Wall clock time and date at job start Tue Mar 31 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 110.53244 * 2 1 4 4 C 1.33390 * 125.20683 * 89.29914 * 3 2 1 5 5 C 1.38422 * 114.91870 * 180.02562 * 4 3 2 6 6 C 1.33383 * 114.92604 * 0.02562 * 5 4 3 7 7 S 1.75889 * 109.59330 * 359.97438 * 6 5 4 8 8 N 1.47308 * 110.59799 * 122.82122 * 2 1 3 9 9 C 1.34536 * 106.61784 * 118.68331 * 8 2 1 10 10 O 1.21529 * 123.77584 * 180.02562 * 9 8 2 11 11 N 1.33801 * 112.45236 * 359.97438 * 9 8 2 12 12 C 1.46499 * 124.17138 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46939 * 89.97949 * 12 11 9 14 14 H 1.08002 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99903 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00125 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46852 * 90.00071 * 17 15 13 19 19 H 1.48498 * 109.46968 * 210.00358 * 17 15 13 20 20 H 1.48505 * 109.46992 * 329.99975 * 17 15 13 21 21 C 1.35119 * 111.68515 * 359.91107 * 11 9 8 22 22 O 1.21230 * 127.33161 * 180.09956 * 21 11 9 23 23 H 1.08998 * 109.47316 * 60.70030 * 1 2 3 24 24 H 1.08999 * 109.47213 * 180.70355 * 1 2 3 25 25 H 1.08998 * 109.47076 * 300.70338 * 1 2 3 26 26 H 1.07999 * 122.53431 * 0.04065 * 4 3 2 27 27 H 1.08006 * 122.53655 * 179.97438 * 5 4 3 28 28 H 1.07996 * 125.20664 * 180.02562 * 6 5 4 29 29 H 0.96996 * 126.69925 * 298.71982 * 8 2 1 30 30 H 1.09004 * 109.46710 * 209.97597 * 12 11 9 31 31 H 1.08999 * 109.47514 * 329.97654 * 12 11 9 32 32 H 0.97005 * 119.99921 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3158 2.1361 1.0898 5 6 2.7958 3.4107 0.8426 6 6 2.9279 3.7212 -0.4478 7 16 2.4296 2.3550 -1.4372 8 7 2.0483 -0.7474 1.1588 9 6 2.7628 -1.7750 0.6655 10 8 3.3321 -2.5960 1.3576 11 7 2.7758 -1.7928 -0.6723 12 6 3.4751 -2.7992 -1.4751 13 6 2.5480 -3.9549 -1.7504 14 1 1.5389 -3.9414 -1.3656 15 6 2.9879 -5.0297 -2.4937 16 7 2.1787 -6.0380 -2.7345 17 14 4.7329 -5.0528 -3.1600 18 1 5.6339 -5.6891 -2.1658 19 1 4.7687 -5.8264 -4.4271 20 1 5.1832 -3.6612 -3.4169 21 6 2.0625 -0.7698 -1.1922 22 8 1.8855 -0.5181 -2.3648 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 2.1615 1.7571 2.0893 27 1 3.0438 4.1018 1.6347 28 1 3.2867 4.6665 -0.8272 29 1 1.9024 -0.5396 2.0949 30 1 3.7922 -2.3550 -2.4187 31 1 4.3487 -3.1562 -0.9298 32 1 2.4883 -6.7943 -3.2571 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048392444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:44 Heat of formation + Delta-G solvation = 1.305827 kcal Electronic energy + Delta-G solvation = -19790.029544 eV Core-core repulsion = 16650.817119 eV Total energy + Delta-G solvation = -3139.212424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03785 -38.19537 -37.96678 -35.83176 -34.83886 -32.58412 -31.05707 -28.81702 -28.50862 -25.16406 -23.70406 -23.05966 -21.55711 -20.17886 -19.06430 -17.88291 -17.43568 -17.13189 -15.92765 -15.77363 -15.37696 -14.95548 -14.92635 -14.17614 -13.91964 -13.66005 -13.33488 -12.84891 -12.69284 -12.51678 -12.47416 -12.30773 -12.05547 -11.97558 -11.34665 -10.83968 -10.69160 -10.42155 -10.21078 -9.77930 -9.66727 -9.37640 -8.85452 -8.71937 -8.67092 -8.56772 -6.17441 -4.19349 0.78953 1.43050 1.88918 2.04781 2.55706 2.81314 3.26019 3.32029 3.33107 3.43825 3.61351 4.21744 4.32196 4.33053 4.80223 4.90704 5.13771 5.26610 5.35999 5.46815 5.55133 5.72789 5.89726 5.95559 6.09923 6.26490 6.32215 6.62882 6.68779 7.04083 7.39436 7.70085 7.85355 8.31022 8.64488 8.81640 9.38903 10.95349 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.005636 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.012459 B = 4967.227671 C = 5257.823602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.192 3.808 3 C -0.192 4.192 4 C -0.117 4.117 5 C -0.138 4.138 6 C -0.223 4.223 7 S 0.160 5.840 8 N -0.725 5.725 9 C 0.705 3.295 10 O -0.534 6.534 11 N -0.550 5.550 12 C 0.220 3.780 13 C -0.539 4.539 14 H 0.077 0.923 15 C 0.080 3.920 16 N -0.889 5.889 17 Si 0.874 3.126 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.529 3.471 22 O -0.457 6.457 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.433 0.567 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 19.863 6.750 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.098 3.902 3 C -0.311 4.311 4 C -0.148 4.148 5 C -0.169 4.169 6 C -0.359 4.359 7 S 0.425 5.575 8 N -0.390 5.390 9 C 0.406 3.594 10 O -0.407 6.407 11 N -0.294 5.294 12 C 0.101 3.899 13 C -0.577 4.577 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.527 5.527 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.188 1.188 21 C 0.313 3.687 22 O -0.326 6.326 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.182 0.818 29 H 0.277 0.723 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.842 18.995 4.703 19.587 hybrid contribution 0.843 0.214 1.638 1.855 sum 0.002 19.209 6.341 20.229 Atomic orbital electron populations 1.21996 0.89354 1.04375 1.04180 1.19599 0.96695 0.87236 0.86633 1.24221 1.10283 0.98731 0.97826 1.19938 1.01989 0.93964 0.98905 1.20084 1.03384 0.96916 0.96509 1.25890 1.08858 1.03672 0.97500 1.84953 1.61488 1.04074 1.06939 1.45588 1.56098 1.29252 1.08089 1.15881 0.79496 0.81603 0.82388 1.90970 1.48004 1.40774 1.60972 1.46511 1.47810 1.27823 1.07217 1.19982 0.93386 0.86251 0.90291 1.21100 1.00192 1.01397 1.34985 0.90463 1.24770 0.97653 0.94866 0.95142 1.69874 1.35829 1.07970 1.38980 0.86875 0.84943 0.79027 0.79145 1.19585 1.20587 1.18783 1.20448 0.77997 0.80997 0.89216 1.90750 1.56441 1.69268 1.16134 0.89827 0.90308 0.90389 0.84319 0.84270 0.81807 0.72336 0.93165 0.93354 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.96 37.16 0.33 -1.35 16 2 C 0.19 2.79 1.28 -133.25 -0.17 2.62 16 3 C -0.19 -2.45 5.32 -36.00 -0.19 -2.64 16 4 C -0.12 -1.22 9.66 -41.21 -0.40 -1.61 16 5 C -0.14 -1.29 10.18 -41.21 -0.42 -1.71 16 6 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 7 S 0.16 2.02 21.93 -107.50 -2.36 -0.34 16 8 N -0.72 -10.59 5.50 -54.02 -0.30 -10.89 16 9 C 0.71 14.33 8.63 -88.00 -0.76 13.57 16 10 O -0.53 -12.60 17.48 5.34 0.09 -12.50 16 11 N -0.55 -12.10 2.60 -121.93 -0.32 -12.41 16 12 C 0.22 5.51 4.52 -5.20 -0.02 5.48 16 13 C -0.54 -15.63 9.94 -34.44 -0.34 -15.97 16 14 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 15 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 21 C 0.53 10.36 6.64 -10.40 -0.07 10.29 16 22 O -0.46 -9.74 16.88 5.60 0.09 -9.65 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.14 1.15 7.71 -52.49 -0.40 0.75 16 27 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.43 4.75 8.66 -40.82 -0.35 4.39 16 30 H 0.05 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.05 1.21 7.29 -51.93 -0.38 0.83 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -34.12 296.04 -7.24 -41.36 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.21 Total: 0.72 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.81 Total: 9.05 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.16 Total: -49.76 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.19 Total: -22.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.36 Total: -0.34 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.12 -7.24 -41.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048392444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.667 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds