Wall clock time and date at job start Tue Mar 31 2020 01:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47097 * 2 1 4 4 C 1.50695 * 109.47120 * 120.00256 * 2 1 3 5 5 H 1.08002 * 119.99818 * 120.00073 * 4 2 1 6 6 C 1.37873 * 120.00557 * 299.99675 * 4 2 1 7 7 N 1.31522 * 119.99451 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00568 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47007 * 90.00213 * 8 6 4 10 10 H 1.48504 * 109.47374 * 210.00096 * 8 6 4 11 11 H 1.48502 * 109.47213 * 330.00413 * 8 6 4 12 12 N 1.46505 * 109.47038 * 240.00189 * 2 1 3 13 13 S 1.65598 * 119.99746 * 95.96026 * 12 2 1 14 14 O 1.42099 * 106.40612 * 310.67142 * 13 12 2 15 15 O 1.42094 * 106.40326 * 177.74916 * 13 12 2 16 16 C 1.76200 * 107.21961 * 64.20989 * 13 12 2 17 17 C 1.37965 * 120.08235 * 244.29070 * 16 13 12 18 18 C 1.38340 * 120.15868 * 179.97438 * 17 16 13 19 19 C 1.38387 * 120.29795 * 359.97438 * 18 17 16 20 20 C 1.37920 * 120.15732 * 359.97438 * 19 18 17 21 21 C 1.39614 * 120.07498 * 64.26588 * 16 13 12 22 22 C 1.43202 * 120.15087 * 0.02562 * 21 16 13 23 23 N 4.55418 * 145.02561 * 221.42714 * 2 1 3 24 24 H 1.09001 * 109.46923 * 299.99784 * 1 2 3 25 25 H 1.08995 * 109.47518 * 59.99551 * 1 2 3 26 26 H 1.09002 * 109.47450 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99932 * 179.97438 * 7 6 4 28 28 H 0.96995 * 119.99674 * 275.96371 * 12 2 1 29 29 H 1.08006 * 119.91735 * 0.25842 * 17 16 13 30 30 H 1.07990 * 119.84979 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.92173 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.08150 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5462 4.4122 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 7 2.0183 -0.6906 -1.1962 13 16 2.4347 0.1793 -2.5424 14 8 1.3531 1.0647 -2.7985 15 8 2.9123 -0.7603 -3.4954 16 6 3.8113 1.1888 -2.1060 17 6 3.6915 2.5632 -2.1153 18 6 4.7712 3.3573 -1.7724 19 6 5.9777 2.7799 -1.4174 20 6 6.1112 1.4072 -1.4028 21 6 5.0258 0.5997 -1.7494 22 6 5.1575 -0.8263 -1.7376 23 7 5.2617 -1.9574 -1.7273 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7082 1.1607 3.4845 28 1 2.0977 -1.6573 -1.1997 29 1 2.7512 3.0201 -2.3865 30 1 4.6720 4.4326 -1.7817 31 1 6.8167 3.4056 -1.1512 32 1 7.0532 0.9579 -1.1252 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:40 Heat of formation + Delta-G solvation = -39.046689 kcal Electronic energy + Delta-G solvation = -19877.043425 eV Core-core repulsion = 16736.081185 eV Total energy + Delta-G solvation = -3140.962241 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43486 -38.49185 -37.61287 -37.22782 -37.00207 -34.15734 -32.58508 -32.35706 -30.16827 -27.24118 -25.24285 -24.23945 -22.86650 -20.91267 -20.09771 -19.18427 -18.27146 -17.97284 -17.29704 -16.77129 -16.14294 -16.02502 -15.46003 -15.38246 -15.21637 -14.54335 -14.32452 -14.14731 -14.02580 -13.61697 -13.50278 -13.44106 -13.28780 -13.14948 -13.04205 -12.85511 -12.49626 -12.41535 -12.24242 -12.04973 -11.84687 -11.14990 -10.61520 -10.44810 -10.18277 -10.05471 -8.15063 -6.28779 -0.72951 -0.50415 0.04730 1.37557 1.41434 1.44608 1.53232 1.81080 1.98860 2.42271 2.49322 2.60165 2.79869 3.14230 3.31056 3.82338 4.03156 4.27425 4.30685 4.45099 4.45808 4.79451 4.87993 4.97817 5.09271 5.14541 5.16475 5.28997 5.57251 5.73518 5.75619 5.95430 6.04925 6.20453 6.32738 6.79200 7.40451 8.90061 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.007656 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.933457 B = 3656.605229 C = 4026.046733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.282 3.718 3 H 0.033 0.967 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.277 1.277 12 N -1.103 6.103 13 S 2.685 3.315 14 O -0.977 6.977 15 O -0.992 6.992 16 C -0.645 4.645 17 C -0.035 4.035 18 C -0.101 4.101 19 C -0.054 4.054 20 C -0.085 4.085 21 C 0.047 3.953 22 C 0.236 3.764 23 N -0.412 5.412 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.267 0.733 28 H 0.411 0.589 29 H 0.155 0.845 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 8.525 -5.945 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.177 3.823 3 H 0.051 0.949 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.863 5.863 13 S 2.777 3.223 14 O -0.967 6.967 15 O -0.982 6.982 16 C -0.737 4.737 17 C -0.055 4.055 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.106 4.106 21 C 0.043 3.957 22 C -0.080 4.080 23 N -0.087 5.087 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.245 0.755 29 H 0.172 0.828 30 H 0.198 0.802 31 H 0.207 0.793 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.793 7.038 -6.613 13.754 hybrid contribution 0.321 -0.557 1.263 1.417 sum 10.114 6.481 -5.350 13.149 Atomic orbital electron populations 1.22145 0.98206 0.99908 1.00935 1.18298 0.91320 0.91593 0.81101 0.94906 1.21474 1.32074 1.13199 0.91055 0.92575 1.25528 0.94968 0.95615 1.01299 1.69966 1.36524 1.23447 1.24587 0.85643 0.78324 0.78848 0.79330 1.19854 1.20579 1.20154 1.55472 1.81089 1.18551 1.31161 1.01736 0.74359 0.73452 0.72727 1.93532 1.52054 1.66910 1.84220 1.93548 1.82321 1.62397 1.59909 1.30745 1.15007 1.10043 1.17877 1.21287 1.01452 0.90025 0.92705 1.22044 0.91806 1.02557 0.95627 1.21984 0.98989 0.93689 0.92497 1.21739 0.97533 0.94651 0.96725 1.15598 0.95162 0.83606 1.01342 1.26124 0.94706 0.93355 0.93786 1.81148 1.06739 1.12475 1.08335 0.90566 0.94924 0.94735 0.92340 0.75509 0.82763 0.80185 0.79264 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.34 9.29 71.98 0.67 -6.67 16 2 C 0.28 13.55 2.77 44.24 0.12 13.68 16 3 H 0.03 1.64 7.81 -2.39 -0.02 1.62 16 4 C -0.54 -27.91 8.76 25.60 0.22 -27.69 16 5 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.03 1.40 5.30 84.65 0.45 1.84 16 7 N -0.91 -48.28 11.32 21.45 0.24 -48.04 16 8 Si 0.95 41.51 29.54 68.60 2.03 43.54 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 N -1.10 -46.90 5.29 -172.52 -0.91 -47.81 16 13 S 2.68 105.07 4.99 -56.49 -0.28 104.79 16 14 O -0.98 -40.89 16.35 -128.00 -2.09 -42.98 16 15 O -0.99 -41.85 16.81 -128.00 -2.15 -44.00 16 16 C -0.65 -20.94 5.72 22.54 0.13 -20.81 16 17 C -0.04 -0.91 9.54 22.23 0.21 -0.70 16 18 C -0.10 -1.69 10.04 22.33 0.22 -1.46 16 19 C -0.05 -0.76 10.03 22.23 0.22 -0.54 16 20 C -0.09 -1.72 9.76 22.54 0.22 -1.50 16 21 C 0.05 1.44 5.73 -21.36 -0.12 1.31 16 22 C 0.24 8.42 13.18 88.33 1.16 9.58 16 23 N -0.41 -16.13 18.54 19.00 0.35 -15.78 16 24 H 0.08 3.94 6.07 -2.39 -0.01 3.92 16 25 H 0.03 1.47 7.74 -2.39 -0.02 1.46 16 26 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 28 H 0.41 16.99 8.84 -96.75 -0.86 16.13 16 29 H 0.15 3.80 7.33 -2.91 -0.02 3.78 16 30 H 0.18 1.51 8.06 -2.92 -0.02 1.49 16 31 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -68.97 300.51 1.01 -67.96 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.31 Total: 15.27 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.51 Total: -32.95 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -0.32 Total: -111.63 kcal Atomic # 8 Polarization: -82.73 SS G_CDS: -4.24 Total: -86.98 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 105.07 SS G_CDS: -0.28 Total: 104.79 kcal Total: -68.97 1.01 -67.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.918 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds