Wall clock time and date at job start Tue Mar 31 2020 01:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46882 * 2 1 4 4 C 1.50698 * 109.47057 * 239.99914 * 2 1 3 5 5 H 1.08001 * 120.00036 * 239.99514 * 4 2 1 6 6 C 1.37879 * 119.99948 * 60.00196 * 4 2 1 7 7 N 1.31514 * 120.00053 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00175 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46905 * 89.99961 * 8 6 4 10 10 H 1.48493 * 109.47121 * 210.00152 * 8 6 4 11 11 H 1.48504 * 109.46733 * 330.00382 * 8 6 4 12 12 N 1.46504 * 109.46815 * 120.00083 * 2 1 3 13 13 S 1.65600 * 119.99679 * 263.61246 * 12 2 1 14 14 O 1.42094 * 106.40592 * 312.01945 * 13 12 2 15 15 O 1.42104 * 106.40076 * 179.09689 * 13 12 2 16 16 C 1.76207 * 107.21478 * 65.56045 * 13 12 2 17 17 C 1.37972 * 120.07295 * 244.38375 * 16 13 12 18 18 C 1.38337 * 120.15189 * 180.02562 * 17 16 13 19 19 C 1.38390 * 120.30364 * 0.02562 * 18 17 16 20 20 C 1.37934 * 120.15246 * 0.02562 * 19 18 17 21 21 C 1.39606 * 120.07972 * 64.42825 * 16 13 12 22 22 C 1.43199 * 120.15023 * 359.96080 * 21 16 13 23 23 N 4.57688 * 72.30992 * 123.55238 * 2 1 3 24 24 H 1.08996 * 109.47515 * 299.99333 * 1 2 3 25 25 H 1.09001 * 109.47141 * 60.00058 * 1 2 3 26 26 H 1.09005 * 109.46976 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00201 * 180.02562 * 7 6 4 28 28 H 0.96995 * 120.00084 * 83.62347 * 12 2 1 29 29 H 1.08002 * 119.92422 * 0.04600 * 17 16 13 30 30 H 1.07998 * 119.84937 * 180.27846 * 18 17 16 31 31 H 1.07994 * 119.92670 * 180.02562 * 19 18 17 32 32 H 1.07996 * 120.07737 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6907 1.1962 13 16 2.4447 0.1799 2.5388 14 8 3.2813 1.2347 2.0842 15 8 2.8498 -0.7662 3.5186 16 6 0.9787 0.9384 3.1558 17 6 0.8616 2.3131 3.1621 18 6 -0.2884 2.9103 3.6466 19 6 -1.3283 2.1346 4.1284 20 6 -1.2241 0.7592 4.1289 21 6 -0.0665 0.1498 3.6401 22 6 0.0482 -1.2776 3.6367 23 7 0.1393 -2.4100 3.6339 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7082 1.1609 -3.4844 28 1 2.0920 -1.6578 1.2017 29 1 1.6694 2.9244 2.7877 30 1 -0.3767 3.9866 3.6451 31 1 -2.2234 2.6071 4.5048 32 1 -2.0365 0.1550 4.5048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:43 Heat of formation + Delta-G solvation = -16.039693 kcal Electronic energy + Delta-G solvation = -19851.281019 eV Core-core repulsion = 16711.316436 eV Total energy + Delta-G solvation = -3139.964582 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.50513 -36.97923 -36.26742 -35.48285 -35.42476 -32.24104 -31.61983 -31.42260 -28.37514 -25.28216 -24.22788 -23.29106 -20.99248 -19.65343 -18.77128 -17.55544 -17.12456 -16.23941 -15.78787 -15.23383 -15.10278 -14.51025 -14.40812 -14.12421 -13.65359 -13.23399 -12.85850 -12.71914 -12.52212 -12.37063 -12.25209 -11.80626 -11.70279 -11.62102 -11.52440 -11.21846 -11.00832 -10.72619 -10.58045 -10.39149 -10.12793 -9.53118 -9.26817 -9.11509 -8.68292 -8.35274 -6.15376 -4.22122 0.36915 0.83665 0.96745 2.61297 2.85933 3.25582 3.32321 3.35793 3.46850 3.67912 3.71234 4.13117 4.34948 4.49302 4.71974 4.88713 5.08881 5.17638 5.28116 5.38984 5.64078 5.89393 5.93193 6.11514 6.25853 6.55802 6.71118 6.75816 6.94438 7.42099 7.52018 7.60843 7.79032 7.96293 8.21762 8.80103 9.43775 10.90865 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.006351 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.264159 B = 4408.002483 C = 4626.369206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.268 3.732 3 H 0.054 0.946 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.095 6.095 13 S 2.677 3.323 14 O -0.952 6.952 15 O -0.971 6.971 16 C -0.627 4.627 17 C -0.018 4.018 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.094 4.094 21 C 0.077 3.923 22 C 0.223 3.777 23 N -0.368 5.368 24 H 0.012 0.988 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.410 0.590 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 5.232 11.739 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.164 3.836 3 H 0.072 0.928 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.857 5.857 13 S 2.763 3.237 14 O -0.942 6.942 15 O -0.960 6.960 16 C -0.713 4.713 17 C -0.037 4.037 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.115 4.115 21 C 0.073 3.927 22 C -0.093 4.093 23 N -0.043 5.043 24 H 0.031 0.969 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.016 3.894 11.958 13.540 hybrid contribution -0.644 -0.200 -0.890 1.116 sum -5.659 3.694 11.069 12.968 Atomic orbital electron populations 1.22293 0.98548 0.99991 1.00945 1.18672 0.90798 0.93166 0.80937 0.92813 1.21211 1.31932 1.13170 0.89726 0.91695 1.24898 0.94859 0.94999 0.99048 1.69849 1.36258 1.22593 1.23961 0.86436 0.79321 0.79260 0.82058 1.20620 1.21041 1.19746 1.55552 1.83572 1.18876 1.27724 1.02389 0.74060 0.73970 0.73271 1.93581 1.62375 1.57364 1.80870 1.93582 1.80800 1.61399 1.60256 1.31480 1.21240 1.04721 1.13896 1.21026 0.98279 0.92045 0.92373 1.21524 0.93240 1.00867 0.97598 1.21346 0.98673 0.93123 0.95998 1.21256 0.96108 0.95427 0.98726 1.15342 0.94777 0.83931 0.98665 1.25644 0.95464 0.92813 0.95380 1.81194 1.05435 1.11585 1.06056 0.96913 0.88590 0.94799 0.92562 0.75533 0.82875 0.84318 0.84359 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.29 37.16 0.35 -3.17 16 2 C 0.27 6.35 2.91 -69.08 -0.20 6.15 16 3 H 0.05 1.37 7.48 -51.93 -0.39 0.98 16 4 C -0.52 -13.67 8.77 -34.44 -0.30 -13.97 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -1.10 -22.64 5.29 -5.88 -0.03 -22.67 16 13 S 2.68 51.16 5.06 -107.50 -0.54 50.62 16 14 O -0.95 -20.13 16.29 -57.17 -0.93 -21.07 16 15 O -0.97 -19.81 16.80 -57.17 -0.96 -20.77 16 16 C -0.63 -9.87 4.98 -39.17 -0.20 -10.06 16 17 C -0.02 -0.24 9.54 -39.64 -0.38 -0.62 16 18 C -0.11 -1.11 10.04 -39.49 -0.40 -1.50 16 19 C -0.07 -0.65 10.03 -39.64 -0.40 -1.04 16 20 C -0.09 -1.01 9.76 -39.16 -0.38 -1.39 16 21 C 0.08 1.12 5.38 -106.93 -0.58 0.55 16 22 C 0.22 3.71 13.18 -22.47 -0.30 3.42 16 23 N -0.37 -6.67 18.54 41.84 0.78 -5.89 16 24 H 0.01 0.23 6.80 -51.93 -0.35 -0.12 16 25 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.41 8.11 8.84 -34.47 -0.30 7.81 16 29 H 0.15 1.91 7.33 -52.49 -0.38 1.53 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -31.64 298.30 -7.45 -39.09 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.98 Total: 3.86 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.87 Total: -20.04 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 1.37 Total: -51.82 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.89 Total: -41.84 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.54 Total: 50.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.64 -7.45 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.047 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds