Wall clock time and date at job start Tue Mar 31 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34069 * 125.80154 * 2 1 4 4 C 1.34165 * 110.79652 * 179.69333 * 3 2 1 5 5 C 1.34296 * 109.07035 * 0.44843 * 4 3 2 6 6 C 1.36097 * 125.79314 * 179.97438 * 2 1 3 7 7 C 1.47803 * 127.14862 * 0.03978 * 6 2 1 8 8 N 1.31075 * 126.30489 * 359.71531 * 7 6 2 9 9 N 1.28649 * 109.41939 * 179.82797 * 8 7 6 10 10 C 1.31153 * 109.46762 * 0.43867 * 9 8 7 11 11 S 1.76203 * 126.28392 * 179.73409 * 10 9 8 12 12 C 1.81004 * 99.99904 * 0.02562 * 11 10 9 13 13 C 1.52995 * 109.47293 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47420 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00247 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00359 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99998 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46951 * 90.00010 * 18 16 14 20 20 H 1.48498 * 109.47005 * 210.00553 * 18 16 14 21 21 H 1.48498 * 109.46974 * 330.00285 * 18 16 14 22 22 O 1.34744 * 107.43364 * 359.73434 * 10 9 8 23 23 H 1.09007 * 109.47803 * 270.04225 * 1 2 3 24 24 H 1.08997 * 109.47248 * 30.04651 * 1 2 3 25 25 H 1.09007 * 109.47769 * 150.04128 * 1 2 3 26 26 H 1.08005 * 125.46418 * 180.31074 * 4 3 2 27 27 H 1.08002 * 126.99459 * 179.84053 * 5 4 3 28 28 H 1.09000 * 109.47286 * 300.00203 * 12 11 10 29 29 H 1.08997 * 109.46768 * 59.99694 * 12 11 10 30 30 H 1.09000 * 109.46993 * 300.00227 * 13 12 11 31 31 H 1.08998 * 109.47150 * 59.99739 * 13 12 11 32 32 H 0.96995 * 120.00008 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2912 1.0874 0.0000 4 6 3.5871 0.7400 0.0067 5 6 3.6823 -0.5996 0.0014 6 6 2.3029 -1.1039 0.0005 7 6 1.8693 -2.5169 0.0003 8 7 0.6318 -2.9490 0.0049 9 7 0.6280 -4.2355 -0.0006 10 6 1.8632 -4.6763 0.0006 11 16 2.3678 -6.3645 0.0013 12 6 0.7499 -7.1762 -0.0008 13 6 0.9408 -8.6942 0.0001 14 6 -0.4061 -9.3699 -0.0024 15 1 -1.3082 -8.7760 -0.0039 16 6 -0.4869 -10.7463 -0.0015 17 7 -1.6624 -11.3361 -0.0041 18 14 1.0734 -11.7735 0.0020 19 1 1.4843 -12.0447 1.4029 20 1 0.8213 -13.0589 -0.6977 21 1 2.1547 -11.0335 -0.6966 22 8 2.6755 -3.6013 0.0012 23 1 -0.3635 0.0008 1.0277 24 1 -0.3633 0.8895 -0.5145 25 1 -0.3635 -0.8904 -0.5132 26 1 4.4201 1.4275 0.0129 27 1 4.5889 -1.1866 0.0022 28 1 0.1935 -6.8798 0.8884 29 1 0.1960 -6.8798 -0.8915 30 1 1.4974 -8.9909 -0.8889 31 1 1.4947 -8.9902 0.8910 32 1 -1.7192 -12.3044 -0.0031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079438498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:58 Heat of formation + Delta-G solvation = 25.951803 kcal Electronic energy + Delta-G solvation = -18095.160779 eV Core-core repulsion = 14957.017085 eV Total energy + Delta-G solvation = -3138.143695 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.22712 -43.58739 -37.43119 -35.82899 -35.18399 -33.39521 -32.96385 -31.84670 -28.12743 -27.57858 -25.64189 -25.01259 -22.93848 -22.58743 -21.36893 -19.54032 -19.14651 -18.68200 -18.58201 -17.31049 -17.28588 -16.45812 -16.26561 -15.83380 -15.42504 -14.80902 -14.73898 -14.18671 -13.93270 -13.87789 -13.80408 -13.72483 -13.27115 -13.17681 -12.89433 -12.57319 -12.47999 -12.19628 -12.13300 -11.93414 -11.70597 -11.32647 -10.79786 -10.73207 -9.71837 -8.91113 -8.31161 -6.38785 -0.61219 -0.54689 0.55475 0.83707 0.97055 1.39042 1.39780 1.41281 1.52329 1.64086 1.87273 2.35693 2.90504 3.03670 3.52184 3.55497 3.69879 3.98915 4.07107 4.11358 4.20410 4.34466 4.53726 4.59864 4.65404 4.72030 4.79125 5.11791 5.17194 5.21775 5.25254 5.51240 5.91255 6.19843 6.68072 6.91988 7.25338 8.85044 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.048054 B = 0.003069 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.534648 B = 9121.291695 C = 9678.075941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.084 3.916 3 O -0.170 6.170 4 C -0.007 4.007 5 C -0.205 4.205 6 C -0.174 4.174 7 C 0.246 3.754 8 N -0.294 5.294 9 N -0.310 5.310 10 C 0.133 3.867 11 S 0.084 5.916 12 C -0.083 4.083 13 C 0.006 3.994 14 C -0.533 4.533 15 H 0.037 0.963 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.240 1.240 22 O -0.207 6.207 23 H 0.102 0.898 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.260 0.740 27 H 0.171 0.829 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.206 25.150 0.027 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 O -0.065 6.065 4 C -0.072 4.072 5 C -0.225 4.225 6 C -0.177 4.177 7 C 0.035 3.965 8 N -0.141 5.141 9 N -0.161 5.161 10 C -0.184 4.184 11 S 0.315 5.685 12 C -0.232 4.232 13 C -0.033 4.033 14 C -0.572 4.572 15 H 0.055 0.945 16 C -0.187 4.187 17 N -0.586 5.586 18 Si 0.770 3.230 19 H -0.188 1.188 20 H -0.209 1.209 21 H -0.163 1.163 22 O -0.089 6.089 23 H 0.120 0.880 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.276 0.724 27 H 0.188 0.812 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.812 24.783 0.026 28.372 hybrid contribution 0.149 -0.617 0.023 0.635 sum 13.962 24.165 0.049 27.909 Atomic orbital electron populations 1.20711 0.82396 1.05750 1.05455 1.22907 0.94841 0.82370 0.97006 1.83962 1.17951 1.33412 1.71196 1.24782 0.83684 0.95951 1.02799 1.23036 0.95318 0.95618 1.08493 1.18396 0.96093 0.84141 1.19090 1.24837 0.83974 0.88804 0.98900 1.74382 1.18174 1.02437 1.19120 1.74876 1.17975 1.03185 1.20092 1.30298 0.87574 0.97044 1.03511 1.85671 1.12585 0.80200 1.90055 1.23685 0.93822 0.99201 1.06473 1.19291 0.96887 0.88466 0.98690 1.21160 0.92166 0.92088 1.51819 0.94510 1.25961 0.99894 0.99208 0.93665 1.70046 1.26294 1.10588 1.51667 0.85692 0.79741 0.77989 0.79543 1.18808 1.20930 1.16280 1.85007 1.38499 1.13959 1.71437 0.87995 0.87248 0.89216 0.72385 0.81156 0.89424 0.89425 0.94160 0.94292 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.01 71.23 0.71 -0.66 16 2 C 0.08 1.60 7.37 25.18 0.19 1.79 16 3 O -0.17 -2.56 10.55 1.09 0.01 -2.55 16 4 C -0.01 -0.08 12.04 66.92 0.81 0.73 16 5 C -0.20 -3.41 11.15 23.63 0.26 -3.15 16 6 C -0.17 -4.10 6.32 -18.98 -0.12 -4.22 16 7 C 0.25 7.60 8.25 87.34 0.72 8.32 16 8 N -0.29 -10.19 10.41 -166.14 -1.73 -11.92 16 9 N -0.31 -11.84 11.61 -171.94 -2.00 -13.83 16 10 C 0.13 4.64 8.53 130.34 1.11 5.75 16 11 S 0.08 2.71 22.31 -56.49 -1.26 1.45 16 12 C -0.08 -3.27 5.16 71.98 0.37 -2.90 16 13 C 0.01 0.29 4.04 29.84 0.12 0.41 16 14 C -0.53 -29.90 9.66 25.60 0.25 -29.65 16 15 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 16 C 0.01 0.61 5.47 84.65 0.46 1.08 16 17 N -0.95 -58.34 13.96 21.45 0.30 -58.05 16 18 Si 0.95 42.19 27.47 68.60 1.88 44.08 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 22 O -0.21 -6.72 10.92 -15.06 -0.16 -6.89 16 23 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 1.83 6.63 -2.38 -0.02 1.81 16 26 H 0.26 0.01 8.06 -2.91 -0.02 -0.01 16 27 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.09 3.56 8.14 -2.40 -0.02 3.54 16 29 H 0.09 3.56 8.14 -2.40 -0.02 3.55 16 30 H 0.04 1.71 7.20 -2.39 -0.02 1.70 16 31 H 0.04 1.64 7.57 -2.39 -0.02 1.62 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.60 302.36 3.02 -67.58 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.10 Total: 2.64 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 4.88 Total: -22.51 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.43 Total: -83.79 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.15 Total: -9.44 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.26 Total: 1.45 kcal Total: -70.60 3.02 -67.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079438498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -70.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds