Wall clock time and date at job start Tue Mar 31 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46930 * 2 1 4 4 C 1.50698 * 109.47403 * 239.99595 * 2 1 3 5 5 H 1.08001 * 119.99786 * 239.99996 * 4 2 1 6 6 C 1.37875 * 119.99909 * 60.00398 * 4 2 1 7 7 N 1.31518 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46868 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47215 * 119.99770 * 8 6 4 11 11 H 1.48502 * 109.46681 * 239.99769 * 8 6 4 12 12 N 1.46502 * 109.46913 * 119.99412 * 2 1 3 13 13 S 1.65603 * 120.00217 * 265.00340 * 12 2 1 14 14 O 1.42096 * 106.39933 * 311.46307 * 13 12 2 15 15 O 1.42096 * 106.40064 * 178.53991 * 13 12 2 16 16 C 1.76199 * 107.21666 * 64.99961 * 13 12 2 17 17 C 1.38365 * 119.84663 * 90.00170 * 16 13 12 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 13 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 7.77711 * 49.02035 * 57.56306 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37952 * 119.84588 * 359.42138 * 22 19 18 24 24 H 1.09009 * 109.46851 * 60.00617 * 1 2 3 25 25 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47299 * 300.00498 * 1 2 3 27 27 H 0.97003 * 119.99444 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00000 * 85.00061 * 12 2 1 29 29 H 1.07993 * 119.92724 * 359.97438 * 17 16 13 30 30 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 32 32 H 1.08002 * 119.92853 * 180.27179 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1466 -2.2872 -3.6035 10 1 1.1663 -1.5869 -4.8160 11 1 3.1469 -0.1875 -4.8163 12 7 2.0183 -0.6905 1.1963 13 16 2.4120 0.1774 2.5506 14 8 3.2434 1.2445 2.1156 15 8 2.8122 -0.7695 3.5316 16 6 0.9273 0.9149 3.1473 17 6 0.1399 0.2361 4.0605 18 6 -1.0235 0.8079 4.5322 19 6 -1.4056 2.0748 4.0865 20 6 -2.6117 2.6747 4.5724 21 7 -3.5702 3.1492 4.9553 22 6 -0.6090 2.7519 3.1610 23 6 0.5552 2.1710 2.7022 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7084 1.1607 -3.4845 28 1 2.1109 -1.6561 1.1951 29 1 0.4368 -0.7435 4.4047 30 1 -1.6374 0.2769 5.2447 31 1 -0.9012 3.7300 2.8084 32 1 1.1745 2.6955 1.9896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:37 Heat of formation + Delta-G solvation = -41.786939 kcal Electronic energy + Delta-G solvation = -19318.334599 eV Core-core repulsion = 16177.253532 eV Total energy + Delta-G solvation = -3141.081067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48519 -38.26860 -37.66579 -37.18536 -36.85500 -34.07215 -32.75561 -32.23697 -30.04870 -27.18491 -25.55754 -23.95158 -22.75297 -20.57482 -20.10311 -19.18745 -18.70485 -17.68971 -17.18959 -16.74783 -16.00793 -15.77695 -15.39581 -15.24793 -15.06602 -14.64160 -14.44723 -14.05043 -13.96053 -13.79382 -13.65106 -13.42257 -13.14158 -13.05587 -12.92793 -12.78877 -12.37690 -12.28702 -12.16578 -11.96811 -11.86495 -11.05818 -10.55489 -10.45443 -10.12897 -10.01567 -8.10294 -6.22573 -0.81686 -0.42500 0.23431 1.45302 1.46880 1.50738 1.58138 1.60401 2.22779 2.48839 2.57720 2.66069 2.88566 3.20512 3.38130 3.81148 3.82621 4.19719 4.34844 4.50919 4.60359 4.83656 4.90125 4.97697 5.01148 5.09434 5.12209 5.22634 5.62399 5.65545 5.84412 6.12163 6.18288 6.25568 6.48045 6.88062 7.46686 8.94808 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.005501 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.306944 B = 5088.563101 C = 5983.440794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.271 3.729 3 H 0.028 0.972 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.285 1.285 12 N -1.098 6.098 13 S 2.701 3.299 14 O -0.993 6.993 15 O -0.984 6.984 16 C -0.649 4.649 17 C -0.022 4.022 18 C -0.081 4.081 19 C 0.020 3.980 20 C 0.278 3.722 21 N -0.442 5.442 22 C -0.085 4.085 23 C -0.029 4.029 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.418 0.582 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -0.548 11.418 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.579 4.579 5 H 0.083 0.917 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.211 1.211 12 N -0.859 5.859 13 S 2.792 3.208 14 O -0.983 6.983 15 O -0.975 6.975 16 C -0.739 4.739 17 C -0.042 4.042 18 C -0.102 4.102 19 C 0.016 3.984 20 C -0.038 4.038 21 N -0.117 5.117 22 C -0.106 4.106 23 C -0.049 4.049 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.254 0.746 29 H 0.186 0.814 30 H 0.191 0.809 31 H 0.180 0.820 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.253 0.586 12.244 12.975 hybrid contribution 0.014 -0.571 -1.301 1.421 sum -4.240 0.015 10.943 11.735 Atomic orbital electron populations 1.22139 0.97356 1.00337 1.01067 1.18366 0.91571 0.91910 0.81595 0.95390 1.21642 1.31803 1.13323 0.91142 0.91730 1.25588 0.95163 0.95696 1.01589 1.69968 1.37090 1.23649 1.24338 0.85535 0.78096 0.78659 0.79481 1.19194 1.20591 1.21091 1.55326 1.83895 1.19655 1.27037 1.01300 0.74288 0.72940 0.72236 1.93540 1.65222 1.57605 1.81974 1.93520 1.81906 1.62122 1.59913 1.31072 1.23924 1.07229 1.11634 1.21126 0.91856 0.99815 0.91363 1.21570 0.96362 0.92841 0.99378 1.16294 0.88922 0.95081 0.98072 1.25627 0.92556 0.92768 0.92824 1.81290 1.11688 1.09225 1.09516 1.21471 0.92993 1.01149 0.95033 1.21015 0.95630 0.92464 0.95769 0.91357 0.94265 0.93943 0.92633 0.74632 0.81429 0.80882 0.82022 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 9.29 71.98 0.67 -5.43 16 2 C 0.27 11.96 2.89 44.24 0.13 12.09 16 3 H 0.03 1.38 7.50 -2.38 -0.02 1.36 16 4 C -0.54 -26.92 8.76 25.60 0.22 -26.69 16 5 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -48.01 11.32 21.45 0.24 -47.77 16 8 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 N -1.10 -39.41 5.46 -172.52 -0.94 -40.35 16 13 S 2.70 88.94 5.72 -56.49 -0.32 88.62 16 14 O -0.99 -39.96 16.60 -128.00 -2.12 -42.08 16 15 O -0.98 -33.21 17.27 -128.00 -2.21 -35.42 16 16 C -0.65 -17.04 5.07 22.33 0.11 -16.93 16 17 C -0.02 -0.45 9.50 22.23 0.21 -0.24 16 18 C -0.08 -1.32 9.76 22.54 0.22 -1.10 16 19 C 0.02 0.37 5.73 -21.36 -0.12 0.25 16 20 C 0.28 5.73 15.33 88.33 1.35 7.08 16 21 N -0.44 -11.08 18.54 19.00 0.35 -10.72 16 22 C -0.09 -1.72 9.76 22.54 0.22 -1.50 16 23 C -0.03 -0.74 8.57 22.23 0.19 -0.55 16 24 H 0.07 3.18 6.07 -2.38 -0.01 3.17 16 25 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.04 1.44 6.17 -2.39 -0.01 1.42 16 27 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 28 H 0.42 13.44 8.83 -96.74 -0.85 12.59 16 29 H 0.17 2.74 7.60 -2.91 -0.02 2.72 16 30 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.15 3.88 7.60 -2.91 -0.02 3.86 16 Total: -1.00 -63.90 299.88 0.99 -62.91 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.32 Total: 13.58 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.66 Total: -31.55 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -0.35 Total: -98.84 kcal Atomic # 8 Polarization: -73.17 SS G_CDS: -4.34 Total: -77.51 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 88.94 SS G_CDS: -0.32 Total: 88.62 kcal Total: -63.90 0.99 -62.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds