Wall clock time and date at job start Tue Mar 31 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46882 * 110.16260 * 3 2 1 5 5 C 1.37096 * 120.00002 * 264.20061 * 4 3 2 6 6 H 1.07996 * 120.00372 * 198.12158 * 5 4 3 7 7 C 1.38960 * 119.99899 * 18.11913 * 5 4 3 8 8 N 1.31407 * 119.99777 * 18.72774 * 7 5 4 9 9 Si 1.86795 * 120.00145 * 198.72872 * 7 5 4 10 10 H 1.48503 * 109.46887 * 85.58760 * 9 7 5 11 11 H 1.48494 * 109.47261 * 205.58869 * 9 7 5 12 12 H 1.48501 * 109.47221 * 325.58702 * 9 7 5 13 13 C 1.34771 * 120.00447 * 84.20810 * 4 3 2 14 14 O 1.21295 * 120.00508 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99918 * 359.97438 * 13 4 3 16 16 C 1.50704 * 109.47228 * 180.02562 * 15 13 4 17 17 C 1.38204 * 120.00031 * 264.72137 * 16 15 13 18 18 C 1.38428 * 119.99766 * 179.76696 * 17 16 15 19 19 F 1.35096 * 120.00161 * 180.27836 * 18 17 16 20 20 C 1.38472 * 119.99957 * 0.54014 * 18 17 16 21 21 C 1.38164 * 119.99973 * 359.71375 * 20 18 17 22 22 C 1.38422 * 119.99397 * 85.00327 * 16 15 13 23 23 F 1.35100 * 120.00725 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47088 * 350.15982 * 3 2 1 25 25 H 1.09005 * 109.46482 * 230.16063 * 3 2 1 26 26 H 0.96998 * 120.00260 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47507 * 300.00825 * 15 13 4 28 28 H 1.09001 * 109.46948 * 60.00539 * 15 13 4 29 29 H 1.07998 * 120.00379 * 0.03289 * 17 16 15 30 30 H 1.08005 * 120.00197 * 179.70318 * 20 18 17 31 31 H 1.07998 * 120.00230 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0961 0.4769 -1.2965 5 6 3.4381 -0.4227 -2.2728 6 1 4.0596 -0.1122 -3.0997 7 6 2.9851 -1.7343 -2.1985 8 7 1.9592 -2.0327 -1.4334 9 14 3.8344 -3.0732 -3.1861 10 1 4.9944 -3.5938 -2.4189 11 1 2.8774 -4.1783 -3.4471 12 1 4.3065 -2.5119 -4.4773 13 6 3.2091 1.7995 -1.5296 14 8 3.6136 2.1939 -2.6030 15 6 2.8328 2.7886 -0.4566 16 6 3.0492 4.1900 -0.9670 17 6 4.2315 4.8507 -0.6921 18 6 4.4321 6.1362 -1.1649 19 9 5.5901 6.7800 -0.9010 20 6 3.4437 6.7642 -1.9039 21 6 2.2596 6.1056 -2.1743 22 6 2.0612 4.8175 -1.7061 23 9 0.9034 4.1736 -1.9705 24 1 2.9719 -1.0117 0.1756 25 1 2.9710 0.6592 0.7892 26 1 1.6427 -2.9481 -1.3818 27 1 1.7837 2.6564 -0.1923 28 1 3.4531 2.6226 0.4242 29 1 5.0006 4.3626 -0.1120 30 1 3.5982 7.7689 -2.2688 31 1 1.4885 6.5955 -2.7503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079860384.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:25 Heat of formation + Delta-G solvation = -78.622007 kcal Electronic energy + Delta-G solvation = -21222.073902 eV Core-core repulsion = 17525.555161 eV Total energy + Delta-G solvation = -3696.518742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95660 -49.89207 -40.88193 -39.55692 -37.57392 -36.18362 -34.14887 -33.49597 -31.13989 -29.43930 -28.80662 -26.39168 -24.02806 -23.18831 -20.93994 -19.76762 -18.60913 -18.34549 -18.23237 -18.11791 -17.86132 -16.86485 -16.44286 -16.27501 -15.97364 -15.62962 -15.34236 -15.24598 -14.74328 -14.59111 -14.29344 -14.12224 -13.74016 -13.66840 -13.40406 -13.17599 -12.97531 -12.79730 -12.72254 -12.32743 -12.18946 -12.10693 -11.93007 -11.11867 -10.58331 -10.04462 -9.93213 -9.50200 -8.39601 -5.97882 -0.04290 0.07250 1.40048 1.48085 1.57571 1.80218 2.05037 2.26240 2.31110 2.40245 3.00679 3.10225 3.22149 3.26611 3.50896 3.60302 3.68839 4.02293 4.05549 4.16690 4.37641 4.50565 4.60228 4.80314 4.94238 4.96707 5.02334 5.07511 5.17891 5.48145 5.81255 6.02787 6.39191 7.01396 7.11358 7.34035 7.90014 8.63444 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.005140 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.282860 B = 5445.986910 C = 5969.872830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.455 5.455 5 C -0.338 4.338 6 H 0.082 0.918 7 C 0.005 3.995 8 N -0.895 5.895 9 Si 0.988 3.012 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.455 3.545 14 O -0.610 6.610 15 C -0.096 4.096 16 C -0.074 4.074 17 C -0.116 4.116 18 C 0.082 3.918 19 F -0.137 7.137 20 C -0.120 4.120 21 C -0.123 4.123 22 C 0.071 3.929 23 F -0.152 7.152 24 H 0.128 0.872 25 H 0.143 0.857 26 H 0.274 0.726 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 12.411 6.217 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.093 3.907 4 N -0.174 5.174 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.813 3.187 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.245 3.755 14 O -0.495 6.495 15 C -0.135 4.135 16 C -0.076 4.076 17 C -0.135 4.135 18 C 0.062 3.938 19 F -0.116 7.116 20 C -0.138 4.138 21 C -0.141 4.141 22 C 0.051 3.949 23 F -0.131 7.131 24 H 0.146 0.854 25 H 0.160 0.840 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.164 0.836 29 H 0.181 0.819 30 H 0.194 0.806 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.801 12.409 5.739 14.190 hybrid contribution 0.260 -1.180 -0.856 1.481 sum 4.060 11.228 4.883 12.900 Atomic orbital electron populations 1.80911 1.14901 1.12814 1.10506 1.29842 0.95911 0.89563 0.90719 1.19176 0.79945 1.05120 0.86480 1.43780 1.56657 1.04331 1.12682 1.19623 1.30452 0.90305 1.06158 0.90031 1.25891 0.95118 1.00047 0.98669 1.69906 1.21631 1.21045 1.40849 0.85012 0.78254 0.77093 0.78384 1.18178 1.21210 1.20568 1.20718 0.82588 0.83112 0.89119 1.90537 1.51612 1.78897 1.28468 1.20653 1.04642 0.89154 0.99071 1.19338 0.93867 0.95549 0.98811 1.21031 0.97106 0.93559 1.01779 1.17705 0.83443 0.91746 1.00879 1.91501 1.46474 1.81158 1.92427 1.21250 0.91567 1.02372 0.98639 1.21206 0.99644 0.92264 1.00994 1.18036 0.83123 0.92849 1.00856 1.91474 1.47124 1.82098 1.92367 0.85427 0.83971 0.91554 0.88864 0.83567 0.81950 0.80599 0.81501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.06 18.54 20.01 0.37 -23.69 16 2 C 0.26 10.98 12.95 89.44 1.16 12.14 16 3 C 0.22 8.03 4.91 84.57 0.42 8.44 16 4 N -0.45 -20.56 2.60 -645.42 -1.68 -22.24 16 5 C -0.34 -17.38 9.34 84.04 0.78 -16.60 16 6 H 0.08 4.56 7.37 -2.91 -0.02 4.53 16 7 C 0.00 0.22 4.94 84.93 0.42 0.64 16 8 N -0.90 -44.29 9.33 21.67 0.20 -44.08 16 9 Si 0.99 39.93 29.59 68.60 2.03 41.96 16 10 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 11 H -0.29 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.45 19.99 7.56 87.66 0.66 20.65 16 14 O -0.61 -32.07 15.69 -3.08 -0.05 -32.12 16 15 C -0.10 -3.05 4.21 29.10 0.12 -2.92 16 16 C -0.07 -2.31 4.38 -19.83 -0.09 -2.39 16 17 C -0.12 -3.02 9.66 22.31 0.22 -2.80 16 18 C 0.08 1.95 7.30 22.37 0.16 2.12 16 19 F -0.14 -3.19 17.27 44.97 0.78 -2.42 16 20 C -0.12 -2.49 10.02 22.31 0.22 -2.27 16 21 C -0.12 -2.96 10.02 22.31 0.22 -2.74 16 22 C 0.07 2.27 7.24 22.37 0.16 2.43 16 23 F -0.15 -5.73 16.56 44.97 0.74 -4.99 16 24 H 0.13 4.83 6.40 -2.39 -0.02 4.81 16 25 H 0.14 3.45 6.68 -2.38 -0.02 3.43 16 26 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 27 H 0.09 3.05 7.16 -2.39 -0.02 3.03 16 28 H 0.15 3.19 7.32 -2.39 -0.02 3.18 16 29 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -69.56 290.84 8.05 -61.51 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.19 Total: 9.37 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 4.46 Total: 16.70 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -1.11 Total: -90.01 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 1.52 Total: -7.41 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.56 8.05 -61.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860384.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.116 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds