Wall clock time and date at job start Tue Mar 31 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.84698 * 2 1 4 4 C 1.37927 * 120.14845 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.84586 * 0.02562 * 4 3 2 6 6 C 1.43203 * 120.14739 * 180.02562 * 5 4 3 7 7 N 4.80106 * 136.85905 * 359.95458 * 3 1 2 8 8 C 1.39608 * 119.70104 * 359.72908 * 5 4 3 9 9 C 1.37966 * 119.84712 * 0.54288 * 8 5 4 10 10 S 1.76198 * 119.92599 * 179.73101 * 9 8 5 11 11 O 1.42097 * 106.40193 * 2.96633 * 10 9 8 12 12 O 1.42102 * 106.40023 * 230.04835 * 10 9 8 13 13 N 1.65599 * 107.21715 * 116.51205 * 10 9 8 14 14 C 1.46500 * 119.99819 * 277.60792 * 13 10 9 15 15 C 1.36937 * 119.99899 * 97.61981 * 13 10 9 16 16 H 1.07987 * 120.00240 * 345.03361 * 15 13 10 17 17 C 1.38816 * 119.99725 * 164.76501 * 15 13 10 18 18 N 1.31624 * 119.99780 * 342.99261 * 17 15 13 19 19 Si 1.86796 * 120.00213 * 162.99748 * 17 15 13 20 20 H 1.48500 * 109.47407 * 59.99410 * 19 17 15 21 21 H 1.48496 * 109.47262 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46726 * 299.99733 * 19 17 15 23 23 H 1.08996 * 109.47302 * 263.69686 * 1 2 3 24 24 H 1.08997 * 109.47146 * 23.69630 * 1 2 3 25 25 H 1.08994 * 109.47266 * 143.69462 * 1 2 3 26 26 H 1.08001 * 119.92455 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.07201 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.07734 * 180.27454 * 8 5 4 29 29 H 1.08990 * 109.47547 * 264.46151 * 14 13 10 30 30 H 1.09007 * 109.46702 * 24.47187 * 14 13 10 31 31 H 1.09005 * 109.46836 * 144.45901 * 14 13 10 32 32 H 0.97005 * 119.99885 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2764 -0.0001 0.0005 6 6 5.7084 -0.0001 0.0016 7 7 6.8443 0.0000 0.0026 8 6 3.5751 -1.2072 0.0057 9 6 2.1955 -1.2000 -0.0005 10 16 1.3084 -2.7224 -0.0012 11 8 2.2823 -3.7542 0.0761 12 8 0.3548 -2.6306 -1.0507 13 7 0.4452 -2.7872 1.4106 14 6 1.0946 -3.2314 2.6464 15 6 -0.8756 -2.4260 1.4227 16 1 -1.2929 -1.8771 0.5916 17 6 -1.6794 -2.7704 2.5007 18 7 -1.2906 -3.7081 3.3385 19 14 -3.3130 -1.9030 2.7625 20 1 -4.1848 -2.1221 1.5805 21 1 -3.9754 -2.4499 3.9737 22 1 -3.0776 -0.4476 2.9409 23 1 -0.3634 -0.1128 1.0214 24 1 -0.3633 0.9410 -0.4130 25 1 -0.3633 -0.8281 -0.6084 26 1 1.6520 2.1335 -0.0004 27 1 4.1112 2.1450 0.0010 28 1 4.1114 -2.1447 0.0102 29 1 0.9044 -4.2942 2.7951 30 1 2.1688 -3.0609 2.5739 31 1 0.6937 -2.6690 3.4898 32 1 -1.8525 -3.9490 4.0917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070430468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:26 Heat of formation + Delta-G solvation = 0.096208 kcal Electronic energy + Delta-G solvation = -19906.582363 eV Core-core repulsion = 16767.317486 eV Total energy + Delta-G solvation = -3139.264877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.51363 -36.69348 -36.36380 -35.66168 -34.97480 -32.81790 -31.30289 -31.23999 -27.64154 -26.23162 -23.64721 -23.12803 -22.35058 -19.72476 -18.37166 -17.15751 -16.71078 -15.91860 -15.71915 -15.42483 -14.52422 -14.46219 -14.15149 -14.04720 -13.36887 -13.25879 -13.02114 -12.93429 -12.67215 -12.12066 -12.10886 -12.00477 -11.70920 -11.42493 -11.29496 -11.27924 -11.01600 -10.91397 -10.65132 -10.38406 -10.12792 -9.93494 -9.35078 -9.18601 -8.70917 -8.07680 -6.25516 -3.88075 0.66500 1.02035 1.31123 2.61299 2.80131 3.18603 3.24817 3.25428 3.68039 3.81701 4.00866 4.33267 4.54214 4.72262 4.79633 5.00156 5.04946 5.18169 5.46100 5.58694 5.73100 5.82973 6.01713 6.10093 6.12309 6.20833 6.38078 6.61096 6.80971 6.85725 7.08651 7.42101 7.46447 7.58394 8.36772 8.92418 9.28105 10.77515 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.006390 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.346290 B = 4381.054223 C = 4770.099825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.065 3.935 3 C -0.151 4.151 4 C -0.026 4.026 5 C -0.072 4.072 6 C 0.263 3.737 7 N -0.428 5.428 8 C 0.027 3.973 9 C -0.684 4.684 10 S 2.665 3.335 11 O -0.977 6.977 12 O -0.961 6.961 13 N -0.840 5.840 14 C 0.132 3.868 15 C -0.330 4.330 16 H 0.114 0.886 17 C 0.044 3.956 18 N -0.875 5.875 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 8.867 -2.789 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.063 3.937 3 C -0.170 4.170 4 C -0.046 4.046 5 C -0.077 4.077 6 C -0.051 4.051 7 N -0.103 5.103 8 C 0.005 3.995 9 C -0.764 4.764 10 S 2.751 3.249 11 O -0.967 6.967 12 O -0.951 6.951 13 N -0.675 5.675 14 C -0.014 4.014 15 C -0.460 4.460 16 H 0.132 0.868 17 C -0.162 4.162 18 N -0.514 5.514 19 Si 0.736 3.264 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.133 0.867 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.165 0.835 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.879 8.192 -3.292 10.087 hybrid contribution -0.904 1.222 0.663 1.658 sum 3.975 9.413 -2.630 10.551 Atomic orbital electron populations 1.22128 0.89424 1.05726 1.06741 1.19926 0.96921 0.91343 0.85513 1.21130 0.93501 0.98312 1.04041 1.21298 0.94408 0.96401 0.92515 1.15994 0.84307 0.95215 1.12143 1.25652 0.92535 0.93662 0.93295 1.81222 1.11970 1.07403 1.09714 1.20976 0.92449 0.97516 0.88535 1.31956 1.05457 1.23216 1.15752 1.03057 0.72700 0.74933 0.74179 1.93491 1.62471 1.53567 1.87219 1.93439 1.60063 1.86769 1.54805 1.52895 1.16746 1.75242 1.22592 1.21182 0.91113 1.01539 0.87544 1.19450 0.82615 1.36704 1.07236 0.86845 1.25052 0.98725 0.95727 0.96698 1.70124 1.38666 1.26551 1.16052 0.86293 0.82339 0.79692 0.78107 1.19742 1.21072 1.19965 0.86707 0.90792 0.86706 0.84429 0.84854 0.83464 0.91751 0.95987 0.91444 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 7.88 36.01 0.28 -2.50 16 2 C 0.06 0.97 5.88 -104.53 -0.61 0.36 16 3 C -0.15 -1.79 9.65 -39.64 -0.38 -2.17 16 4 C -0.03 -0.29 9.76 -39.17 -0.38 -0.67 16 5 C -0.07 -0.96 5.73 -106.93 -0.61 -1.58 16 6 C 0.26 3.68 15.33 -22.47 -0.34 3.34 16 7 N -0.43 -6.65 18.54 41.84 0.78 -5.88 16 8 C 0.03 0.41 9.25 -39.17 -0.36 0.05 16 9 C -0.68 -11.51 5.89 -39.64 -0.23 -11.74 16 10 S 2.67 54.70 4.98 -107.50 -0.54 54.16 16 11 O -0.98 -21.53 16.21 -57.17 -0.93 -22.46 16 12 O -0.96 -21.33 14.47 -57.17 -0.83 -22.16 16 13 N -0.84 -18.68 3.26 -66.69 -0.22 -18.90 16 14 C 0.13 2.86 8.61 59.85 0.52 3.37 16 15 C -0.33 -7.69 7.25 -15.06 -0.11 -7.80 16 16 H 0.11 2.51 5.02 -52.49 -0.26 2.24 16 17 C 0.04 1.05 5.05 -17.43 -0.09 0.96 16 18 N -0.87 -21.96 10.50 55.49 0.58 -21.37 16 19 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H 0.11 1.83 6.53 -51.93 -0.34 1.49 16 24 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 25 H 0.11 2.00 4.03 -51.93 -0.21 1.79 16 26 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.15 2.17 7.33 -52.49 -0.38 1.79 16 29 H 0.06 1.50 7.51 -51.93 -0.39 1.11 16 30 H 0.02 0.41 7.80 -51.93 -0.41 0.00 16 31 H 0.07 1.48 6.94 -51.93 -0.36 1.12 16 32 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -28.34 286.77 -6.94 -35.27 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.75 Total: 1.88 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.33 Total: -18.39 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 1.14 Total: -46.15 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.75 Total: -44.62 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.54 Total: 54.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.34 -6.94 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070430468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.370 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds