Wall clock time and date at job start Tue Mar 31 2020 01:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34069 * 125.80154 * 2 1 4 4 C 1.34165 * 110.79652 * 179.69333 * 3 2 1 5 5 C 1.34296 * 109.07035 * 0.44843 * 4 3 2 6 6 C 1.36097 * 125.79314 * 179.97438 * 2 1 3 7 7 C 1.47803 * 127.14862 * 0.03978 * 6 2 1 8 8 N 1.31075 * 126.30489 * 359.71531 * 7 6 2 9 9 N 1.28649 * 109.41939 * 179.82797 * 8 7 6 10 10 C 1.31153 * 109.46762 * 0.43867 * 9 8 7 11 11 S 1.76203 * 126.28392 * 179.73409 * 10 9 8 12 12 C 1.81004 * 99.99904 * 0.02562 * 11 10 9 13 13 C 1.52995 * 109.47293 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47420 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00247 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00359 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99998 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46951 * 90.00010 * 18 16 14 20 20 H 1.48498 * 109.47005 * 210.00553 * 18 16 14 21 21 H 1.48498 * 109.46974 * 330.00285 * 18 16 14 22 22 O 1.34744 * 107.43364 * 359.73434 * 10 9 8 23 23 H 1.09007 * 109.47803 * 270.04225 * 1 2 3 24 24 H 1.08997 * 109.47248 * 30.04651 * 1 2 3 25 25 H 1.09007 * 109.47769 * 150.04128 * 1 2 3 26 26 H 1.08005 * 125.46418 * 180.31074 * 4 3 2 27 27 H 1.08002 * 126.99459 * 179.84053 * 5 4 3 28 28 H 1.09000 * 109.47286 * 300.00203 * 12 11 10 29 29 H 1.08997 * 109.46768 * 59.99694 * 12 11 10 30 30 H 1.09000 * 109.46993 * 300.00227 * 13 12 11 31 31 H 1.08998 * 109.47150 * 59.99739 * 13 12 11 32 32 H 0.96995 * 120.00008 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2912 1.0874 0.0000 4 6 3.5871 0.7400 0.0067 5 6 3.6823 -0.5996 0.0014 6 6 2.3029 -1.1039 0.0005 7 6 1.8693 -2.5169 0.0003 8 7 0.6318 -2.9490 0.0049 9 7 0.6280 -4.2355 -0.0006 10 6 1.8632 -4.6763 0.0006 11 16 2.3678 -6.3645 0.0013 12 6 0.7499 -7.1762 -0.0008 13 6 0.9408 -8.6942 0.0001 14 6 -0.4061 -9.3699 -0.0024 15 1 -1.3082 -8.7760 -0.0039 16 6 -0.4869 -10.7463 -0.0015 17 7 -1.6624 -11.3361 -0.0041 18 14 1.0734 -11.7735 0.0020 19 1 1.4843 -12.0447 1.4029 20 1 0.8213 -13.0589 -0.6977 21 1 2.1547 -11.0335 -0.6966 22 8 2.6755 -3.6013 0.0012 23 1 -0.3635 0.0008 1.0277 24 1 -0.3633 0.8895 -0.5145 25 1 -0.3635 -0.8904 -0.5132 26 1 4.4201 1.4275 0.0129 27 1 4.5889 -1.1866 0.0022 28 1 0.1935 -6.8798 0.8884 29 1 0.1960 -6.8798 -0.8915 30 1 1.4974 -8.9909 -0.8889 31 1 1.4947 -8.9902 0.8910 32 1 -1.7192 -12.3044 -0.0031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079438498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:59 Heat of formation + Delta-G solvation = 49.151726 kcal Electronic energy + Delta-G solvation = -18094.154755 eV Core-core repulsion = 14957.017085 eV Total energy + Delta-G solvation = -3137.137670 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.94935 -42.84570 -36.12808 -34.29586 -33.88039 -32.27660 -31.42703 -30.67168 -27.24143 -25.78585 -24.43966 -23.76614 -21.87919 -20.97575 -20.48560 -18.36309 -17.70650 -17.40745 -17.05008 -16.53625 -16.05469 -15.43099 -14.56834 -14.16670 -14.01997 -13.75256 -13.40242 -13.26274 -13.23410 -12.84313 -12.42105 -12.33218 -11.98268 -11.71217 -11.49504 -11.29980 -11.13885 -10.54391 -10.47540 -10.25950 -9.81587 -9.77865 -9.37487 -8.90627 -8.67108 -7.61969 -6.16474 -4.18182 0.57857 0.74547 1.45588 1.93769 2.28556 2.40968 2.69230 2.79841 3.23966 3.32108 3.33561 3.88796 4.25643 4.33840 4.51432 4.83019 4.98673 5.13025 5.15798 5.19740 5.23657 5.32640 5.49301 5.51354 5.72013 5.80461 5.86711 5.92176 6.35205 6.63438 6.89764 7.01540 7.53808 8.21231 8.35720 8.86197 9.41976 10.95952 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.048054 B = 0.003069 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.534648 B = 9121.291695 C = 9678.075941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.074 3.926 3 O -0.172 6.172 4 C -0.033 4.033 5 C -0.184 4.184 6 C -0.132 4.132 7 C 0.231 3.769 8 N -0.271 5.271 9 N -0.284 5.284 10 C 0.148 3.852 11 S 0.029 5.971 12 C -0.081 4.081 13 C 0.002 3.998 14 C -0.521 4.521 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.264 1.264 22 O -0.206 6.206 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.213 0.787 27 H 0.160 0.840 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.030 0.970 31 H 0.025 0.975 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.151 23.246 -0.011 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.020 3.980 3 O -0.068 6.068 4 C -0.098 4.098 5 C -0.204 4.204 6 C -0.135 4.135 7 C 0.019 3.981 8 N -0.119 5.119 9 N -0.136 5.136 10 C -0.168 4.168 11 S 0.261 5.739 12 C -0.229 4.229 13 C -0.038 4.038 14 C -0.561 4.561 15 H 0.097 0.903 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.188 1.188 22 O -0.087 6.087 23 H 0.111 0.889 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.229 0.771 27 H 0.178 0.822 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.761 22.841 -0.013 25.250 hybrid contribution 1.123 -0.293 0.036 1.161 sum 11.884 22.549 0.023 25.489 Atomic orbital electron populations 1.20652 0.83278 1.05433 1.04796 1.22643 0.94138 0.82500 0.98759 1.83911 1.17079 1.34114 1.71657 1.23890 0.83713 0.95997 1.06234 1.22805 0.96215 0.94460 1.06898 1.18050 0.93857 0.85411 1.16193 1.24193 0.84505 0.87859 1.01544 1.74415 1.17269 1.03131 1.17095 1.74942 1.17056 1.02082 1.19488 1.30256 0.87535 0.96431 1.02568 1.86073 1.16673 0.81241 1.89901 1.24032 0.91369 1.00249 1.07217 1.19451 0.99539 0.86946 0.97848 1.20850 0.91045 0.91777 1.52423 0.90311 1.24950 0.96121 0.97716 0.94169 1.69884 1.23423 1.10066 1.49860 0.86816 0.83991 0.80017 0.78795 1.19970 1.21039 1.18839 1.85017 1.38569 1.13954 1.71183 0.88910 0.89886 0.87260 0.77100 0.82214 0.88528 0.88502 0.95213 0.95652 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.01 36.00 0.36 -0.36 16 2 C 0.07 0.77 7.37 -35.08 -0.26 0.51 16 3 O -0.17 -1.56 10.55 6.71 0.07 -1.49 16 4 C -0.03 -0.24 12.04 29.34 0.35 0.12 16 5 C -0.18 -1.75 11.15 -37.48 -0.42 -2.16 16 6 C -0.13 -1.63 6.32 -103.26 -0.65 -2.28 16 7 C 0.23 3.58 8.25 -13.96 -0.12 3.46 16 8 N -0.27 -4.61 10.41 32.09 0.33 -4.27 16 9 N -0.28 -5.32 11.61 30.31 0.35 -4.96 16 10 C 0.15 2.60 8.53 52.47 0.45 3.05 16 11 S 0.03 0.49 22.31 -107.50 -2.40 -1.91 16 12 C -0.08 -1.57 5.16 37.15 0.19 -1.38 16 13 C 0.00 0.05 4.04 -27.89 -0.11 -0.06 16 14 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 15 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 18 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 22 O -0.21 -3.38 10.92 2.19 0.02 -3.36 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.11 1.11 6.63 -51.92 -0.34 0.76 16 26 H 0.21 0.59 8.06 -52.48 -0.42 0.16 16 27 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.10 1.91 8.14 -51.92 -0.42 1.48 16 29 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 31 H 0.03 0.56 7.57 -51.93 -0.39 0.16 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -31.52 302.36 -4.83 -36.34 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.23 Total: -3.27 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.63 Total: -11.73 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 1.46 Total: -35.23 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.09 Total: -4.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.40 Total: -1.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.52 -4.83 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079438498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.494 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds