Wall clock time and date at job start Tue Mar 31 2020 01:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00131 * 2 1 4 4 C 1.50700 * 109.47231 * 275.00196 * 3 2 1 5 5 H 1.08001 * 119.99661 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00003 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00144 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99947 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47210 * 59.99556 * 8 6 4 10 10 H 1.48497 * 109.47438 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47192 * 299.99867 * 8 6 4 12 12 S 1.65593 * 119.99945 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40493 * 336.46237 * 12 2 1 14 14 O 1.42098 * 106.40487 * 203.54331 * 12 2 1 15 15 N 1.65610 * 107.21721 * 90.00125 * 12 2 1 16 16 C 1.46386 * 119.52032 * 269.93447 * 15 12 2 17 17 C 1.53240 * 109.48233 * 244.93054 * 16 15 12 18 18 S 1.81738 * 108.90963 * 302.56268 * 17 16 15 19 19 C 1.81742 * 102.30929 * 54.47109 * 18 17 16 20 20 C 1.46372 * 119.64116 * 90.00104 * 15 12 2 21 21 H 1.08996 * 109.47356 * 270.00169 * 1 2 3 22 22 H 1.09004 * 109.46867 * 30.00095 * 1 2 3 23 23 H 1.08997 * 109.47081 * 149.99746 * 1 2 3 24 24 H 1.09002 * 109.47355 * 34.99832 * 3 2 1 25 25 H 1.09003 * 109.47509 * 154.99858 * 3 2 1 26 26 H 0.97001 * 120.00044 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.34885 * 125.00152 * 16 15 12 28 28 H 1.09001 * 109.59156 * 5.00885 * 16 15 12 29 29 H 1.09002 * 109.58540 * 182.69742 * 17 16 15 30 30 H 1.09005 * 109.58026 * 62.42362 * 17 16 15 31 31 H 1.09001 * 109.58412 * 65.25244 * 19 18 17 32 32 H 1.08994 * 109.58072 * 185.52820 * 19 18 17 33 33 H 1.08995 * 109.47588 * 354.90709 * 20 15 12 34 34 H 1.08999 * 109.46598 * 234.91644 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5035 3.6469 -0.6706 8 14 3.1797 3.5660 -3.4209 9 1 1.8335 3.7721 -4.0130 10 1 3.9221 4.8521 -3.4210 11 1 3.9253 2.5635 -4.2237 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4063 0.5455 14 8 3.5759 -1.1566 0.5450 15 7 2.5381 -1.8593 -1.5811 16 6 1.5424 -2.6826 -2.2693 17 6 2.1609 -4.0373 -2.6306 18 16 3.6333 -3.7571 -3.6584 19 6 4.6125 -2.6219 -2.6311 20 6 3.7470 -1.4091 -2.2727 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6502 2.0043 0.5894 25 1 3.1858 1.1177 0.4343 26 1 3.9670 4.4805 -0.8472 27 1 1.2211 -2.1756 -3.1792 28 1 0.6828 -2.8380 -1.6172 29 1 1.4362 -4.6335 -3.1852 30 1 2.4460 -4.5634 -1.7195 31 1 4.9238 -3.1309 -1.7189 32 1 5.4922 -2.2945 -3.1852 33 1 4.3103 -0.7404 -1.6219 34 1 3.4684 -0.8797 -3.1838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075790411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:20 Heat of formation + Delta-G solvation = -92.878000 kcal Electronic energy + Delta-G solvation = -19398.521759 eV Core-core repulsion = 16390.669168 eV Total energy + Delta-G solvation = -3007.852590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.46574 -38.37651 -37.22813 -36.95267 -34.48156 -32.80368 -30.34041 -29.66613 -26.78409 -24.80124 -24.21103 -23.31131 -20.16204 -19.14788 -18.62030 -18.26741 -17.41584 -16.99047 -16.63784 -16.01584 -15.66090 -15.21044 -15.07695 -14.95709 -14.77693 -14.06812 -14.01738 -13.95922 -13.87785 -13.43867 -13.18103 -13.01840 -12.92272 -12.69953 -12.64795 -12.46809 -12.36342 -11.92927 -11.91453 -11.74355 -10.83110 -10.57690 -10.32511 -9.78585 -8.68263 -8.16337 -6.30610 -0.40798 0.78368 1.46160 1.46559 1.51098 1.54298 1.87603 2.42191 2.47919 3.15454 3.29088 3.59218 3.77363 3.98429 4.07261 4.12051 4.30043 4.36338 4.55645 4.63103 4.69924 4.77965 4.85171 4.90657 5.01014 5.04879 5.26157 5.41929 5.54272 5.74866 5.91828 6.09562 6.81712 7.40150 8.91650 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.008251 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.051576 B = 3392.819587 C = 4321.319575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.002 6.002 3 C 0.258 3.742 4 C -0.539 4.539 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.929 5.929 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.291 1.291 11 H -0.262 1.262 12 S 2.795 3.205 13 O -0.999 6.999 14 O -1.011 7.011 15 N -1.002 6.002 16 C 0.113 3.887 17 C -0.092 4.092 18 S -0.271 6.271 19 C -0.093 4.093 20 C 0.125 3.875 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -12.294 -5.962 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.844 5.844 3 C 0.134 3.866 4 C -0.578 4.578 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.569 5.569 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.216 1.216 11 H -0.186 1.186 12 S 2.804 3.196 13 O -0.983 6.983 14 O -0.995 6.995 15 N -0.842 5.842 16 C -0.014 4.014 17 C -0.242 4.242 18 S -0.045 6.045 19 C -0.243 4.243 20 C -0.002 4.002 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.605 -13.044 -6.151 14.865 hybrid contribution 0.006 1.505 0.425 1.564 sum -3.600 -11.539 -5.727 13.375 Atomic orbital electron populations 1.21482 0.77920 1.03512 1.01915 1.57567 1.15728 1.22089 1.88997 1.18788 0.90815 0.80087 0.96927 1.21763 1.35938 1.06777 0.93333 0.90835 1.25801 0.94960 0.96854 1.01101 1.70061 1.37833 1.15723 1.33291 0.85616 0.78580 0.77624 0.79956 1.19315 1.21636 1.18636 1.01380 0.72288 0.72385 0.73526 1.93519 1.67243 1.60096 1.77432 1.93523 1.42631 1.85676 1.77702 1.57776 1.29816 1.64693 1.31895 1.21686 0.90160 0.89667 0.99864 1.23880 0.97718 1.00192 1.02405 1.86671 1.23308 1.61971 1.32542 1.23840 1.00614 0.97466 1.02371 1.21386 0.84401 0.95180 0.99221 0.92655 0.90705 0.90130 0.96317 0.96345 0.92577 0.88412 0.87446 0.83855 0.89885 0.89951 0.85093 0.89778 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.07 10.31 127.77 1.32 4.39 16 2 N -1.00 -39.98 3.23 -543.23 -1.75 -41.73 16 3 C 0.26 12.71 5.41 85.63 0.46 13.18 16 4 C -0.54 -27.05 9.38 25.60 0.24 -26.81 16 5 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 6 C 0.01 0.65 5.46 84.65 0.46 1.11 16 7 N -0.93 -52.83 13.29 21.45 0.28 -52.55 16 8 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 12 S 2.79 106.47 6.01 -56.49 -0.34 106.13 16 13 O -1.00 -37.65 15.79 -128.00 -2.02 -39.67 16 14 O -1.01 -46.30 15.28 -128.00 -1.96 -48.25 16 15 N -1.00 -31.04 3.15 -515.48 -1.63 -32.67 16 16 C 0.11 2.63 6.18 86.48 0.53 3.17 16 17 C -0.09 -1.90 6.66 72.06 0.48 -1.42 16 18 S -0.27 -6.49 22.30 -56.49 -1.26 -7.75 16 19 C -0.09 -2.41 6.67 72.06 0.48 -1.93 16 20 C 0.13 3.91 6.18 86.49 0.53 4.44 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 23 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 24 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 25 H 0.02 1.03 6.91 -2.39 -0.02 1.01 16 26 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.11 2.31 6.96 -2.39 -0.02 2.30 16 29 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.08 3.10 6.97 -2.39 -0.02 3.08 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -64.48 304.07 -1.05 -65.53 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.08 Total: 12.09 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.51 Total: -3.87 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -3.09 Total: -126.95 kcal Atomic # 8 Polarization: -83.95 SS G_CDS: -3.98 Total: -87.92 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 99.98 SS G_CDS: -1.60 Total: 98.38 kcal Total: -64.48 -1.05 -65.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075790411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.347 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds