Wall clock time and date at job start Tue Mar 31 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99980 * 2 1 4 4 C 1.50705 * 109.47031 * 84.99885 * 3 2 1 5 5 C 1.38379 * 119.92632 * 269.97985 * 4 3 2 6 6 C 1.38342 * 120.30369 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.15304 * 359.67043 * 6 5 4 8 8 C 1.39616 * 119.84009 * 0.60500 * 7 6 5 9 9 C 1.43205 * 120.14614 * 179.69727 * 8 7 6 10 10 N 6.51295 * 129.50455 * 76.41893 * 2 1 3 11 11 C 1.37927 * 119.91836 * 90.00002 * 4 3 2 12 12 S 1.65600 * 120.00090 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40210 * 23.53984 * 12 2 1 14 14 O 1.42100 * 106.40205 * 156.46016 * 12 2 1 15 15 C 1.76197 * 107.21841 * 270.00082 * 12 2 1 16 16 H 1.08009 * 119.99611 * 359.97438 * 15 12 2 17 17 C 1.37875 * 120.00134 * 180.02562 * 15 12 2 18 18 N 1.31515 * 119.99946 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00068 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47226 * 89.99449 * 19 17 15 21 21 H 1.48494 * 109.47211 * 209.99931 * 19 17 15 22 22 H 1.48506 * 109.46992 * 329.99700 * 19 17 15 23 23 H 1.09004 * 109.47250 * 89.99795 * 1 2 3 24 24 H 1.08991 * 109.47122 * 209.99236 * 1 2 3 25 25 H 1.08996 * 109.47045 * 329.99613 * 1 2 3 26 26 H 1.09002 * 109.47230 * 325.00217 * 3 2 1 27 27 H 1.09000 * 109.47739 * 205.00064 * 3 2 1 28 28 H 1.08001 * 119.84560 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.92181 * 180.02562 * 6 5 4 30 30 H 1.07990 * 120.07788 * 180.30317 * 7 6 5 31 31 H 1.08003 * 120.08118 * 0.02562 * 11 4 3 32 32 H 0.97000 * 119.99629 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4155 5 6 1.3729 2.5910 1.9592 6 6 1.4973 3.0522 3.2575 7 6 2.5862 2.6859 4.0216 8 6 3.5700 1.8582 3.4774 9 6 4.7061 1.4793 4.2625 10 7 5.6082 1.1800 4.8847 11 6 3.4384 1.3971 2.1658 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5760 -1.1565 -0.5449 15 6 2.5538 -1.8866 1.6822 16 1 2.1873 -1.2514 2.4751 17 6 3.2266 -3.0509 1.9867 18 7 3.6732 -3.8240 1.0211 19 14 3.5037 -3.5302 3.7708 20 1 2.3648 -4.3575 4.2437 21 1 4.7625 -4.3096 3.8842 22 1 3.6040 -2.3042 4.6029 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6501 2.0043 -0.5894 27 1 3.1858 1.1178 -0.4343 28 1 0.5158 2.8764 1.3672 29 1 0.7375 3.6957 3.6758 30 1 2.6797 3.0427 5.0366 31 1 4.1940 0.7534 1.7400 32 1 4.1462 -4.6433 1.2354 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061942050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:55 Heat of formation + Delta-G solvation = -34.627092 kcal Electronic energy + Delta-G solvation = -19810.278549 eV Core-core repulsion = 16669.507956 eV Total energy + Delta-G solvation = -3140.770593 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.47889 -36.47024 -35.46423 -35.33364 -34.00705 -33.08813 -31.42174 -31.16575 -27.04535 -26.14043 -24.18841 -23.72986 -21.54435 -18.92595 -18.11436 -17.28939 -16.29666 -16.19952 -15.52662 -15.12555 -14.89598 -14.64573 -14.00931 -13.81148 -13.48037 -13.28515 -12.98347 -12.66993 -12.57801 -12.12671 -12.08350 -11.97070 -11.72351 -11.26101 -11.22468 -11.19592 -11.04215 -10.60939 -10.35976 -10.33321 -10.16345 -9.25635 -8.99226 -8.83493 -8.75085 -8.30048 -6.71382 -5.32984 0.90112 1.39121 2.22630 2.86206 3.06355 3.09884 3.14822 3.21584 3.95070 4.05781 4.09118 4.56775 4.63354 4.85299 4.91335 5.12710 5.32064 5.38134 5.60781 5.64821 5.74420 5.81365 5.97544 6.05468 6.14319 6.21871 6.32665 6.35463 6.42127 6.55014 6.74408 6.91218 7.31797 7.48978 7.67325 7.97669 8.88921 10.22222 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.009801 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.203609 B = 2856.034363 C = 4253.776668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.012 6.012 3 C 0.158 3.842 4 C -0.102 4.102 5 C -0.077 4.077 6 C -0.129 4.129 7 C -0.074 4.074 8 C -0.032 4.032 9 C 0.261 3.739 10 N -0.425 5.425 11 C -0.041 4.041 12 S 2.710 3.290 13 O -1.002 7.002 14 O -1.003 7.003 15 C -1.014 5.014 16 H 0.103 0.897 17 C 0.138 3.862 18 N -0.845 5.845 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.262 1.262 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 13.849 2.282 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.846 5.846 3 C 0.032 3.968 4 C -0.104 4.104 5 C -0.096 4.096 6 C -0.147 4.147 7 C -0.095 4.095 8 C -0.036 4.036 9 C -0.054 4.054 10 N -0.100 5.100 11 C -0.063 4.063 12 S 2.810 3.190 13 O -0.993 6.993 14 O -0.993 6.993 15 C -1.148 5.148 16 H 0.121 0.879 17 C -0.080 4.080 18 N -0.475 5.475 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.186 1.186 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.162 0.838 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.794 12.766 2.338 13.835 hybrid contribution -0.316 -0.207 1.501 1.548 sum -5.110 12.559 3.840 14.092 Atomic orbital electron populations 1.21272 0.79936 1.02395 1.00880 1.57997 1.14309 1.21380 1.90896 1.20134 0.98955 0.86495 0.91213 1.20402 0.94247 0.97492 0.98223 1.21266 0.97639 0.95531 0.95168 1.20981 0.97989 1.01306 0.94413 1.21096 0.92903 0.95844 0.99630 1.15997 0.91644 1.02739 0.93191 1.25718 0.93066 0.93357 0.93307 1.81186 1.10820 1.08593 1.09446 1.21395 0.97935 0.95291 0.91633 1.00705 0.71831 0.69731 0.76684 1.93363 1.67229 1.57639 1.81037 1.93347 1.40857 1.84028 1.81084 1.30563 1.50001 1.16792 1.17438 0.87865 1.24669 0.90141 0.93430 0.99793 1.69887 1.31083 1.12797 1.33696 0.86309 0.78526 0.79444 0.82328 1.19083 1.19966 1.18615 0.93547 0.90982 0.92307 0.89996 0.87963 0.85466 0.85287 0.85454 0.83835 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 10.31 59.85 0.62 2.15 16 2 N -1.01 -18.73 3.17 -123.05 -0.39 -19.12 16 3 C 0.16 2.36 5.78 -5.19 -0.03 2.33 16 4 C -0.10 -1.42 5.45 -104.68 -0.57 -1.99 16 5 C -0.08 -0.83 9.40 -39.49 -0.37 -1.20 16 6 C -0.13 -1.26 10.03 -39.64 -0.40 -1.66 16 7 C -0.07 -0.84 9.76 -39.17 -0.38 -1.22 16 8 C -0.03 -0.47 5.73 -106.93 -0.61 -1.08 16 9 C 0.26 4.36 15.33 -22.47 -0.34 4.02 16 10 N -0.43 -7.94 18.54 41.83 0.78 -7.16 16 11 C -0.04 -0.66 9.41 -39.17 -0.37 -1.02 16 12 S 2.71 68.97 4.93 -107.50 -0.53 68.44 16 13 O -1.00 -28.57 17.09 -57.17 -0.98 -29.55 16 14 O -1.00 -27.64 16.57 -57.17 -0.95 -28.59 16 15 C -1.01 -26.79 9.74 30.60 0.30 -26.50 16 16 H 0.10 2.52 7.81 -52.48 -0.41 2.11 16 17 C 0.14 3.79 5.46 -17.82 -0.10 3.70 16 18 N -0.84 -24.58 13.19 55.43 0.73 -23.85 16 19 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.18 7.79 -51.93 -0.40 0.78 16 25 H 0.06 0.67 7.54 -51.93 -0.39 0.27 16 26 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 27 H 0.10 1.64 6.86 -51.93 -0.36 1.29 16 28 H 0.13 1.04 7.83 -52.49 -0.41 0.63 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.14 2.55 8.06 -52.48 -0.42 2.13 16 32 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -34.92 307.26 -7.21 -42.12 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.22 Total: -0.43 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.26 Total: -22.48 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 1.12 Total: -50.14 kcal Atomic # 8 Polarization: -56.22 SS G_CDS: -1.92 Total: -58.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 68.97 SS G_CDS: -0.53 Total: 68.44 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.92 -7.21 -42.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061942050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.494 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds