Wall clock time and date at job start Tue Mar 31 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.53731 * 2 1 4 4 C 1.38421 * 122.53935 * 87.16905 * 3 2 1 5 5 C 1.33388 * 114.92066 * 179.72463 * 4 3 2 6 6 S 1.75885 * 109.59458 * 0.27968 * 5 4 3 7 7 C 1.33395 * 122.53872 * 267.42964 * 3 2 1 8 8 N 1.47311 * 110.73321 * 122.92258 * 2 1 3 9 9 C 1.34521 * 106.62207 * 118.58437 * 8 2 1 10 10 O 1.21540 * 123.77532 * 180.02562 * 9 8 2 11 11 N 1.33802 * 112.45864 * 0.02562 * 9 8 2 12 12 C 1.46495 * 124.17834 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47217 * 269.95787 * 12 11 9 14 14 H 1.08004 * 120.00121 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00082 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46714 * 60.00698 * 17 15 13 19 19 H 1.48505 * 109.46962 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47470 * 300.00546 * 17 15 13 21 21 C 1.34769 * 111.64024 * 359.97438 * 11 9 8 22 22 O 1.21229 * 127.15619 * 179.97438 * 21 11 9 23 23 H 1.08998 * 109.46987 * 59.99624 * 1 2 3 24 24 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46647 * 300.00099 * 1 2 3 26 26 H 1.08002 * 122.54201 * 0.02562 * 4 3 2 27 27 H 1.08005 * 125.20509 * 180.28882 * 5 4 3 28 28 H 1.07998 * 125.20353 * 359.97100 * 7 3 2 29 29 H 0.97001 * 126.68739 * 298.57411 * 8 2 1 30 30 H 1.09005 * 109.47269 * 29.95946 * 12 11 9 31 31 H 1.09007 * 109.46830 * 149.95677 * 12 11 9 32 32 H 0.96996 * 119.99890 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.2659 2.1286 1.1655 5 6 2.7433 3.3616 0.9892 6 16 2.9489 3.6743 -0.7294 7 6 2.3576 2.0654 -1.1234 8 7 2.0515 -0.7488 1.1565 9 6 2.7645 -1.7758 0.6601 10 8 3.3357 -2.5976 1.3498 11 7 2.7747 -1.7917 -0.6778 12 6 3.4718 -2.7970 -1.4836 13 6 4.8778 -2.3314 -1.7615 14 1 5.2183 -1.3816 -1.3760 15 6 5.7300 -3.1182 -2.5070 16 7 5.3156 -4.2749 -2.9761 17 14 7.4726 -2.5406 -2.8521 18 1 8.1935 -2.3479 -1.5681 19 1 8.1793 -3.5598 -3.6689 20 1 7.4303 -1.2549 -3.5939 21 6 2.0635 -0.7691 -1.1924 22 8 1.8877 -0.5164 -2.3649 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 2.0614 1.7193 2.1438 27 1 2.9693 4.0609 1.7806 28 1 2.2565 1.6664 -2.1219 29 1 1.9087 -0.5415 2.0933 30 1 3.5026 -3.7412 -0.9397 31 1 2.9427 -2.9378 -2.4262 32 1 5.9150 -4.8282 -3.5008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060346549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:48 Heat of formation + Delta-G solvation = -28.099701 kcal Electronic energy + Delta-G solvation = -19919.435604 eV Core-core repulsion = 16778.948061 eV Total energy + Delta-G solvation = -3140.487544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.56568 -39.84105 -39.09730 -37.05754 -36.24050 -34.56519 -32.02496 -30.06780 -29.80916 -26.24118 -25.72383 -24.57623 -23.06432 -21.30498 -20.01507 -19.30166 -19.02485 -18.41556 -17.41833 -17.27525 -16.87496 -16.41030 -16.06508 -15.89730 -15.20701 -15.01957 -14.54558 -14.09613 -13.92368 -13.72062 -13.60030 -13.42173 -13.38776 -13.18318 -12.87550 -12.71462 -12.41504 -12.03351 -11.90213 -11.74025 -11.13509 -10.73561 -10.70898 -10.44165 -9.79455 -9.40450 -8.35526 -6.50439 -0.00889 0.49694 0.75099 1.01694 1.31884 1.37135 1.37828 1.47129 1.58007 2.06565 2.28243 2.34386 2.90928 2.97882 3.44738 3.82720 4.12642 4.24084 4.44237 4.59919 4.65944 4.67028 4.69875 4.94075 5.02237 5.03767 5.09359 5.34051 5.38664 5.53597 5.81115 5.84617 6.26347 6.41939 6.55513 7.12923 7.24303 8.74252 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.006473 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.461977 B = 4324.365189 C = 5058.407822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.195 3.805 3 C -0.113 4.113 4 C -0.127 4.127 5 C -0.201 4.201 6 S 0.126 5.874 7 C -0.220 4.220 8 N -0.694 5.694 9 C 0.699 3.301 10 O -0.581 6.581 11 N -0.571 5.571 12 C 0.264 3.736 13 C -0.558 4.558 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.920 5.920 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.267 1.267 21 C 0.520 3.480 22 O -0.496 6.496 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.169 0.831 27 H 0.200 0.800 28 H 0.155 0.845 29 H 0.452 0.548 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 17.081 9.241 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.102 3.898 3 C -0.128 4.128 4 C -0.156 4.156 5 C -0.336 4.336 6 S 0.390 5.610 7 C -0.357 4.357 8 N -0.361 5.361 9 C 0.400 3.600 10 O -0.457 6.457 11 N -0.315 5.315 12 C 0.144 3.856 13 C -0.596 4.596 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.192 1.192 21 C 0.308 3.692 22 O -0.368 6.368 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.186 0.814 27 H 0.217 0.783 28 H 0.173 0.827 29 H 0.300 0.700 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.113 17.795 7.941 21.512 hybrid contribution 0.514 -1.542 0.488 1.697 sum -8.599 16.253 8.430 20.227 Atomic orbital electron populations 1.22029 0.86610 1.04344 1.06249 1.19915 0.98427 0.88558 0.82905 1.18569 1.05731 0.94297 0.94171 1.20001 1.02812 0.93887 0.98906 1.25995 1.07159 1.01355 0.99110 1.84209 1.63059 1.11790 1.01952 1.25833 1.07189 0.99696 1.02972 1.45384 1.54179 1.27159 1.09357 1.16058 0.79489 0.82706 0.81758 1.90927 1.49638 1.43272 1.61870 1.46748 1.47532 1.29012 1.08164 1.19036 0.91439 0.85767 0.89331 1.21435 0.97582 1.05540 1.35001 0.93111 1.25826 1.03464 0.94632 0.94516 1.70012 1.38328 1.11987 1.35492 0.85423 0.78088 0.78508 0.78615 1.19422 1.19409 1.19201 1.21294 0.77048 0.80406 0.90435 1.90664 1.58566 1.69358 1.18208 0.89542 0.91105 0.86616 0.81384 0.78284 0.82715 0.70009 0.95368 0.95042 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.97 71.98 0.65 -1.95 16 2 C 0.20 5.41 1.22 2.24 0.00 5.41 16 3 C -0.11 -2.87 4.77 -20.92 -0.10 -2.97 16 4 C -0.13 -2.34 9.55 21.22 0.20 -2.14 16 5 C -0.20 -3.30 11.23 66.72 0.75 -2.55 16 6 S 0.13 2.62 23.34 -56.49 -1.32 1.30 16 7 C -0.22 -6.13 10.26 66.72 0.68 -5.45 16 8 N -0.69 -19.37 5.47 -443.25 -2.43 -21.79 16 9 C 0.70 29.31 8.62 179.44 1.55 30.86 16 10 O -0.58 -28.78 17.48 -3.84 -0.07 -28.84 16 11 N -0.57 -26.65 2.59 -777.21 -2.01 -28.66 16 12 C 0.26 14.90 5.45 85.63 0.47 15.37 16 13 C -0.56 -33.44 9.39 25.60 0.24 -33.20 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 15 C 0.02 0.95 5.46 84.65 0.46 1.41 16 16 N -0.92 -55.78 13.29 21.45 0.28 -55.50 16 17 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 C 0.52 21.03 6.51 87.94 0.57 21.60 16 22 O -0.50 -22.26 16.01 -2.87 -0.05 -22.31 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.17 2.08 7.58 -2.91 -0.02 2.06 16 27 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.16 5.03 6.31 -2.91 -0.02 5.02 16 29 H 0.45 8.67 8.52 -92.71 -0.79 7.88 16 30 H 0.03 1.71 7.86 -2.38 -0.02 1.69 16 31 H 0.03 1.87 8.00 -2.38 -0.02 1.85 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.04 297.33 2.30 -73.75 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.38 Total: 8.06 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 5.47 Total: 26.40 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.15 Total: -105.95 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.11 Total: -51.15 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.32 Total: 1.30 kcal Total: -76.04 2.30 -73.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060346549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.646 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds