Wall clock time and date at job start Tue Mar 31 2020 01:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36932 * 120.00226 * 2 1 4 4 H 1.08001 * 120.00285 * 202.32289 * 3 2 1 5 5 C 1.38814 * 119.99882 * 22.32544 * 3 2 1 6 6 N 1.31617 * 120.00302 * 11.15206 * 5 3 2 7 7 Si 1.86799 * 119.99984 * 191.14890 * 5 3 2 8 8 H 1.48498 * 109.47166 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47237 * 119.99827 * 7 5 3 10 10 H 1.48499 * 109.47419 * 239.99862 * 7 5 3 11 11 S 1.65600 * 119.99886 * 180.02562 * 2 1 3 12 12 O 1.42101 * 104.28044 * 153.93063 * 11 2 1 13 13 O 1.42099 * 104.27913 * 26.06830 * 11 2 1 14 14 C 1.81404 * 104.45092 * 269.99789 * 11 2 1 15 15 C 1.50696 * 109.47279 * 179.97438 * 14 11 2 16 16 C 1.38360 * 119.84639 * 90.00425 * 15 14 11 17 17 C 1.37948 * 120.15288 * 179.97438 * 16 15 14 18 18 C 1.39630 * 119.84511 * 359.97438 * 17 16 15 19 19 C 1.43202 * 120.15146 * 180.02562 * 18 17 16 20 20 N 9.23241 * 118.90985 * 163.05482 * 2 1 3 21 21 C 1.39636 * 119.69860 * 0.27618 * 18 17 16 22 22 C 1.37950 * 119.84273 * 359.42384 * 21 18 17 23 23 H 1.09007 * 109.47460 * 274.14907 * 1 2 3 24 24 H 1.09005 * 109.47219 * 34.14518 * 1 2 3 25 25 H 1.08996 * 109.47492 * 154.14762 * 1 2 3 26 26 H 0.96997 * 120.00579 * 180.02562 * 6 5 3 27 27 H 1.09005 * 109.46886 * 59.99720 * 14 11 2 28 28 H 1.09002 * 109.46730 * 300.00475 * 14 11 2 29 29 H 1.08001 * 119.92088 * 0.02562 * 16 15 14 30 30 H 1.07999 * 120.07771 * 179.97438 * 17 16 15 31 31 H 1.08006 * 120.07278 * 179.70371 * 21 18 17 32 32 H 1.07999 * 119.91917 * 180.27734 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1689 1.2209 -0.3552 5 6 1.5336 2.3430 0.4567 6 7 0.3819 2.2696 1.0895 7 14 2.3393 4.0042 0.1731 8 1 3.6191 3.8157 -0.5560 9 1 1.4331 4.8632 -0.6307 10 1 2.6065 4.6546 1.4811 11 16 2.2929 -1.4342 -0.0006 12 8 3.5394 -1.1190 -0.6057 13 8 1.3968 -2.3559 -0.6062 14 6 2.5193 -1.8270 1.7558 15 6 3.2693 -3.1274 1.8872 16 6 4.6516 -3.1220 1.9473 17 6 5.3445 -4.3087 2.0681 18 6 4.6476 -5.5171 2.1301 19 6 5.3603 -6.7528 2.2560 20 7 5.9282 -7.7310 2.3555 21 6 3.2529 -5.5156 2.0635 22 6 2.5724 -4.3210 1.9490 23 1 -0.3634 0.0744 1.0250 24 1 -0.3634 0.8505 -0.5768 25 1 -0.3634 -0.9248 -0.4481 26 1 -0.0488 3.0782 1.4083 27 1 1.5450 -1.9197 2.2359 28 1 3.0866 -1.0297 2.2362 29 1 5.1892 -2.1865 1.9005 30 1 6.4235 -4.3032 2.1146 31 1 2.7080 -6.4471 2.1061 32 1 1.4934 -4.3181 1.9020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:38 Heat of formation + Delta-G solvation = -27.408295 kcal Electronic energy + Delta-G solvation = -19097.544030 eV Core-core repulsion = 15957.086468 eV Total energy + Delta-G solvation = -3140.457562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54407 -37.67214 -37.65552 -37.48818 -36.45312 -34.01488 -33.30005 -32.11458 -28.81809 -28.26061 -25.36494 -23.79959 -23.54690 -20.23246 -19.95649 -18.92750 -18.38442 -17.36189 -16.90125 -16.49194 -16.21126 -16.04974 -15.53989 -15.12113 -15.09458 -14.55475 -14.50815 -14.09900 -14.08483 -13.63065 -13.49929 -13.28046 -13.12810 -12.98083 -12.70690 -12.66879 -12.64190 -12.30905 -12.04892 -12.03951 -11.89357 -11.66295 -11.08323 -10.05993 -10.03903 -9.61233 -8.34216 -5.89863 -0.58585 -0.01129 0.32055 1.52286 1.54599 1.55435 1.67157 1.85361 2.18506 2.51674 2.77211 2.81791 2.95623 3.31822 3.56194 3.68961 3.87887 3.92015 4.30635 4.31018 4.55510 4.59616 4.67098 4.88631 5.00024 5.09071 5.16481 5.23595 5.28692 5.42479 5.48352 5.64394 5.76201 6.36675 6.44805 6.82609 7.28092 8.62801 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.004461 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.410668 B = 6275.321143 C = 6608.782298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.828 5.828 3 C -0.281 4.281 4 H 0.107 0.893 5 C 0.000 4.000 6 N -0.861 5.861 7 Si 0.984 3.016 8 H -0.263 1.263 9 H -0.274 1.274 10 H -0.270 1.270 11 S 2.498 3.502 12 O -1.005 7.005 13 O -1.012 7.012 14 C -0.608 4.608 15 C -0.056 4.056 16 C -0.132 4.132 17 C -0.057 4.057 18 C -0.048 4.048 19 C 0.285 3.715 20 N -0.459 5.459 21 C -0.057 4.057 22 C -0.130 4.130 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.279 0.721 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -4.743 4.794 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.653 5.653 3 C -0.425 4.425 4 H 0.124 0.876 5 C -0.209 4.209 6 N -0.500 5.500 7 Si 0.807 3.193 8 H -0.187 1.187 9 H -0.199 1.199 10 H -0.196 1.196 11 S 2.599 3.401 12 O -0.995 6.995 13 O -1.002 7.002 14 C -0.729 4.729 15 C -0.059 4.059 16 C -0.151 4.151 17 C -0.078 4.078 18 C -0.052 4.052 19 C -0.029 4.029 20 N -0.135 5.135 21 C -0.077 4.077 22 C -0.149 4.149 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.049 -6.873 4.293 8.659 hybrid contribution -0.195 1.396 0.638 1.547 sum 2.855 -5.477 4.932 7.904 Atomic orbital electron populations 1.21268 0.78939 1.00086 1.01770 1.53748 1.13586 1.19149 1.78841 1.20093 1.00899 0.84593 1.36957 0.87554 1.26354 0.96851 1.03380 0.94352 1.70140 1.16143 1.31131 1.32598 0.84981 0.78795 0.76939 0.78543 1.18710 1.19924 1.19564 1.12146 0.73297 0.73843 0.80825 1.93340 1.46302 1.83422 1.76440 1.93335 1.64515 1.65378 1.76953 1.30043 1.08674 1.02173 1.32058 1.19714 0.94492 0.93684 0.97978 1.21327 0.93256 0.99781 1.00700 1.21381 1.01444 0.89716 0.95220 1.16062 0.92742 0.86799 1.09566 1.25636 0.92499 0.92444 0.92313 1.81237 1.09625 1.11909 1.10754 1.21404 0.91807 0.99351 0.95136 1.21331 1.01733 0.91155 1.00662 0.92749 0.92001 0.92676 0.91063 0.84249 0.84544 0.83686 0.82231 0.82041 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.37 8.90 127.77 1.14 6.50 16 2 N -0.83 -37.88 3.24 -364.91 -1.18 -39.06 16 3 C -0.28 -13.44 9.40 84.03 0.79 -12.65 16 4 H 0.11 5.17 7.08 -2.91 -0.02 5.14 16 5 C 0.00 -0.01 5.13 84.86 0.44 0.43 16 6 N -0.86 -39.51 10.57 21.65 0.23 -39.28 16 7 Si 0.98 36.12 29.57 68.60 2.03 38.15 16 8 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 9 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 10 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 11 S 2.50 106.28 5.37 -56.49 -0.30 105.98 16 12 O -1.01 -48.37 16.77 -127.65 -2.14 -50.51 16 13 O -1.01 -46.15 16.54 -127.65 -2.11 -48.26 16 14 C -0.61 -19.94 6.30 71.23 0.45 -19.49 16 15 C -0.06 -1.65 5.15 -19.81 -0.10 -1.75 16 16 C -0.13 -3.47 9.68 22.23 0.22 -3.25 16 17 C -0.06 -1.25 9.76 22.54 0.22 -1.03 16 18 C -0.05 -1.05 5.73 -21.36 -0.12 -1.17 16 19 C 0.29 6.71 15.33 88.34 1.35 8.06 16 20 N -0.46 -12.61 18.53 19.00 0.35 -12.26 16 21 C -0.06 -1.20 9.76 22.54 0.22 -0.98 16 22 C -0.13 -3.29 9.68 22.23 0.22 -3.08 16 23 H 0.05 2.27 7.42 -2.38 -0.02 2.25 16 24 H 0.06 2.75 7.18 -2.38 -0.02 2.73 16 25 H 0.05 2.20 6.83 -2.39 -0.02 2.18 16 26 H 0.28 11.92 8.31 -92.71 -0.77 11.15 16 27 H 0.14 4.11 8.08 -2.39 -0.02 4.09 16 28 H 0.14 4.31 8.08 -2.39 -0.02 4.29 16 29 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -59.68 301.93 2.83 -56.86 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.15 Total: 16.79 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 4.81 Total: -28.41 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -0.60 Total: -90.60 kcal Atomic # 8 Polarization: -94.52 SS G_CDS: -4.25 Total: -98.77 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: 106.28 SS G_CDS: -0.30 Total: 105.98 kcal Total: -59.68 2.83 -56.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.447 kcal (2) G-P(sol) polarization free energy of solvation -59.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds