Wall clock time and date at job start Tue Mar 31 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.35913 * 116.99828 * 179.97438 * 6 5 3 8 8 C 1.38875 * 119.97737 * 359.72829 * 7 6 5 9 9 C 1.38262 * 120.25043 * 179.71919 * 8 7 6 10 10 C 1.37979 * 120.21908 * 0.55593 * 9 8 7 11 11 C 1.39653 * 119.95585 * 359.72215 * 10 9 8 12 12 C 1.47677 * 120.12817 * 180.02562 * 11 10 9 13 13 O 1.21510 * 119.99766 * 179.97438 * 12 11 10 14 14 O 1.34730 * 120.00138 * 359.97084 * 12 11 10 15 15 C 1.34853 * 117.00286 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99405 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00028 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99931 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47168 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46927 * 119.99825 * 19 17 15 22 22 H 1.48495 * 109.47498 * 240.00055 * 19 17 15 23 23 C 1.38428 * 119.98231 * 180.02562 * 7 6 5 24 24 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 28 28 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 29 29 H 1.07998 * 119.87523 * 359.97438 * 8 7 6 30 30 H 1.08004 * 119.89185 * 180.25088 * 9 8 7 31 31 H 1.08005 * 120.02608 * 179.74479 * 10 9 8 32 32 H 0.97002 * 119.99764 * 180.02562 * 18 17 15 33 33 H 1.08004 * 120.10279 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3076 2.8937 -0.0011 8 6 6.2097 1.8378 0.0051 9 6 7.5702 2.0839 -0.0008 10 6 8.0413 3.3808 -0.0012 11 6 7.1421 4.4493 -0.0016 12 6 7.6422 5.8389 -0.0026 13 8 6.8577 6.7668 -0.0034 14 8 8.9681 6.0777 -0.0025 15 6 9.3577 7.3687 -0.0030 16 1 8.6183 8.1558 -0.0037 17 6 10.7092 7.6859 -0.0035 18 7 11.6089 6.7280 -0.0041 19 14 11.2488 9.4742 -0.0048 20 1 10.0514 10.3526 -0.0044 21 1 12.0623 9.7466 1.2074 22 1 12.0617 9.7451 -1.2176 23 6 5.7686 4.1989 -0.0010 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9563 0.7806 0.8892 28 1 3.9557 0.7809 -0.8908 29 1 5.8471 0.8205 0.0103 30 1 8.2665 1.2584 -0.0001 31 1 9.1047 3.5695 -0.0016 32 1 12.5532 6.9496 -0.0041 33 1 5.0680 5.0209 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052235481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:08 Heat of formation + Delta-G solvation = -165.685324 kcal Electronic energy + Delta-G solvation = -20436.238999 eV Core-core repulsion = 16814.739673 eV Total energy + Delta-G solvation = -3621.499326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95466 -40.00340 -38.93463 -37.26816 -36.59269 -35.14152 -32.24528 -31.13645 -30.61936 -29.22190 -27.25565 -25.71766 -23.60265 -22.24295 -21.64669 -20.14840 -18.62784 -17.77110 -17.56592 -17.24753 -17.20884 -16.26598 -15.76905 -15.73349 -15.06878 -14.71184 -14.53082 -14.35979 -13.77349 -13.63792 -13.60909 -13.09026 -12.57670 -12.52684 -12.33412 -11.72069 -11.53878 -11.38070 -11.21588 -11.11274 -11.00325 -10.67104 -10.48589 -10.43189 -9.87527 -9.12779 -8.79439 -8.64218 -8.14634 -6.50614 -4.12379 1.11099 1.60541 1.79267 1.80704 3.08916 3.16226 3.23549 3.31985 3.42848 3.91878 4.27934 4.27959 4.51914 4.59410 4.63030 4.71609 4.80937 4.93300 5.01716 5.10885 5.13040 5.45392 5.57509 5.68766 5.90372 6.11620 6.26922 6.38236 6.67032 6.78702 6.98682 7.29529 7.34088 7.38782 7.87707 8.65834 8.98377 9.77790 10.66981 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047618 B = 0.002950 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.867102 B = 9487.864422 C =10055.284370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.480 6.480 5 C 0.070 3.930 6 O -0.295 6.295 7 C 0.110 3.890 8 C -0.197 4.197 9 C -0.092 4.092 10 C -0.103 4.103 11 C -0.046 4.046 12 C 0.429 3.571 13 O -0.549 6.549 14 O -0.202 6.202 15 C -0.372 4.372 16 H 0.099 0.901 17 C 0.041 3.959 18 N -0.857 5.857 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.096 4.096 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.271 0.729 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -16.918 0.012 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.365 6.365 5 C -0.006 4.006 6 O -0.209 6.209 7 C 0.066 3.934 8 C -0.216 4.216 9 C -0.110 4.110 10 C -0.122 4.122 11 C -0.047 4.047 12 C 0.277 3.723 13 O -0.448 6.448 14 O -0.109 6.109 15 C -0.448 4.448 16 H 0.117 0.883 17 C -0.164 4.164 18 N -0.493 5.493 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.115 4.115 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.765 -16.243 0.011 21.291 hybrid contribution 0.169 0.598 0.000 0.622 sum -13.596 -15.645 0.011 20.727 Atomic orbital electron populations 1.23331 0.75357 1.03972 1.02966 1.86436 1.24045 1.32476 1.84515 1.23058 0.91111 0.81904 0.73646 1.90746 1.66627 1.36149 1.42958 1.21811 0.88637 0.84698 1.05485 1.86080 1.21159 1.23931 1.89770 1.18609 0.80963 0.93899 0.99931 1.21292 0.94231 0.97797 1.08317 1.20890 0.94399 0.96930 0.98824 1.21607 1.01187 0.91393 0.97999 1.19154 0.92287 0.92150 1.01129 1.20627 0.82944 0.88252 0.80449 1.90645 1.57297 1.45505 1.51318 1.83881 1.21230 1.31144 1.74596 1.21403 0.92141 0.80185 1.51107 0.88295 1.25403 0.94407 1.00479 0.96101 1.69983 1.01518 1.32478 1.45365 0.85566 0.79051 0.80206 0.78195 1.18785 1.20056 1.20053 1.20390 0.94790 0.94488 1.01810 0.91595 0.91588 0.87680 0.87532 0.87532 0.85433 0.85172 0.83703 0.91892 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.08 10.56 -39.26 -0.41 -3.50 16 3 C 0.46 5.06 8.03 36.01 0.29 5.35 16 4 O -0.48 -7.15 16.25 -25.48 -0.41 -7.57 16 5 C 0.07 0.66 5.33 36.01 0.19 0.86 16 6 O -0.30 -4.23 9.67 -39.42 -0.38 -4.61 16 7 C 0.11 1.67 6.68 -39.28 -0.26 1.40 16 8 C -0.20 -2.45 9.03 -39.34 -0.36 -2.81 16 9 C -0.09 -1.25 10.02 -39.67 -0.40 -1.65 16 10 C -0.10 -1.83 9.61 -39.15 -0.38 -2.21 16 11 C -0.05 -0.95 5.87 -105.00 -0.62 -1.56 16 12 C 0.43 11.13 7.84 34.59 0.27 11.40 16 13 O -0.55 -15.43 15.59 -19.27 -0.30 -15.73 16 14 O -0.20 -5.78 8.99 -21.63 -0.19 -5.97 16 15 C -0.37 -10.97 9.65 30.95 0.30 -10.67 16 16 H 0.10 2.94 6.86 -52.49 -0.36 2.58 16 17 C 0.04 1.14 5.50 -17.52 -0.10 1.04 16 18 N -0.86 -24.49 13.67 55.49 0.76 -23.73 16 19 Si 0.95 21.02 29.55 -169.99 -5.02 15.99 16 20 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.10 -1.78 9.53 -39.00 -0.37 -2.15 16 24 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 25 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.11 0.72 7.64 -51.93 -0.40 0.33 16 28 H 0.11 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 30 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.15 2.72 7.61 -52.48 -0.40 2.32 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.14 2.79 7.65 -52.48 -0.40 2.39 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -35.60 307.74 -4.80 -40.40 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.11 Total: -0.21 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -0.36 Total: 0.29 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.76 Total: -23.73 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.70 Total: -37.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.60 -4.80 -40.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052235481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.286 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds