Wall clock time and date at job start Tue Mar 31 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.84698 * 2 1 4 4 C 1.37927 * 120.14845 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.84586 * 0.02562 * 4 3 2 6 6 C 1.43203 * 120.14739 * 180.02562 * 5 4 3 7 7 N 4.80106 * 136.85905 * 359.95458 * 3 1 2 8 8 C 1.39608 * 119.70104 * 359.72908 * 5 4 3 9 9 C 1.37966 * 119.84712 * 0.54288 * 8 5 4 10 10 S 1.76198 * 119.92599 * 179.73101 * 9 8 5 11 11 O 1.42097 * 106.40193 * 2.96633 * 10 9 8 12 12 O 1.42102 * 106.40023 * 230.04835 * 10 9 8 13 13 N 1.65599 * 107.21715 * 116.51205 * 10 9 8 14 14 C 1.46500 * 119.99819 * 277.60792 * 13 10 9 15 15 C 1.36937 * 119.99899 * 97.61981 * 13 10 9 16 16 H 1.07987 * 120.00240 * 345.03361 * 15 13 10 17 17 C 1.38816 * 119.99725 * 164.76501 * 15 13 10 18 18 N 1.31624 * 119.99780 * 342.99261 * 17 15 13 19 19 Si 1.86796 * 120.00213 * 162.99748 * 17 15 13 20 20 H 1.48500 * 109.47407 * 59.99410 * 19 17 15 21 21 H 1.48496 * 109.47262 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46726 * 299.99733 * 19 17 15 23 23 H 1.08996 * 109.47302 * 263.69686 * 1 2 3 24 24 H 1.08997 * 109.47146 * 23.69630 * 1 2 3 25 25 H 1.08994 * 109.47266 * 143.69462 * 1 2 3 26 26 H 1.08001 * 119.92455 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.07201 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.07734 * 180.27454 * 8 5 4 29 29 H 1.08990 * 109.47547 * 264.46151 * 14 13 10 30 30 H 1.09007 * 109.46702 * 24.47187 * 14 13 10 31 31 H 1.09005 * 109.46836 * 144.45901 * 14 13 10 32 32 H 0.97005 * 119.99885 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2764 -0.0001 0.0005 6 6 5.7084 -0.0001 0.0016 7 7 6.8443 0.0000 0.0026 8 6 3.5751 -1.2072 0.0057 9 6 2.1955 -1.2000 -0.0005 10 16 1.3084 -2.7224 -0.0012 11 8 2.2823 -3.7542 0.0761 12 8 0.3548 -2.6306 -1.0507 13 7 0.4452 -2.7872 1.4106 14 6 1.0946 -3.2314 2.6464 15 6 -0.8756 -2.4260 1.4227 16 1 -1.2929 -1.8771 0.5916 17 6 -1.6794 -2.7704 2.5007 18 7 -1.2906 -3.7081 3.3385 19 14 -3.3130 -1.9030 2.7625 20 1 -4.1848 -2.1221 1.5805 21 1 -3.9754 -2.4499 3.9737 22 1 -3.0776 -0.4476 2.9409 23 1 -0.3634 -0.1128 1.0214 24 1 -0.3633 0.9410 -0.4130 25 1 -0.3633 -0.8281 -0.6084 26 1 1.6520 2.1335 -0.0004 27 1 4.1112 2.1450 0.0010 28 1 4.1114 -2.1447 0.0102 29 1 0.9044 -4.2942 2.7951 30 1 2.1688 -3.0609 2.5739 31 1 0.6937 -2.6690 3.4898 32 1 -1.8525 -3.9490 4.0917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070430468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:25 Heat of formation + Delta-G solvation = -18.083744 kcal Electronic energy + Delta-G solvation = -19907.370705 eV Core-core repulsion = 16767.317486 eV Total energy + Delta-G solvation = -3140.053219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63500 -38.26570 -37.67155 -37.34314 -36.70844 -33.97791 -33.00093 -32.41802 -28.90281 -27.86370 -25.34442 -24.34090 -23.50168 -21.02704 -19.97361 -18.83229 -18.33180 -17.31087 -16.99219 -16.57222 -16.13629 -16.08296 -15.34181 -15.07586 -14.98848 -14.66313 -14.26129 -14.16936 -14.05917 -13.72451 -13.46265 -13.28436 -13.04482 -13.03888 -12.90578 -12.63711 -12.52737 -12.46103 -12.29341 -12.02896 -11.71884 -11.43272 -10.93337 -10.45178 -9.84944 -9.82164 -8.00899 -5.70824 -0.47025 -0.31501 -0.06901 1.50521 1.57663 1.58733 1.65344 1.70448 2.32377 2.60950 2.68905 2.71576 2.94009 3.28553 3.60441 3.76213 3.80414 3.96762 4.30765 4.42077 4.49888 4.63827 4.80606 4.90253 4.95730 5.08957 5.12026 5.30464 5.32292 5.46378 5.67294 5.74198 5.82817 6.32517 6.60898 7.19919 7.51294 9.02544 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.006390 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.346290 B = 4381.054223 C = 4770.099825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.135 4.135 4 C 0.000 4.000 5 C -0.069 4.069 6 C 0.283 3.717 7 N -0.455 5.455 8 C 0.017 3.983 9 C -0.689 4.689 10 S 2.683 3.317 11 O -1.008 7.008 12 O -0.986 6.986 13 N -0.868 5.868 14 C 0.146 3.854 15 C -0.333 4.333 16 H 0.121 0.879 17 C -0.008 4.008 18 N -0.917 5.917 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.294 1.294 22 H -0.255 1.255 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.182 0.818 27 H 0.179 0.821 28 H 0.143 0.857 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 12.679 -3.514 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.053 3.947 3 C -0.154 4.154 4 C -0.020 4.020 5 C -0.073 4.073 6 C -0.032 4.032 7 N -0.131 5.131 8 C -0.005 4.005 9 C -0.777 4.777 10 S 2.777 3.223 11 O -0.998 6.998 12 O -0.976 6.976 13 N -0.702 5.702 14 C 0.000 4.000 15 C -0.462 4.462 16 H 0.138 0.862 17 C -0.209 4.209 18 N -0.558 5.558 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.220 1.220 22 H -0.180 1.180 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.104 0.896 26 H 0.199 0.801 27 H 0.196 0.804 28 H 0.161 0.839 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.502 11.947 -4.020 13.753 hybrid contribution -0.913 0.122 0.692 1.152 sum 4.588 12.069 -3.328 13.334 Atomic orbital electron populations 1.22070 0.89716 1.06674 1.05844 1.20116 0.96988 0.91882 0.85716 1.21548 0.93764 0.98400 1.01654 1.21826 0.94317 0.97085 0.88805 1.15979 0.83850 0.95320 1.12197 1.25595 0.92362 0.92817 0.92428 1.81260 1.12819 1.08278 1.10704 1.20956 0.91821 0.98645 0.89044 1.30815 1.05643 1.20844 1.20441 1.01623 0.72475 0.74887 0.73318 1.93449 1.63385 1.55612 1.87337 1.93419 1.61238 1.87441 1.55510 1.52698 1.17708 1.78294 1.21508 1.20955 0.92305 0.99518 0.87224 1.19749 0.84010 1.34999 1.07437 0.86187 1.25851 1.01577 0.96402 0.97120 1.70275 1.39768 1.28860 1.16937 0.85372 0.78547 0.79524 0.77242 1.19843 1.22035 1.17957 0.87724 0.86897 0.89567 0.80068 0.80407 0.83882 0.94877 0.93664 0.92090 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.20 7.88 71.24 0.56 -4.64 16 2 C 0.05 1.47 5.88 -19.80 -0.12 1.36 16 3 C -0.14 -2.41 9.65 22.23 0.21 -2.19 16 4 C 0.00 0.00 9.76 22.54 0.22 0.22 16 5 C -0.07 -1.58 5.73 -21.36 -0.12 -1.70 16 6 C 0.28 7.01 15.33 88.33 1.35 8.37 16 7 N -0.45 -13.06 18.54 19.00 0.35 -12.71 16 8 C 0.02 0.50 9.25 22.54 0.21 0.71 16 9 C -0.69 -22.20 5.89 22.23 0.13 -22.07 16 10 S 2.68 112.13 4.98 -56.49 -0.28 111.85 16 11 O -1.01 -45.75 16.21 -128.00 -2.08 -47.83 16 12 O -0.99 -44.71 14.47 -128.00 -1.85 -46.56 16 13 N -0.87 -39.67 3.26 -364.90 -1.19 -40.86 16 14 C 0.15 6.58 8.61 127.77 1.10 7.68 16 15 C -0.33 -15.86 7.25 84.03 0.61 -15.25 16 16 H 0.12 5.39 5.02 -2.92 -0.01 5.37 16 17 C -0.01 -0.41 5.05 84.86 0.43 0.01 16 18 N -0.92 -48.12 10.50 21.65 0.23 -47.89 16 19 Si 0.97 38.50 29.59 68.60 2.03 40.53 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 23 H 0.10 3.17 6.53 -2.39 -0.02 3.15 16 24 H 0.11 2.16 8.04 -2.39 -0.02 2.15 16 25 H 0.09 2.94 4.03 -2.39 -0.01 2.93 16 26 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.14 4.15 7.33 -2.91 -0.02 4.13 16 29 H 0.03 1.63 7.51 -2.39 -0.02 1.61 16 30 H 0.04 1.74 7.80 -2.38 -0.02 1.72 16 31 H 0.06 2.79 6.94 -2.38 -0.02 2.78 16 32 H 0.26 13.19 8.31 -92.70 -0.77 12.42 16 Total: -1.00 -64.36 286.77 2.97 -61.39 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.17 Total: 9.59 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.59 Total: -27.51 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -0.61 Total: -101.46 kcal Atomic # 8 Polarization: -90.46 SS G_CDS: -3.93 Total: -94.39 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 16 Polarization: 112.13 SS G_CDS: -0.28 Total: 111.85 kcal Total: -64.36 2.97 -61.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070430468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.303 kcal (2) G-P(sol) polarization free energy of solvation -64.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds