Wall clock time and date at job start Tue Mar 31 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 110.53244 * 2 1 4 4 C 1.33390 * 125.20683 * 89.29914 * 3 2 1 5 5 C 1.38422 * 114.91870 * 180.02562 * 4 3 2 6 6 C 1.33383 * 114.92604 * 0.02562 * 5 4 3 7 7 S 1.75889 * 109.59330 * 359.97438 * 6 5 4 8 8 N 1.47308 * 110.59799 * 122.82122 * 2 1 3 9 9 C 1.34536 * 106.61784 * 118.68331 * 8 2 1 10 10 O 1.21529 * 123.77584 * 180.02562 * 9 8 2 11 11 N 1.33801 * 112.45236 * 359.97438 * 9 8 2 12 12 C 1.46499 * 124.17138 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46939 * 89.97949 * 12 11 9 14 14 H 1.08002 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99903 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00125 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46852 * 90.00071 * 17 15 13 19 19 H 1.48498 * 109.46968 * 210.00358 * 17 15 13 20 20 H 1.48505 * 109.46992 * 329.99975 * 17 15 13 21 21 C 1.35119 * 111.68515 * 359.91107 * 11 9 8 22 22 O 1.21230 * 127.33161 * 180.09956 * 21 11 9 23 23 H 1.08998 * 109.47316 * 60.70030 * 1 2 3 24 24 H 1.08999 * 109.47213 * 180.70355 * 1 2 3 25 25 H 1.08998 * 109.47076 * 300.70338 * 1 2 3 26 26 H 1.07999 * 122.53431 * 0.04065 * 4 3 2 27 27 H 1.08006 * 122.53655 * 179.97438 * 5 4 3 28 28 H 1.07996 * 125.20664 * 180.02562 * 6 5 4 29 29 H 0.96996 * 126.69925 * 298.71982 * 8 2 1 30 30 H 1.09004 * 109.46710 * 209.97597 * 12 11 9 31 31 H 1.08999 * 109.47514 * 329.97654 * 12 11 9 32 32 H 0.97005 * 119.99921 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3158 2.1361 1.0898 5 6 2.7958 3.4107 0.8426 6 6 2.9279 3.7212 -0.4478 7 16 2.4296 2.3550 -1.4372 8 7 2.0483 -0.7474 1.1588 9 6 2.7628 -1.7750 0.6655 10 8 3.3321 -2.5960 1.3576 11 7 2.7758 -1.7928 -0.6723 12 6 3.4751 -2.7992 -1.4751 13 6 2.5480 -3.9549 -1.7504 14 1 1.5389 -3.9414 -1.3656 15 6 2.9879 -5.0297 -2.4937 16 7 2.1787 -6.0380 -2.7345 17 14 4.7329 -5.0528 -3.1600 18 1 5.6339 -5.6891 -2.1658 19 1 4.7687 -5.8264 -4.4271 20 1 5.1832 -3.6612 -3.4169 21 6 2.0625 -0.7698 -1.1922 22 8 1.8855 -0.5181 -2.3648 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8836 26 1 2.1615 1.7571 2.0893 27 1 3.0438 4.1018 1.6347 28 1 3.2867 4.6665 -0.8272 29 1 1.9024 -0.5396 2.0949 30 1 3.7922 -2.3550 -2.4187 31 1 4.3487 -3.1562 -0.9298 32 1 2.4883 -6.7943 -3.2571 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048392444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:43 Heat of formation + Delta-G solvation = -23.666775 kcal Electronic energy + Delta-G solvation = -19791.112437 eV Core-core repulsion = 16650.817119 eV Total energy + Delta-G solvation = -3140.295318 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54089 -39.72937 -39.00902 -37.24228 -36.53379 -34.68191 -32.31496 -30.55748 -29.62457 -26.40927 -25.15481 -24.65878 -22.88204 -21.66438 -20.08657 -19.39448 -19.07635 -18.67919 -17.51243 -17.06833 -16.86011 -16.62151 -16.17880 -15.80725 -15.34963 -15.12651 -14.62364 -14.44378 -14.02142 -13.69982 -13.64340 -13.48058 -13.37898 -13.12101 -13.01580 -12.61773 -12.35186 -11.93260 -11.82635 -11.61117 -11.26074 -10.90276 -10.81371 -10.50595 -9.72485 -9.46587 -8.42453 -6.51758 -0.05427 0.45913 0.57699 1.07558 1.28195 1.33685 1.37414 1.44549 1.77053 1.99041 2.16103 2.25498 2.84331 2.91813 3.23572 3.70001 4.11748 4.24192 4.46235 4.50466 4.57102 4.59989 4.65517 4.68753 4.84474 5.00542 5.13625 5.22773 5.31016 5.53390 5.77057 6.01480 6.13027 6.34620 6.47089 7.05919 7.15560 8.74115 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.005636 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.012459 B = 4967.227671 C = 5257.823602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.209 3.791 3 C -0.218 4.218 4 C -0.095 4.095 5 C -0.140 4.140 6 C -0.202 4.202 7 S 0.095 5.905 8 N -0.693 5.693 9 C 0.701 3.299 10 O -0.575 6.575 11 N -0.569 5.569 12 C 0.228 3.772 13 C -0.552 4.552 14 H 0.031 0.969 15 C 0.021 3.979 16 N -0.935 5.935 17 Si 0.945 3.055 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.245 1.245 21 C 0.517 3.483 22 O -0.482 6.482 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.166 0.834 27 H 0.174 0.826 28 H 0.192 0.808 29 H 0.453 0.547 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 22.698 8.181 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.116 3.884 3 C -0.336 4.336 4 C -0.127 4.127 5 C -0.170 4.170 6 C -0.338 4.338 7 S 0.359 5.641 8 N -0.360 5.360 9 C 0.402 3.598 10 O -0.451 6.451 11 N -0.312 5.312 12 C 0.107 3.893 13 C -0.590 4.590 14 H 0.050 0.950 15 C -0.179 4.179 16 N -0.573 5.573 17 Si 0.766 3.234 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.168 1.168 21 C 0.304 3.696 22 O -0.353 6.353 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.183 0.817 27 H 0.191 0.809 28 H 0.209 0.791 29 H 0.301 0.699 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.155 21.899 6.175 22.753 hybrid contribution 0.426 -0.571 1.235 1.426 sum 0.582 21.328 7.410 22.586 Atomic orbital electron populations 1.22071 0.87249 1.04008 1.06341 1.19519 0.97912 0.87538 0.83422 1.23931 1.13557 0.97706 0.98443 1.20341 0.99195 0.93944 0.99224 1.20463 1.02529 0.96868 0.97141 1.26203 1.07418 1.03157 0.96982 1.85228 1.63226 1.06678 1.08974 1.45370 1.54051 1.27307 1.09257 1.16003 0.79776 0.82316 0.81682 1.90934 1.50006 1.42616 1.61532 1.46551 1.48534 1.28066 1.08090 1.19618 0.92784 0.85846 0.91011 1.21266 0.99069 1.03451 1.35200 0.95028 1.25784 1.02804 0.94098 0.95172 1.70014 1.38408 1.08912 1.39990 0.85757 0.78623 0.80206 0.78795 1.18433 1.19468 1.16811 1.21356 0.77167 0.80655 0.90449 1.90717 1.57040 1.69827 1.17712 0.89583 0.91954 0.86283 0.81692 0.80878 0.79119 0.69854 0.92874 0.93202 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.96 71.98 0.64 -2.47 16 2 C 0.21 5.82 1.28 2.24 0.00 5.83 16 3 C -0.22 -5.07 5.32 24.59 0.13 -4.94 16 4 C -0.10 -1.58 9.66 21.22 0.20 -1.38 16 5 C -0.14 -1.95 10.18 21.21 0.22 -1.74 16 6 C -0.20 -3.19 11.23 66.72 0.75 -2.44 16 7 S 0.09 2.27 21.93 -56.49 -1.24 1.03 16 8 N -0.69 -19.18 5.50 -443.26 -2.44 -21.62 16 9 C 0.70 28.62 8.63 179.43 1.55 30.16 16 10 O -0.57 -27.45 17.48 -3.81 -0.07 -27.52 16 11 N -0.57 -25.58 2.60 -776.72 -2.02 -27.59 16 12 C 0.23 11.70 4.52 85.63 0.39 12.09 16 13 C -0.55 -33.41 9.94 25.60 0.25 -33.15 16 14 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 15 C 0.02 1.26 5.47 84.66 0.46 1.73 16 16 N -0.93 -59.09 13.96 21.45 0.30 -58.79 16 17 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.24 -10.64 6.54 99.48 0.65 -9.98 16 21 C 0.52 20.58 6.64 87.88 0.58 21.16 16 22 O -0.48 -21.24 16.88 -2.88 -0.05 -21.29 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.17 1.84 7.71 -2.91 -0.02 1.82 16 27 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 28 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.45 8.63 8.66 -92.71 -0.80 7.82 16 30 H 0.05 2.67 7.07 -2.38 -0.02 2.65 16 31 H 0.05 2.52 7.29 -2.39 -0.02 2.51 16 32 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 Total: -1.00 -78.61 296.04 1.86 -76.74 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.31 Total: 8.06 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 5.19 Total: 24.84 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.16 Total: -108.00 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.12 Total: -48.81 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.24 Total: 1.03 kcal Total: -78.61 1.86 -76.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048392444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.075 kcal (2) G-P(sol) polarization free energy of solvation -78.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds