Wall clock time and date at job start Tue Mar 31 2020 01:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46930 * 2 1 4 4 C 1.50698 * 109.47403 * 239.99595 * 2 1 3 5 5 H 1.08001 * 119.99786 * 239.99996 * 4 2 1 6 6 C 1.37875 * 119.99909 * 60.00398 * 4 2 1 7 7 N 1.31518 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46868 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47215 * 119.99770 * 8 6 4 11 11 H 1.48502 * 109.46681 * 239.99769 * 8 6 4 12 12 N 1.46502 * 109.46913 * 119.99412 * 2 1 3 13 13 S 1.65603 * 120.00217 * 265.00340 * 12 2 1 14 14 O 1.42096 * 106.39933 * 311.46307 * 13 12 2 15 15 O 1.42096 * 106.40064 * 178.53991 * 13 12 2 16 16 C 1.76199 * 107.21666 * 64.99961 * 13 12 2 17 17 C 1.38365 * 119.84663 * 90.00170 * 16 13 12 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 13 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 7.77711 * 49.02035 * 57.56306 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37952 * 119.84588 * 359.42138 * 22 19 18 24 24 H 1.09009 * 109.46851 * 60.00617 * 1 2 3 25 25 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47299 * 300.00498 * 1 2 3 27 27 H 0.97003 * 119.99444 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00000 * 85.00061 * 12 2 1 29 29 H 1.07993 * 119.92724 * 359.97438 * 17 16 13 30 30 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 32 32 H 1.08002 * 119.92853 * 180.27179 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1466 -2.2872 -3.6035 10 1 1.1663 -1.5869 -4.8160 11 1 3.1469 -0.1875 -4.8163 12 7 2.0183 -0.6905 1.1963 13 16 2.4120 0.1774 2.5506 14 8 3.2434 1.2445 2.1156 15 8 2.8122 -0.7695 3.5316 16 6 0.9273 0.9149 3.1473 17 6 0.1399 0.2361 4.0605 18 6 -1.0235 0.8079 4.5322 19 6 -1.4056 2.0748 4.0865 20 6 -2.6117 2.6747 4.5724 21 7 -3.5702 3.1492 4.9553 22 6 -0.6090 2.7519 3.1610 23 6 0.5552 2.1710 2.7022 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7084 1.1607 -3.4845 28 1 2.1109 -1.6561 1.1951 29 1 0.4368 -0.7435 4.4047 30 1 -1.6374 0.2769 5.2447 31 1 -0.9012 3.7300 2.8084 32 1 1.1745 2.6955 1.9896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:38 Heat of formation + Delta-G solvation = -21.373336 kcal Electronic energy + Delta-G solvation = -19317.449398 eV Core-core repulsion = 16177.253532 eV Total energy + Delta-G solvation = -3140.195867 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.54384 -36.84754 -36.66613 -35.53651 -35.42581 -32.26523 -31.76677 -31.32499 -28.39406 -25.32989 -24.53859 -23.03485 -21.04141 -19.27299 -19.14708 -17.74861 -17.29939 -16.11146 -15.91147 -15.16661 -14.88703 -14.57795 -14.28600 -14.16323 -13.77371 -13.61823 -13.04513 -12.78831 -12.71494 -12.61995 -12.27055 -11.82817 -11.69956 -11.63421 -11.36231 -11.24195 -11.04868 -10.78451 -10.61779 -10.40878 -10.16425 -9.47622 -9.29705 -9.20132 -8.71146 -8.37885 -6.19291 -4.26216 0.18269 0.88140 1.13187 2.38643 2.55719 3.22186 3.30853 3.33898 3.46833 3.54546 3.69762 4.16365 4.31621 4.45503 4.63687 4.88324 5.11982 5.14450 5.34646 5.37675 5.74038 5.77047 5.95179 6.02142 6.23322 6.54201 6.67868 6.72845 6.91432 7.17838 7.48375 7.58975 7.76720 7.92956 8.18497 8.76619 9.40289 10.86936 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.005501 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.306944 B = 5088.563101 C = 5983.440794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.521 4.521 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -1.096 6.096 13 S 2.686 3.314 14 O -0.955 6.955 15 O -0.977 6.977 16 C -0.642 4.642 17 C -0.021 4.021 18 C -0.096 4.096 19 C 0.016 3.984 20 C 0.255 3.745 21 N -0.411 5.411 22 C -0.091 4.091 23 C -0.012 4.012 24 H 0.094 0.906 25 H 0.035 0.965 26 H 0.014 0.986 27 H 0.264 0.736 28 H 0.411 0.589 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 0.141 10.332 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.561 4.561 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.857 5.857 13 S 2.773 3.227 14 O -0.945 6.945 15 O -0.967 6.967 16 C -0.727 4.727 17 C -0.040 4.040 18 C -0.117 4.117 19 C 0.012 3.988 20 C -0.061 4.061 21 N -0.086 5.086 22 C -0.112 4.112 23 C -0.031 4.031 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.298 1.313 11.169 11.720 hybrid contribution -0.267 -0.815 -1.070 1.372 sum -3.566 0.497 10.099 10.721 Atomic orbital electron populations 1.22328 0.98502 1.00184 1.01028 1.18673 0.90794 0.93181 0.81127 0.92977 1.21243 1.31905 1.13206 0.89714 0.91594 1.24903 0.94823 0.95002 0.99105 1.69859 1.36227 1.22652 1.23913 0.86389 0.78611 0.79640 0.82461 1.19651 1.20967 1.20842 1.55530 1.83717 1.19244 1.27259 1.02099 0.73901 0.73782 0.72947 1.93590 1.62887 1.56647 1.81397 1.93536 1.81133 1.61739 1.60303 1.31614 1.24685 1.06568 1.09823 1.20848 0.91846 0.99155 0.92183 1.21232 0.97069 0.93454 0.99980 1.16240 0.89433 0.94759 0.98337 1.25715 0.93021 0.93624 0.93737 1.81248 1.10678 1.08254 1.08420 1.21306 0.93999 1.00385 0.95517 1.20996 0.94654 0.92350 0.95067 0.88712 0.94611 0.96729 0.92589 0.75457 0.83303 0.84309 0.84062 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.29 37.16 0.35 -2.97 16 2 C 0.27 5.84 2.89 -69.08 -0.20 5.64 16 3 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 4 C -0.52 -12.91 8.76 -34.44 -0.30 -13.22 16 5 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.13 11.32 55.43 0.63 -22.50 16 8 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -1.10 -19.77 5.46 -5.88 -0.03 -19.80 16 13 S 2.69 44.65 5.72 -107.50 -0.61 44.03 16 14 O -0.96 -18.81 16.60 -57.17 -0.95 -19.76 16 15 O -0.98 -16.98 17.27 -57.17 -0.99 -17.97 16 16 C -0.64 -8.91 5.07 -39.49 -0.20 -9.11 16 17 C -0.02 -0.25 9.50 -39.64 -0.38 -0.62 16 18 C -0.10 -0.98 9.76 -39.17 -0.38 -1.36 16 19 C 0.02 0.17 5.73 -106.93 -0.61 -0.44 16 20 C 0.25 3.00 15.33 -22.47 -0.34 2.65 16 21 N -0.41 -5.61 18.54 41.83 0.78 -4.83 16 22 C -0.09 -1.02 9.76 -39.17 -0.38 -1.40 16 23 C -0.01 -0.15 8.57 -39.64 -0.34 -0.49 16 24 H 0.09 2.20 6.07 -51.92 -0.32 1.89 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.01 0.25 6.17 -51.93 -0.32 -0.07 16 27 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.41 6.69 8.83 -34.47 -0.30 6.39 16 29 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 30 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.15 2.03 7.60 -52.49 -0.40 1.63 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -30.03 299.88 -7.51 -37.54 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.94 Total: 3.70 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.89 Total: -19.79 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.37 Total: -47.13 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.94 Total: -37.73 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 44.65 SS G_CDS: -0.61 Total: 44.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.03 -7.51 -37.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.166 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds