080 22 C -0.032 4.032 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.267 0.733 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 3.234 5.997 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.684 5.684 4 C -0.438 4.438 5 H 0.113 0.887 6 C -0.207 4.207 7 N -0.532 5.532 8 Si 0.795 3.205 9 H -0.180 1.180 10 H -0.215 1.215 11 H -0.202 1.202 12 S 2.738 3.262 13 O -0.994 6.994 14 O -1.003 7.003 15 C -0.724 4.724 16 C -0.052 4.052 17 C -0.099 4.099 18 C 0.012 3.988 19 C -0.035 4.035 20 N -0.117 5.117 21 C -0.101 4.101 22 C -0.051 4.051 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.174 0.826 30 H 0.190 0.810 31 H 0.186 0.814 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.431 3.913 7.029 12.396 hybrid contribution 0.056 0.079 -1.043 1.047 sum -9.375 3.993 5.986 11.818 Atomic orbital electron populations 1.22101 0.95603 1.01861 1.01763 1.21443 0.94251 0.83192 1.03655 1.52691 1.77125 1.21167 1.17457 1.19352 1.45424 0.94303 0.84692 0.88670 1.26039 0.94953 0.97179 1.02505 1.70080 1.35299 1.18280 1.29583 0.85218 0.77909 0.79030 0.78298 1.17986 1.21459 1.20244 1.03945 0.74805 0.73419 0.74055 1.93408 1.61844 1.60061 1.84086 1.93398 1.83798 1.56668 1.66408 1.31123 1.22638 1.06959 1.11674 1.21051 0.91841 1.00346 0.91940 1.21524 0.96793 0.92634 0.98969 1.16244 0.89637 0.94140 0.98800 1.25551 0.92474 0.92695 0.92791 1.81293 1.11564 1.09297 1.09550 1.21497 0.92297 1.01368 0.94950 1.21015 0.96324 0.92057 0.95715 0.92444 0.93153 0.90946 0.89017 0.92229 0.92292 0.82636 0.80975 0.81405 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.20 71.98 0.73 -4.34 16 2 C 0.10 4.26 6.01 86.38 0.52 4.78 16 3 N -0.85 -38.76 2.85 -343.46 -0.98 -39.73 16 4 C -0.30 -14.78 8.87 84.03 0.75 -14.03 16 5 H 0.10 4.45 7.94 -2.91 -0.02 4.42 16 6 C 0.00 -0.14 4.98 84.86 0.42 0.29 16 7 N -0.89 -46.73 11.27 21.65 0.24 -46.48 16 8 Si 0.97 39.01 29.62 68.60 2.03 41.04 16 9 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 10 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 12 S 2.64 111.77 5.65 -56.49 -0.32 111.45 16 13 O -1.00 -48.70 16.48 -128.00 -2.11 -50.81 16 14 O -1.01 -45.50 15.81 -128.00 -2.02 -47.52 16 15 C -0.63 -19.93 5.98 22.33 0.13 -19.80 16 16 C -0.03 -0.82 8.50 22.23 0.19 -0.63 16 17 C -0.08 -1.48 9.76 22.54 0.22 -1.26 16 18 C 0.02 0.30 5.73 -21.36 -0.12 0.18 16 19 C 0.28 5.81 15.33 88.33 1.35 7.17 16 20 N -0.44 -10.98 18.54 19.00 0.35 -10.63 16 21 C -0.08 -1.64 9.76 22.54 0.22 -1.42 16 22 C -0.03 -0.87 9.50 22.23 0.21 -0.66 16 23 H 0.06 1.63 7.11 -2.39 -0.02 1.61 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.09 4.37 5.31 -2.39 -0.01 4.36 16 27 H 0.06 2.44 6.90 -2.39 -0.02 2.43 16 28 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.16 3.64 7.60 -2.91 -0.02 3.61 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.15 4.07 7.60 -2.91 -0.02 4.05 16 Total: -1.00 -64.49 299.33 2.98 -61.51 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.15 Total: 10.90 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.63 Total: -29.73 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -0.38 Total: -96.84 kcal Atomic # 8 Polarization: -94.20 SS G_CDS: -4.13 Total: -98.34 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: 111.77 SS G_CDS: -0.32 Total: 111.45 kcal Total: -64.49 2.98 -61.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044412013.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.855 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds