Wall clock time and date at job start Tue Mar 31 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73605 * 119.99902 * 2 1 4 4 C 1.50700 * 120.00165 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.46925 * 115.00288 * 4 2 1 6 6 C 1.34779 * 120.00171 * 180.02562 * 5 4 2 7 7 O 1.21582 * 119.99757 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00503 * 180.02562 * 6 5 4 9 9 C 1.39238 * 120.00321 * 184.29360 * 8 6 5 10 10 C 1.39482 * 119.83060 * 324.69995 * 9 8 6 11 11 C 1.36373 * 120.16922 * 180.30005 * 10 9 8 12 12 C 1.40873 * 119.82571 * 359.48280 * 11 10 9 13 13 C 1.41157 * 120.16318 * 180.25714 * 12 11 10 14 14 H 1.08003 * 119.99989 * 215.00877 * 13 12 11 15 15 C 1.39895 * 120.00318 * 35.00744 * 13 12 11 16 16 N 1.30880 * 119.99774 * 355.54321 * 15 13 12 17 17 Si 1.86793 * 120.00169 * 175.54652 * 15 13 12 18 18 H 1.48501 * 109.47178 * 60.00081 * 17 15 13 19 19 H 1.48504 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47440 * 300.00075 * 17 15 13 21 21 C 1.40864 * 119.67385 * 0.51426 * 12 11 10 22 22 C 1.36380 * 119.82572 * 359.73510 * 21 12 11 23 23 H 1.08004 * 119.99857 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.00515 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47341 * 355.00104 * 4 2 1 26 26 H 1.09003 * 109.47064 * 235.00060 * 4 2 1 27 27 H 0.96999 * 120.00251 * 0.02562 * 5 4 2 28 28 H 0.97008 * 119.99848 * 4.28650 * 8 6 5 29 29 H 1.07997 * 119.91450 * 0.02562 * 10 9 8 30 30 H 1.07997 * 120.08493 * 179.69701 * 11 10 9 31 31 H 0.96998 * 120.00364 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.08959 * 179.71866 * 21 12 11 33 33 H 1.08005 * 119.91037 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1795 1.5035 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8148 -1.4366 -1.2512 6 6 3.5672 -2.5324 -1.4742 7 8 3.6240 -3.4116 -0.6363 8 7 4.2573 -2.6532 -2.6255 9 6 4.9625 -3.8232 -2.8950 10 6 5.5843 -4.5138 -1.8548 11 6 6.2819 -5.6570 -2.1119 12 6 6.3644 -6.1460 -3.4305 13 6 7.0800 -7.3316 -3.7038 14 1 7.6262 -7.4313 -4.6302 15 6 7.0819 -8.3775 -2.7748 16 7 6.4935 -8.2243 -1.6158 17 14 7.9241 -9.9927 -3.1884 18 1 9.3642 -9.7462 -3.4539 19 1 7.7855 -10.9303 -2.0451 20 1 7.2928 -10.5856 -4.3947 21 6 5.7338 -5.4430 -4.4757 22 6 5.0440 -4.2983 -4.2038 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.3602 -2.1316 0.0905 26 1 2.7572 -1.3246 0.8424 27 1 2.7698 -0.7350 -1.9195 28 1 4.2627 -1.9251 -3.2664 29 1 5.5168 -4.1398 -0.8439 30 1 6.7669 -6.1880 -1.3062 31 1 6.4944 -8.9496 -0.9717 32 1 5.7965 -5.8093 -5.4897 33 1 4.5604 -3.7580 -5.0042 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077186020.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:14 Heat of formation + Delta-G solvation = -13.977348 kcal Electronic energy + Delta-G solvation = -18415.994929 eV Core-core repulsion = 15274.076070 eV Total energy + Delta-G solvation = -3141.918859 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42136 -39.30670 -38.00837 -36.45229 -35.95417 -34.72251 -33.44775 -31.37699 -30.71437 -27.74993 -26.23231 -23.27691 -22.82573 -21.76207 -21.14441 -19.34914 -19.17524 -18.36240 -17.08354 -17.01906 -16.40189 -16.06765 -15.74219 -15.57280 -14.83773 -14.70155 -14.47209 -13.94822 -13.92236 -13.56765 -13.28208 -13.16954 -12.81273 -12.70320 -12.63193 -12.28885 -11.84095 -11.78677 -11.69704 -11.33128 -10.92159 -10.55201 -10.29922 -10.11026 -9.41170 -8.68017 -8.46052 -6.29080 0.72959 0.91026 1.17093 1.22561 1.40265 1.50472 1.53533 1.88227 2.18994 2.26624 2.85838 3.39927 3.48707 3.73267 4.30182 4.46806 4.51632 4.57318 4.71550 5.02119 5.12724 5.14543 5.17581 5.19303 5.36458 5.38899 5.46335 5.72729 5.81742 6.11767 6.17490 6.19801 6.40976 6.74989 6.99739 7.06693 7.12519 7.64423 8.46834 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.044179 B = 0.003077 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.626540 B = 9098.954056 C = 9408.443394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 Cl -0.089 7.089 4 C 0.179 3.821 5 N -0.727 5.727 6 C 0.694 3.306 7 O -0.623 6.623 8 N -0.657 5.657 9 C 0.040 3.960 10 C -0.109 4.109 11 C -0.167 4.167 12 C 0.064 3.936 13 C -0.498 4.498 14 H 0.079 0.921 15 C 0.022 3.978 16 N -0.848 5.848 17 Si 0.990 3.010 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.208 4.208 22 C -0.108 4.108 23 H 0.142 0.858 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.411 0.589 28 H 0.415 0.585 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.281 0.719 32 H 0.113 0.887 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 16.196 0.283 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.137 4.137 3 Cl -0.061 7.061 4 C 0.055 3.945 5 N -0.384 5.384 6 C 0.394 3.606 7 O -0.503 6.503 8 N -0.305 5.305 9 C -0.054 4.054 10 C -0.129 4.129 11 C -0.187 4.187 12 C 0.062 3.938 13 C -0.529 4.529 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.476 5.476 17 Si 0.811 3.189 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.228 4.228 22 C -0.128 4.128 23 H 0.160 0.840 24 H 0.152 0.848 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.247 0.753 28 H 0.253 0.747 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.932 15.450 1.277 18.969 hybrid contribution 0.469 -0.102 -0.269 0.550 sum -10.464 15.347 1.008 18.602 Atomic orbital electron populations 1.24500 0.92832 1.05715 0.92835 1.23146 0.94328 0.86512 1.09671 1.98391 1.78446 1.32159 1.97127 1.20234 0.94779 0.93388 0.86076 1.44853 1.50501 1.21159 1.21912 1.16156 0.79094 0.82684 0.82636 1.90929 1.69549 1.42965 1.46864 1.41842 1.50529 1.17546 1.20616 1.17123 1.03086 0.91500 0.93721 1.20677 0.97646 0.96863 0.97758 1.21158 1.03441 0.95856 0.98232 1.18047 0.91479 0.92406 0.91864 1.19732 1.29318 0.99595 1.04274 0.90249 1.26837 0.94167 1.04321 0.93597 1.69915 1.36421 1.34433 1.06850 0.85131 0.79200 0.75892 0.78664 1.18222 1.19870 1.18365 1.20949 1.04296 0.98854 0.98715 1.20405 1.01246 0.96712 0.94478 0.84028 0.84790 0.89410 0.91526 0.75253 0.74736 0.88553 0.87881 0.90829 0.86878 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 14.04 67.63 0.95 -0.23 16 2 C -0.11 -1.63 5.87 25.49 0.15 -1.48 16 3 Cl -0.09 -1.46 28.99 -2.72 -0.08 -1.54 16 4 C 0.18 3.77 5.99 85.63 0.51 4.29 16 5 N -0.73 -17.24 5.55 -482.30 -2.68 -19.92 16 6 C 0.69 24.31 8.40 179.06 1.50 25.81 16 7 O -0.62 -28.66 13.76 -3.97 -0.05 -28.72 16 8 N -0.66 -22.09 5.31 -316.80 -1.68 -23.77 16 9 C 0.04 1.75 6.31 38.56 0.24 1.99 16 10 C -0.11 -5.70 8.61 22.13 0.19 -5.51 16 11 C -0.17 -9.53 8.61 22.48 0.19 -9.33 16 12 C 0.06 3.59 5.55 -21.27 -0.12 3.47 16 13 C -0.50 -27.64 9.02 23.39 0.21 -27.42 16 14 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 15 C 0.02 1.16 5.42 85.24 0.46 1.63 16 16 N -0.85 -47.92 10.61 21.82 0.23 -47.69 16 17 Si 0.99 40.26 29.56 68.60 2.03 42.28 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 C -0.21 -10.00 9.74 22.48 0.22 -9.78 16 22 C -0.11 -4.51 9.90 22.13 0.22 -4.29 16 23 H 0.14 1.04 7.84 -2.91 -0.02 1.01 16 24 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 25 H 0.09 1.87 7.80 -2.39 -0.02 1.85 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.41 7.18 8.48 -92.71 -0.79 6.39 16 28 H 0.42 9.98 8.83 -92.70 -0.82 9.16 16 29 H 0.10 5.21 6.22 -2.91 -0.02 5.19 16 30 H 0.10 6.33 6.15 -2.91 -0.02 6.31 16 31 H 0.28 14.63 8.30 -92.71 -0.77 13.86 16 32 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -71.39 306.34 2.06 -69.34 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.44 Total: 30.88 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.74 Total: -20.87 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -4.13 Total: -91.38 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -71.39 2.06 -69.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077186020.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.358 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds