Wall clock time and date at job start Tue Mar 31 2020 01:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47097 * 2 1 4 4 C 1.50695 * 109.47120 * 120.00256 * 2 1 3 5 5 H 1.08002 * 119.99818 * 120.00073 * 4 2 1 6 6 C 1.37873 * 120.00557 * 299.99675 * 4 2 1 7 7 N 1.31522 * 119.99451 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00568 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47007 * 90.00213 * 8 6 4 10 10 H 1.48504 * 109.47374 * 210.00096 * 8 6 4 11 11 H 1.48502 * 109.47213 * 330.00413 * 8 6 4 12 12 N 1.46505 * 109.47038 * 240.00189 * 2 1 3 13 13 S 1.65598 * 119.99746 * 95.96026 * 12 2 1 14 14 O 1.42099 * 106.40612 * 310.67142 * 13 12 2 15 15 O 1.42094 * 106.40326 * 177.74916 * 13 12 2 16 16 C 1.76200 * 107.21961 * 64.20989 * 13 12 2 17 17 C 1.37965 * 120.08235 * 244.29070 * 16 13 12 18 18 C 1.38340 * 120.15868 * 179.97438 * 17 16 13 19 19 C 1.38387 * 120.29795 * 359.97438 * 18 17 16 20 20 C 1.37920 * 120.15732 * 359.97438 * 19 18 17 21 21 C 1.39614 * 120.07498 * 64.26588 * 16 13 12 22 22 C 1.43202 * 120.15087 * 0.02562 * 21 16 13 23 23 N 4.55418 * 145.02561 * 221.42714 * 2 1 3 24 24 H 1.09001 * 109.46923 * 299.99784 * 1 2 3 25 25 H 1.08995 * 109.47518 * 59.99551 * 1 2 3 26 26 H 1.09002 * 109.47450 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99932 * 179.97438 * 7 6 4 28 28 H 0.96995 * 119.99674 * 275.96371 * 12 2 1 29 29 H 1.08006 * 119.91735 * 0.25842 * 17 16 13 30 30 H 1.07990 * 119.84979 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.92173 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.08150 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5462 4.4122 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 7 2.0183 -0.6906 -1.1962 13 16 2.4347 0.1793 -2.5424 14 8 1.3531 1.0647 -2.7985 15 8 2.9123 -0.7603 -3.4954 16 6 3.8113 1.1888 -2.1060 17 6 3.6915 2.5632 -2.1153 18 6 4.7712 3.3573 -1.7724 19 6 5.9777 2.7799 -1.4174 20 6 6.1112 1.4072 -1.4028 21 6 5.0258 0.5997 -1.7494 22 6 5.1575 -0.8263 -1.7376 23 7 5.2617 -1.9574 -1.7273 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7082 1.1607 3.4845 28 1 2.0977 -1.6573 -1.1997 29 1 2.7512 3.0201 -2.3865 30 1 4.6720 4.4326 -1.7817 31 1 6.8167 3.4056 -1.1512 32 1 7.0532 0.9579 -1.1252 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:40 Heat of formation + Delta-G solvation = -17.059178 kcal Electronic energy + Delta-G solvation = -19876.089975 eV Core-core repulsion = 16736.081185 eV Total energy + Delta-G solvation = -3140.008791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41523 -36.96038 -36.19424 -35.47041 -35.41521 -32.25303 -31.55097 -31.35562 -28.32802 -25.24691 -24.16990 -23.22795 -21.00288 -19.61409 -18.72914 -17.55051 -16.97904 -16.33098 -15.73860 -15.17642 -15.10915 -14.51185 -14.35286 -14.04074 -13.61133 -13.15989 -12.78412 -12.67808 -12.41123 -12.35613 -12.21198 -11.75889 -11.70932 -11.62474 -11.49247 -11.19993 -11.01977 -10.63349 -10.60460 -10.31345 -10.15307 -9.46608 -9.26295 -9.04434 -8.66574 -8.37257 -6.17319 -4.25325 0.44181 0.87387 1.03062 2.70722 2.94359 3.21403 3.28868 3.32313 3.49230 3.73094 3.79625 4.14889 4.31755 4.54998 4.78632 4.93506 5.14427 5.14642 5.32838 5.45952 5.70561 5.94900 6.00199 6.17775 6.25266 6.62729 6.78631 7.01397 7.05066 7.51877 7.54222 7.65303 7.74380 7.99438 8.22359 8.77926 9.41367 10.88193 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.007656 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.933457 B = 3656.605229 C = 4026.046733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.275 3.725 3 H 0.043 0.957 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -1.097 6.097 13 S 2.678 3.322 14 O -0.955 6.955 15 O -0.972 6.972 16 C -0.627 4.627 17 C -0.019 4.019 18 C -0.114 4.114 19 C -0.072 4.072 20 C -0.094 4.094 21 C 0.082 3.918 22 C 0.225 3.775 23 N -0.369 5.369 24 H 0.093 0.907 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.411 0.589 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 6.463 -6.657 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.171 3.829 3 H 0.060 0.940 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.859 5.859 13 S 2.765 3.235 14 O -0.945 6.945 15 O -0.961 6.961 16 C -0.714 4.714 17 C -0.038 4.038 18 C -0.134 4.134 19 C -0.090 4.090 20 C -0.115 4.115 21 C 0.077 3.923 22 C -0.091 4.091 23 N -0.043 5.043 24 H 0.111 0.889 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.710 5.014 -7.305 11.745 hybrid contribution 0.900 -0.069 1.523 1.771 sum 8.609 4.945 -5.781 11.489 Atomic orbital electron populations 1.22228 0.97865 1.00069 1.01547 1.18565 0.91631 0.92038 0.80635 0.93977 1.21274 1.32017 1.13232 0.89977 0.91886 1.24884 0.94792 0.94995 0.98973 1.69876 1.35933 1.22595 1.23936 0.86508 0.78575 0.80132 0.82304 1.20607 1.21015 1.19816 1.55591 1.80214 1.18369 1.31702 1.02342 0.73998 0.73740 0.73434 1.93573 1.50146 1.66845 1.83939 1.93579 1.81940 1.61202 1.59420 1.31368 1.16163 1.09348 1.14475 1.21005 0.99787 0.90859 0.92162 1.21502 0.92871 1.00726 0.98276 1.21339 0.97943 0.94299 0.95467 1.21255 0.97798 0.93773 0.98646 1.15339 0.93900 0.84455 0.98573 1.25600 0.95806 0.92714 0.95001 1.81167 1.05367 1.11330 1.06465 0.88861 0.95536 0.94827 0.92543 0.75526 0.82958 0.84373 0.84376 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.29 37.16 0.35 -3.38 16 2 C 0.28 6.50 2.77 -69.08 -0.19 6.31 16 3 H 0.04 1.03 7.81 -51.93 -0.41 0.62 16 4 C -0.53 -13.49 8.76 -34.44 -0.30 -13.79 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -23.61 11.32 55.43 0.63 -22.98 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -1.10 -22.62 5.29 -5.88 -0.03 -22.65 16 13 S 2.68 51.04 4.99 -107.50 -0.54 50.51 16 14 O -0.96 -19.50 16.35 -57.17 -0.93 -20.44 16 15 O -0.97 -19.81 16.81 -57.17 -0.96 -20.77 16 16 C -0.63 -10.33 5.72 -39.17 -0.22 -10.55 16 17 C -0.02 -0.26 9.54 -39.64 -0.38 -0.64 16 18 C -0.11 -1.22 10.04 -39.49 -0.40 -1.61 16 19 C -0.07 -0.71 10.03 -39.64 -0.40 -1.11 16 20 C -0.09 -1.11 9.76 -39.17 -0.38 -1.49 16 21 C 0.08 1.28 5.73 -106.93 -0.61 0.67 16 22 C 0.23 3.99 13.18 -22.47 -0.30 3.69 16 23 N -0.37 -7.05 18.54 41.83 0.78 -6.28 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 25 H 0.03 0.58 7.74 -51.93 -0.40 0.18 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.41 8.11 8.84 -34.47 -0.30 7.80 16 29 H 0.15 1.95 7.33 -52.48 -0.38 1.57 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -31.20 300.51 -7.53 -38.73 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.05 Total: 4.23 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.93 Total: -20.27 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 1.37 Total: -51.90 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.90 Total: -41.21 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -0.54 Total: 50.51 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.20 -7.53 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.667 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds