Wall clock time and date at job start Tue Mar 31 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99980 * 2 1 4 4 C 1.50705 * 109.47031 * 84.99885 * 3 2 1 5 5 C 1.38379 * 119.92632 * 269.97985 * 4 3 2 6 6 C 1.38342 * 120.30369 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.15304 * 359.67043 * 6 5 4 8 8 C 1.39616 * 119.84009 * 0.60500 * 7 6 5 9 9 C 1.43205 * 120.14614 * 179.69727 * 8 7 6 10 10 N 6.51295 * 129.50455 * 76.41893 * 2 1 3 11 11 C 1.37927 * 119.91836 * 90.00002 * 4 3 2 12 12 S 1.65600 * 120.00090 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40210 * 23.53984 * 12 2 1 14 14 O 1.42100 * 106.40205 * 156.46016 * 12 2 1 15 15 C 1.76197 * 107.21841 * 270.00082 * 12 2 1 16 16 H 1.08009 * 119.99611 * 359.97438 * 15 12 2 17 17 C 1.37875 * 120.00134 * 180.02562 * 15 12 2 18 18 N 1.31515 * 119.99946 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00068 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47226 * 89.99449 * 19 17 15 21 21 H 1.48494 * 109.47211 * 209.99931 * 19 17 15 22 22 H 1.48506 * 109.46992 * 329.99700 * 19 17 15 23 23 H 1.09004 * 109.47250 * 89.99795 * 1 2 3 24 24 H 1.08991 * 109.47122 * 209.99236 * 1 2 3 25 25 H 1.08996 * 109.47045 * 329.99613 * 1 2 3 26 26 H 1.09002 * 109.47230 * 325.00217 * 3 2 1 27 27 H 1.09000 * 109.47739 * 205.00064 * 3 2 1 28 28 H 1.08001 * 119.84560 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.92181 * 180.02562 * 6 5 4 30 30 H 1.07990 * 120.07788 * 180.30317 * 7 6 5 31 31 H 1.08003 * 120.08118 * 0.02562 * 11 4 3 32 32 H 0.97000 * 119.99629 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4155 5 6 1.3729 2.5910 1.9592 6 6 1.4973 3.0522 3.2575 7 6 2.5862 2.6859 4.0216 8 6 3.5700 1.8582 3.4774 9 6 4.7061 1.4793 4.2625 10 7 5.6082 1.1800 4.8847 11 6 3.4384 1.3971 2.1658 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4063 -0.5455 14 8 3.5760 -1.1565 -0.5449 15 6 2.5538 -1.8866 1.6822 16 1 2.1873 -1.2514 2.4751 17 6 3.2266 -3.0509 1.9867 18 7 3.6732 -3.8240 1.0211 19 14 3.5037 -3.5302 3.7708 20 1 2.3648 -4.3575 4.2437 21 1 4.7625 -4.3096 3.8842 22 1 3.6040 -2.3042 4.6029 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6501 2.0043 -0.5894 27 1 3.1858 1.1178 -0.4343 28 1 0.5158 2.8764 1.3672 29 1 0.7375 3.6957 3.6758 30 1 2.6797 3.0427 5.0366 31 1 4.1940 0.7534 1.7400 32 1 4.1462 -4.6433 1.2354 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061942050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:55 Heat of formation + Delta-G solvation = -60.100312 kcal Electronic energy + Delta-G solvation = -19811.383151 eV Core-core repulsion = 16669.507956 eV Total energy + Delta-G solvation = -3141.875194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48825 -37.79563 -37.42321 -36.75738 -36.11238 -35.16373 -32.52705 -32.14296 -28.28315 -28.14042 -25.47401 -24.76691 -22.57416 -20.78869 -19.49243 -18.94617 -18.16199 -17.11435 -17.03993 -16.83266 -16.25207 -16.12613 -15.45107 -15.23045 -14.97645 -14.63494 -14.17489 -14.03612 -13.98041 -13.67770 -13.57852 -13.21400 -13.10415 -13.07988 -12.91618 -12.47666 -12.44833 -12.38050 -12.21464 -12.04007 -11.87775 -11.28486 -10.95983 -9.87404 -9.79983 -9.68366 -8.76488 -7.45037 -0.11871 0.23950 0.54360 1.23113 1.26201 1.38141 1.56871 1.94459 2.13330 2.55785 2.80959 2.91418 3.10093 3.75577 3.91176 4.00731 4.16708 4.27320 4.30878 4.43269 4.58399 4.74224 4.78637 4.93132 4.95599 5.08690 5.10682 5.17855 5.32381 5.43431 5.47131 5.66408 5.93693 5.98549 6.06368 6.40596 6.79906 8.18226 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.009801 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.203609 B = 2856.034363 C = 4253.776668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.006 6.006 3 C 0.151 3.849 4 C -0.116 4.116 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.062 4.062 8 C -0.056 4.056 9 C 0.275 3.725 10 N -0.474 5.474 11 C -0.069 4.069 12 S 2.714 3.286 13 O -1.043 7.043 14 O -1.039 7.039 15 C -1.022 5.022 16 H 0.117 0.883 17 C 0.082 3.918 18 N -0.893 5.893 19 Si 0.966 3.034 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.260 1.260 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 16.747 3.740 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.844 5.844 3 C 0.027 3.973 4 C -0.118 4.118 5 C -0.077 4.077 6 C -0.131 4.131 7 C -0.082 4.082 8 C -0.060 4.060 9 C -0.039 4.039 10 N -0.150 5.150 11 C -0.090 4.090 12 S 2.815 3.185 13 O -1.033 7.033 14 O -1.029 7.029 15 C -1.155 5.155 16 H 0.135 0.865 17 C -0.131 4.131 18 N -0.525 5.525 19 Si 0.786 3.214 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.184 1.184 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.151 0.849 27 H 0.095 0.905 28 H 0.187 0.813 29 H 0.193 0.807 30 H 0.171 0.829 31 H 0.122 0.878 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.802 15.663 3.791 17.904 hybrid contribution 0.523 -0.934 0.991 1.459 sum -7.279 14.729 4.782 17.111 Atomic orbital electron populations 1.21612 0.77363 1.03987 1.02452 1.57419 1.15749 1.20395 1.90800 1.20432 0.98258 0.85664 0.92972 1.20329 0.94859 0.99139 0.97473 1.21710 0.97191 0.93015 0.95812 1.21513 0.97727 1.00259 0.93551 1.21491 0.91953 0.93872 1.00929 1.16144 0.92256 1.04891 0.92692 1.26251 0.92966 0.92163 0.92530 1.81173 1.12195 1.10404 1.11212 1.21221 0.98574 0.96444 0.92810 1.00150 0.71267 0.70823 0.76225 1.93300 1.67888 1.60550 1.81562 1.93292 1.43109 1.84963 1.81541 1.30902 1.49243 1.16771 1.18628 0.86509 1.25696 0.89845 0.93630 1.03971 1.69976 1.32728 1.13807 1.35958 0.85465 0.79271 0.79437 0.77245 1.17045 1.19360 1.18377 0.92126 0.92885 0.87163 0.84891 0.90503 0.81323 0.80653 0.82877 0.87831 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.46 10.31 127.77 1.32 3.77 16 2 N -1.01 -35.94 3.17 -543.23 -1.72 -37.66 16 3 C 0.15 4.23 5.78 85.64 0.49 4.73 16 4 C -0.12 -2.95 5.45 -19.90 -0.11 -3.06 16 5 C -0.06 -0.92 9.40 22.33 0.21 -0.71 16 6 C -0.11 -1.50 10.03 22.23 0.22 -1.28 16 7 C -0.06 -1.15 9.76 22.54 0.22 -0.93 16 8 C -0.06 -1.59 5.73 -21.36 -0.12 -1.71 16 9 C 0.27 9.31 15.33 88.33 1.35 10.67 16 10 N -0.47 -18.15 18.54 19.00 0.35 -17.80 16 11 C -0.07 -2.19 9.41 22.54 0.21 -1.98 16 12 S 2.71 141.93 4.93 -56.49 -0.28 141.65 16 13 O -1.04 -61.28 17.09 -128.00 -2.19 -63.47 16 14 O -1.04 -60.21 16.57 -128.00 -2.12 -62.33 16 15 C -1.02 -55.12 9.74 67.73 0.66 -54.46 16 16 H 0.12 5.75 7.81 -2.91 -0.02 5.72 16 17 C 0.08 4.60 5.46 84.65 0.46 5.06 16 18 N -0.89 -53.91 13.19 21.45 0.28 -53.62 16 19 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.05 1.65 7.79 -2.39 -0.02 1.63 16 25 H 0.11 1.84 7.54 -2.39 -0.02 1.82 16 26 H 0.13 2.34 8.05 -2.39 -0.02 2.32 16 27 H 0.08 2.53 6.86 -2.39 -0.02 2.52 16 28 H 0.17 1.33 7.83 -2.91 -0.02 1.31 16 29 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.15 2.06 8.06 -2.92 -0.02 2.03 16 31 H 0.10 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.30 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -82.22 307.26 2.42 -79.80 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.14 Total: 7.83 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.92 Total: -39.89 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -1.09 Total: -109.08 kcal Atomic # 8 Polarization: -121.49 SS G_CDS: -4.31 Total: -125.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 141.93 SS G_CDS: -0.28 Total: 141.65 kcal Total: -82.22 2.42 -79.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061942050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.702 kcal (2) G-P(sol) polarization free energy of solvation -82.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds