Wall clock time and date at job start Tue Mar 31 2020 01:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47020 * 2 1 4 4 C 1.50703 * 109.47220 * 119.99957 * 2 1 3 5 5 H 1.07995 * 119.99858 * 119.99862 * 4 2 1 6 6 C 1.37875 * 119.99815 * 300.00089 * 4 2 1 7 7 N 1.31514 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99972 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47059 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47111 * 120.00036 * 8 6 4 11 11 H 1.48497 * 109.47179 * 240.00091 * 8 6 4 12 12 N 1.46502 * 109.47207 * 240.00128 * 2 1 3 13 13 S 1.65603 * 120.00217 * 94.99995 * 12 2 1 14 14 O 1.42096 * 106.39933 * 311.46307 * 13 12 2 15 15 O 1.42096 * 106.40064 * 178.53991 * 13 12 2 16 16 C 1.76199 * 107.21666 * 64.99961 * 13 12 2 17 17 C 1.38365 * 119.84663 * 90.00170 * 16 13 12 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 13 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 7.77711 * 145.96360 * 348.26660 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37951 * 119.84578 * 359.46927 * 22 19 18 24 24 H 1.09004 * 109.47382 * 300.00294 * 1 2 3 25 25 H 1.09008 * 109.47169 * 59.99820 * 1 2 3 26 26 H 1.08996 * 109.47526 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00395 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00000 * 274.99715 * 12 2 1 29 29 H 1.07993 * 119.92724 * 359.97438 * 17 16 13 30 30 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 32 32 H 1.08002 * 119.92809 * 180.23515 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0183 -0.6906 -1.1962 13 16 2.4121 0.1772 -2.5505 14 8 1.3247 1.0593 -2.7921 15 8 2.8776 -0.7635 -3.5085 16 6 3.7927 1.1910 -2.1372 17 6 5.0779 0.7120 -2.3195 18 6 6.1633 1.5006 -1.9985 19 6 5.9626 2.7850 -1.4889 20 6 7.0847 3.6094 -1.1540 21 7 7.9747 4.2620 -0.8852 22 6 4.6629 3.2600 -1.3025 23 6 3.5866 2.4628 -1.6327 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7094 1.1619 3.4843 28 1 2.1110 -1.6562 -1.1949 29 1 5.2317 -0.2814 -2.7141 30 1 7.1660 1.1254 -2.1410 31 1 4.5006 4.2507 -0.9042 32 1 2.5808 2.8303 -1.4925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:35 Heat of formation + Delta-G solvation = -42.028397 kcal Electronic energy + Delta-G solvation = -19323.283515 eV Core-core repulsion = 16182.191977 eV Total energy + Delta-G solvation = -3141.091537 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46442 -38.26618 -37.66490 -37.17859 -36.84138 -34.06216 -32.74898 -32.23556 -30.06036 -27.16789 -25.57306 -23.97980 -22.75788 -20.58301 -20.11511 -19.19688 -18.53376 -17.81123 -17.19080 -16.75445 -16.02945 -15.78895 -15.31681 -15.23872 -15.11869 -14.65090 -14.43810 -14.04447 -14.00846 -13.70837 -13.62183 -13.41548 -13.19186 -13.05429 -12.93918 -12.81476 -12.31049 -12.29228 -12.17368 -11.99165 -11.90452 -11.02409 -10.56680 -10.44054 -10.13530 -10.03906 -8.09261 -6.22020 -0.81513 -0.40541 0.23362 1.43525 1.46274 1.50974 1.57485 1.59572 2.20930 2.48809 2.56055 2.66078 2.88879 3.21631 3.38110 3.80403 3.81939 4.19665 4.34932 4.50249 4.58243 4.83401 4.88986 4.96935 5.00752 5.10673 5.18184 5.24246 5.62564 5.66312 5.81745 6.10111 6.15182 6.23778 6.48236 6.89588 7.47693 8.95841 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.007058 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.486403 B = 3966.276384 C = 5296.327932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.276 3.724 3 H 0.034 0.966 4 C -0.533 4.533 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.285 1.285 12 N -1.098 6.098 13 S 2.703 3.297 14 O -0.986 6.986 15 O -0.984 6.984 16 C -0.652 4.652 17 C -0.025 4.025 18 C -0.083 4.083 19 C 0.017 3.983 20 C 0.278 3.722 21 N -0.441 5.441 22 C -0.088 4.088 23 C -0.031 4.031 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.036 0.964 27 H 0.264 0.736 28 H 0.419 0.581 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 0.397 -7.788 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.171 3.829 3 H 0.052 0.948 4 C -0.573 4.573 5 H 0.088 0.912 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.859 5.859 13 S 2.794 3.206 14 O -0.976 6.976 15 O -0.975 6.975 16 C -0.741 4.741 17 C -0.044 4.044 18 C -0.104 4.104 19 C 0.014 3.986 20 C -0.038 4.038 21 N -0.117 5.117 22 C -0.109 4.109 23 C -0.050 4.050 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.254 0.746 29 H 0.185 0.815 30 H 0.191 0.809 31 H 0.179 0.821 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.827 1.687 -8.047 11.352 hybrid contribution 0.167 -0.555 1.429 1.542 sum 7.995 1.132 -6.618 10.440 Atomic orbital electron populations 1.22165 0.98591 0.99976 1.00717 1.18313 0.91085 0.91933 0.81586 0.94811 1.21637 1.31598 1.13302 0.90733 0.91228 1.25570 0.95153 0.95641 1.01542 1.69982 1.37110 1.23741 1.24292 0.85590 0.78021 0.78777 0.79712 1.18919 1.21164 1.21071 1.55374 1.81047 1.19109 1.30364 1.01310 0.73777 0.73059 0.72424 1.93542 1.52112 1.67484 1.84486 1.93521 1.82577 1.62024 1.59341 1.31151 1.17281 1.10635 1.15007 1.21138 0.89672 1.00630 0.92955 1.21578 1.01231 0.91293 0.96266 1.16306 0.88087 0.93073 1.01168 1.25622 0.92532 0.92702 0.92898 1.81276 1.11281 1.09903 1.09211 1.21488 0.90026 1.01427 0.97920 1.21051 1.00884 0.91509 0.91542 0.91128 0.94962 0.94514 0.92688 0.74620 0.81455 0.80893 0.82066 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.98 9.29 71.98 0.67 -6.31 16 2 C 0.28 12.08 2.76 44.24 0.12 12.20 16 3 H 0.03 1.54 7.22 -2.39 -0.02 1.53 16 4 C -0.53 -25.39 8.76 25.60 0.22 -25.16 16 5 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -47.43 11.32 21.45 0.24 -47.19 16 8 Si 0.95 39.70 29.54 68.60 2.03 41.73 16 9 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 N -1.10 -38.96 5.46 -172.52 -0.94 -39.90 16 13 S 2.70 88.06 5.65 -56.49 -0.32 87.74 16 14 O -0.99 -37.57 16.53 -128.00 -2.12 -39.69 16 15 O -0.98 -33.02 17.27 -128.00 -2.21 -35.23 16 16 C -0.65 -18.21 5.82 22.33 0.13 -18.08 16 17 C -0.02 -0.56 9.50 22.23 0.21 -0.35 16 18 C -0.08 -1.55 9.76 22.54 0.22 -1.33 16 19 C 0.02 0.36 5.73 -21.36 -0.12 0.24 16 20 C 0.28 6.30 15.33 88.33 1.35 7.66 16 21 N -0.44 -11.82 18.54 19.00 0.35 -11.47 16 22 C -0.09 -1.97 9.76 22.54 0.22 -1.75 16 23 C -0.03 -0.83 8.88 22.23 0.20 -0.63 16 24 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 25 H 0.03 1.37 7.64 -2.38 -0.02 1.35 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 28 H 0.42 13.27 8.83 -96.74 -0.85 12.41 16 29 H 0.17 3.08 7.60 -2.91 -0.02 3.06 16 30 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.15 4.07 7.60 -2.91 -0.02 4.05 16 Total: -1.00 -61.49 301.85 1.02 -60.46 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.31 Total: 15.55 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.67 Total: -32.01 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -0.35 Total: -98.56 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -4.33 Total: -74.91 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 88.06 SS G_CDS: -0.32 Total: 87.74 kcal Total: -61.49 1.02 -60.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.436 kcal (2) G-P(sol) polarization free energy of solvation -61.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds