Wall clock time and date at job start Tue Mar 31 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.53731 * 2 1 4 4 C 1.38421 * 122.53935 * 87.16905 * 3 2 1 5 5 C 1.33388 * 114.92066 * 179.72463 * 4 3 2 6 6 S 1.75885 * 109.59458 * 0.27968 * 5 4 3 7 7 C 1.33395 * 122.53872 * 267.42964 * 3 2 1 8 8 N 1.47311 * 110.73321 * 122.92258 * 2 1 3 9 9 C 1.34521 * 106.62207 * 118.58437 * 8 2 1 10 10 O 1.21540 * 123.77532 * 180.02562 * 9 8 2 11 11 N 1.33802 * 112.45864 * 0.02562 * 9 8 2 12 12 C 1.46495 * 124.17834 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47217 * 269.95787 * 12 11 9 14 14 H 1.08004 * 120.00121 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00082 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46714 * 60.00698 * 17 15 13 19 19 H 1.48505 * 109.46962 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47470 * 300.00546 * 17 15 13 21 21 C 1.34769 * 111.64024 * 359.97438 * 11 9 8 22 22 O 1.21229 * 127.15619 * 179.97438 * 21 11 9 23 23 H 1.08998 * 109.46987 * 59.99624 * 1 2 3 24 24 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46647 * 300.00099 * 1 2 3 26 26 H 1.08002 * 122.54201 * 0.02562 * 4 3 2 27 27 H 1.08005 * 125.20509 * 180.28882 * 5 4 3 28 28 H 1.07998 * 125.20353 * 359.97100 * 7 3 2 29 29 H 0.97001 * 126.68739 * 298.57411 * 8 2 1 30 30 H 1.09005 * 109.47269 * 29.95946 * 12 11 9 31 31 H 1.09007 * 109.46830 * 149.95677 * 12 11 9 32 32 H 0.96996 * 119.99890 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.2659 2.1286 1.1655 5 6 2.7433 3.3616 0.9892 6 16 2.9489 3.6743 -0.7294 7 6 2.3576 2.0654 -1.1234 8 7 2.0515 -0.7488 1.1565 9 6 2.7645 -1.7758 0.6601 10 8 3.3357 -2.5976 1.3498 11 7 2.7747 -1.7917 -0.6778 12 6 3.4718 -2.7970 -1.4836 13 6 4.8778 -2.3314 -1.7615 14 1 5.2183 -1.3816 -1.3760 15 6 5.7300 -3.1182 -2.5070 16 7 5.3156 -4.2749 -2.9761 17 14 7.4726 -2.5406 -2.8521 18 1 8.1935 -2.3479 -1.5681 19 1 8.1793 -3.5598 -3.6689 20 1 7.4303 -1.2549 -3.5939 21 6 2.0635 -0.7691 -1.1924 22 8 1.8877 -0.5164 -2.3649 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 2.0614 1.7193 2.1438 27 1 2.9693 4.0609 1.7806 28 1 2.2565 1.6664 -2.1219 29 1 1.9087 -0.5415 2.0933 30 1 3.5026 -3.7412 -0.9397 31 1 2.9427 -2.9378 -2.4262 32 1 5.9150 -4.8282 -3.5008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060346549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:49 Heat of formation + Delta-G solvation = -4.548465 kcal Electronic energy + Delta-G solvation = -19918.414346 eV Core-core repulsion = 16778.948061 eV Total energy + Delta-G solvation = -3139.466285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03420 -38.41606 -37.72440 -35.48064 -34.51517 -32.53501 -30.84770 -28.99863 -27.86271 -24.93833 -24.10130 -22.99291 -21.64079 -19.74911 -18.92444 -18.11189 -17.16310 -16.79311 -16.05867 -15.55717 -15.09973 -14.96451 -14.67758 -14.15852 -13.73099 -13.63553 -13.16978 -12.86112 -12.56720 -12.49930 -12.45010 -12.26685 -11.92134 -11.54159 -11.14438 -10.95361 -10.74332 -10.43884 -10.06361 -9.90574 -9.56088 -9.23281 -8.85349 -8.60216 -8.52014 -8.46894 -6.14493 -4.19657 0.94476 1.57477 1.89124 2.18399 2.55371 2.93556 3.31218 3.33853 3.37737 3.61457 3.74727 4.33668 4.41613 4.54678 4.90911 5.02406 5.21677 5.25168 5.47618 5.53271 5.58234 5.88442 5.89916 5.94957 6.26698 6.31439 6.56271 7.02098 7.14459 7.20152 7.78335 7.92152 8.01676 8.04106 8.71005 8.85316 9.45176 10.94937 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.006473 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.461977 B = 4324.365189 C = 5058.407822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.180 3.820 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.218 4.218 6 S 0.107 5.893 7 C -0.184 4.184 8 N -0.729 5.729 9 C 0.702 3.298 10 O -0.538 6.538 11 N -0.554 5.554 12 C 0.248 3.752 13 C -0.535 4.535 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.275 1.275 21 C 0.532 3.468 22 O -0.470 6.470 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.165 0.835 28 H 0.180 0.820 29 H 0.430 0.570 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 14.572 7.455 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.086 3.914 3 C -0.124 4.124 4 C -0.146 4.146 5 C -0.353 4.353 6 S 0.371 5.629 7 C -0.320 4.320 8 N -0.394 5.394 9 C 0.403 3.597 10 O -0.411 6.411 11 N -0.297 5.297 12 C 0.131 3.869 13 C -0.573 4.573 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.730 3.270 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.200 1.200 21 C 0.317 3.683 22 O -0.341 6.341 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.157 0.843 27 H 0.183 0.817 28 H 0.197 0.803 29 H 0.274 0.726 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.020 15.222 6.124 18.724 hybrid contribution 0.546 -0.818 1.082 1.462 sum -8.473 14.404 7.206 18.199 Atomic orbital electron populations 1.21941 0.90071 1.03609 1.04036 1.19867 0.96274 0.88919 0.86379 1.18495 1.05492 0.95240 0.93137 1.19805 1.02271 0.93695 0.98791 1.25533 1.09270 1.01220 0.99299 1.84266 1.63969 1.14059 1.00642 1.25885 1.05072 0.97465 1.03579 1.45628 1.56276 1.29397 1.08132 1.15965 0.79191 0.81915 0.82596 1.90963 1.47537 1.41326 1.61286 1.46807 1.46899 1.28715 1.07259 1.19626 0.91777 0.85422 0.90035 1.21205 0.96313 1.05564 1.34231 0.92266 1.24884 0.99034 0.94641 0.95103 1.69909 1.36651 1.11055 1.35282 0.86467 0.83562 0.78493 0.78462 1.19992 1.20909 1.20011 1.20350 0.77892 0.80869 0.89147 1.90692 1.57920 1.68965 1.16538 0.89952 0.91046 0.90638 0.84297 0.81732 0.80288 0.72645 0.92718 0.92910 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.97 37.16 0.33 -1.18 16 2 C 0.18 2.62 1.22 -133.24 -0.16 2.46 16 3 C -0.11 -1.51 4.77 -106.25 -0.51 -2.01 16 4 C -0.12 -1.29 9.55 -41.21 -0.39 -1.69 16 5 C -0.22 -2.25 11.23 29.04 0.33 -1.93 16 6 S 0.11 1.23 23.34 -107.50 -2.51 -1.28 16 7 C -0.18 -2.61 10.26 29.04 0.30 -2.32 16 8 N -0.73 -10.83 5.47 -54.02 -0.30 -11.12 16 9 C 0.70 14.59 8.62 -88.02 -0.76 13.83 16 10 O -0.54 -13.05 17.48 5.33 0.09 -12.95 16 11 N -0.55 -12.45 2.59 -122.02 -0.32 -12.77 16 12 C 0.25 6.64 5.45 -5.20 -0.03 6.61 16 13 C -0.53 -15.48 9.39 -34.44 -0.32 -15.80 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.53 10.50 6.51 -10.55 -0.07 10.43 16 22 O -0.47 -10.10 16.01 5.60 0.09 -10.01 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.14 1.24 7.58 -52.49 -0.40 0.84 16 27 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.18 2.79 6.31 -52.49 -0.33 2.46 16 29 H 0.43 4.84 8.52 -40.82 -0.35 4.50 16 30 H 0.05 1.55 7.86 -51.93 -0.41 1.14 16 31 H 0.05 1.46 8.00 -51.93 -0.42 1.05 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -33.32 297.33 -7.26 -40.58 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.14 Total: 1.42 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -1.38 Total: 10.22 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.13 Total: -49.51 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.18 Total: -22.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.32 -7.26 -40.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060346549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.028 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds