Wall clock time and date at job start Tue Mar 31 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35987 * 116.99634 * 2 1 4 4 C 1.37849 * 119.86387 * 0.29251 * 3 2 1 5 5 C 1.40046 * 119.97606 * 180.25302 * 4 3 2 6 6 C 1.47266 * 120.11774 * 179.72965 * 5 4 3 7 7 O 1.21905 * 120.00015 * 179.45330 * 6 5 4 8 8 C 1.41597 * 119.99872 * 359.72652 * 6 5 4 9 9 H 1.07999 * 120.00056 * 359.97438 * 8 6 5 10 10 C 1.40345 * 120.00119 * 179.97438 * 8 6 5 11 11 N 1.30529 * 119.99937 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 120.00148 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47088 * 89.99961 * 12 10 8 14 14 H 1.48495 * 109.47293 * 210.00163 * 12 10 8 15 15 H 1.48502 * 109.47297 * 329.99947 * 12 10 8 16 16 C 1.40628 * 119.76619 * 359.46088 * 5 4 3 17 17 O 1.35765 * 120.06455 * 180.29447 * 16 5 4 18 18 C 1.42896 * 117.00496 * 89.99450 * 17 16 5 19 19 C 1.38714 * 119.86920 * 0.26335 * 16 5 4 20 20 C 1.39194 * 120.01263 * 0.02562 * 19 16 5 21 21 O 1.36366 * 108.64610 * 180.02562 * 20 19 16 22 22 C 1.43962 * 105.54135 * 342.66260 * 21 20 19 23 23 O 1.36651 * 131.34800 * 179.97438 * 19 16 5 24 24 H 1.09002 * 109.47219 * 300.00141 * 1 2 3 25 25 H 1.09000 * 109.47503 * 59.99620 * 1 2 3 26 26 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.01184 * 359.97438 * 4 3 2 28 28 H 0.97000 * 120.00338 * 180.02562 * 11 10 8 29 29 H 1.09006 * 109.46741 * 60.00050 * 18 17 16 30 30 H 1.08999 * 109.47448 * 179.97438 * 18 17 16 31 31 H 1.08994 * 109.47251 * 300.00315 * 18 17 16 32 32 H 1.09004 * 110.57614 * 268.62815 * 22 21 20 33 33 H 1.08998 * 110.70025 * 145.81571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2927 2.3659 0.0061 5 6 1.9259 3.6151 0.0008 6 6 1.1239 4.8501 0.0012 7 8 1.6773 5.9363 0.0067 8 6 -0.2902 4.7760 0.0013 9 1 -0.7805 3.8137 0.0005 10 6 -1.0546 5.9530 0.0023 11 7 -0.4620 7.1161 0.0027 12 14 -2.9200 5.8553 0.0030 13 1 -3.4137 5.8286 1.4033 14 1 -3.4781 7.0405 -0.6961 15 1 -3.3512 4.6189 -0.6975 16 6 3.3304 3.6858 0.0007 17 8 3.9506 4.8935 0.0015 18 6 4.2470 5.4698 1.2751 19 6 4.0809 2.5192 0.0003 20 6 3.4439 1.2816 -0.0005 21 8 4.3932 0.3026 -0.0001 22 6 5.6125 0.9475 -0.4124 23 8 5.4320 2.3150 -0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.2143 2.3070 0.0105 28 1 -0.9903 7.9296 0.0037 29 1 4.9050 4.8022 1.8316 30 1 4.7410 6.4309 1.1330 31 1 3.3216 5.6154 1.8323 32 1 5.7312 0.8865 -1.4942 33 1 6.4717 0.5052 0.0917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085341713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:59 Heat of formation + Delta-G solvation = -137.082797 kcal Electronic energy + Delta-G solvation = -22330.421939 eV Core-core repulsion = 18710.162911 eV Total energy + Delta-G solvation = -3620.259027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81455 -39.25892 -38.34549 -36.41164 -35.72236 -34.95871 -32.74035 -30.12372 -28.99325 -27.13481 -27.00755 -25.82824 -25.39720 -23.17266 -21.77178 -20.19194 -18.13726 -18.06466 -17.27726 -16.74500 -16.28712 -16.09889 -15.49207 -15.34381 -15.06671 -14.64627 -14.07248 -13.95580 -13.75040 -13.30902 -12.70027 -12.62015 -12.46570 -12.35100 -12.32513 -11.87881 -11.43495 -11.22325 -11.15280 -11.10925 -10.93551 -10.46755 -10.33612 -9.78837 -9.28058 -9.02319 -7.77821 -7.54183 -7.46798 -6.39941 -5.01107 1.36587 1.58313 2.95774 3.01630 3.06643 3.08965 3.40885 3.66792 3.70567 3.92216 4.31839 4.58098 4.88948 5.02639 5.18632 5.23358 5.38427 5.50296 5.52082 5.65459 5.67206 5.69754 5.85703 5.95401 6.13531 6.17564 6.42812 6.59269 6.77682 6.87360 7.12003 7.17321 7.61338 7.88839 8.24966 8.67463 8.69565 10.21069 10.42472 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.006786 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.999789 B = 4124.946248 C = 5521.013008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.130 3.870 4 C -0.162 4.162 5 C -0.070 4.070 6 C 0.387 3.613 7 O -0.514 6.514 8 C -0.512 4.512 9 H 0.073 0.927 10 C 0.079 3.921 11 N -0.729 5.729 12 Si 0.907 3.093 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.261 1.261 16 C 0.107 3.893 17 O -0.304 6.304 18 C 0.053 3.947 19 C 0.034 3.966 20 C -0.006 4.006 21 O -0.304 6.304 22 C 0.211 3.789 23 O -0.303 6.303 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.276 0.724 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -10.406 0.804 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.085 3.915 4 C -0.181 4.181 5 C -0.072 4.072 6 C 0.281 3.719 7 O -0.401 6.401 8 C -0.542 4.542 9 H 0.091 0.909 10 C -0.144 4.144 11 N -0.357 5.357 12 Si 0.730 3.270 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.185 1.185 16 C 0.061 3.939 17 O -0.220 6.220 18 C -0.041 4.041 19 C -0.011 4.011 20 C -0.050 4.050 21 O -0.220 6.220 22 C 0.099 3.901 23 O -0.219 6.219 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.174 0.826 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.770 -9.861 0.757 10.584 hybrid contribution -0.949 -0.357 0.101 1.019 sum 2.821 -10.218 0.859 10.635 Atomic orbital electron populations 1.23092 0.78257 1.03558 1.02111 1.86071 1.21384 1.26194 1.89312 1.17841 0.86906 0.85462 1.01298 1.21371 1.00837 0.89566 1.06332 1.22164 0.91595 0.98445 0.95027 1.17806 0.88496 0.84982 0.80622 1.90591 1.73630 1.28332 1.47573 1.20830 0.92643 0.93552 1.47218 0.90911 1.25968 1.00762 0.94858 0.92863 1.69943 1.37421 0.98386 1.29990 0.86363 0.82269 0.79083 0.79240 1.19335 1.20050 1.18488 1.17948 0.88835 0.82453 1.04676 1.85995 1.76580 1.30566 1.28813 1.22774 0.99672 0.97084 0.84588 1.19917 0.82162 0.93758 1.05234 1.18719 0.88497 0.85676 1.12136 1.87294 1.17397 1.31969 1.85387 1.25507 0.88658 0.76190 0.99789 1.87405 1.19623 1.29905 1.84946 0.92247 0.92203 0.88497 0.82642 0.91303 0.95406 0.89583 0.92802 0.90456 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -5.31 10.50 -19.70 -0.21 -5.51 16 3 C 0.13 2.48 6.70 -39.09 -0.26 2.22 16 4 C -0.16 -3.25 8.41 -39.05 -0.33 -3.58 16 5 C -0.07 -1.66 5.90 -104.65 -0.62 -2.28 16 6 C 0.39 10.57 6.89 -34.63 -0.24 10.33 16 7 O -0.51 -15.58 12.53 -16.91 -0.21 -15.79 16 8 C -0.51 -13.29 8.85 -37.51 -0.33 -13.62 16 9 H 0.07 1.68 6.00 -52.49 -0.32 1.36 16 10 C 0.08 2.03 5.50 -17.31 -0.10 1.93 16 11 N -0.73 -20.04 11.73 55.57 0.65 -19.39 16 12 Si 0.91 18.23 29.56 -169.99 -5.03 13.20 16 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 14 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 16 C 0.11 2.46 5.75 -38.50 -0.22 2.24 16 17 O -0.30 -7.28 8.84 -41.42 -0.37 -7.65 16 18 C 0.05 1.08 10.48 101.05 1.06 2.14 16 19 C 0.03 0.70 7.07 -39.05 -0.28 0.43 16 20 C -0.01 -0.11 7.11 -38.59 -0.27 -0.39 16 21 O -0.30 -5.30 11.39 -45.55 -0.52 -5.82 16 22 C 0.21 2.93 8.89 101.05 0.90 3.83 16 23 O -0.30 -5.53 11.41 -46.59 -0.53 -6.06 16 24 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16 25 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.16 2.83 4.38 -52.49 -0.23 2.60 16 28 H 0.28 6.80 8.29 -40.82 -0.34 6.47 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.05 1.18 7.49 -51.93 -0.39 0.79 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -33.37 290.81 -4.50 -37.87 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.98 Total: 0.23 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 0.30 Total: 4.55 kcal Atomic # 7 Polarization: -20.04 SS G_CDS: 0.65 Total: -19.39 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.84 Total: -40.83 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.37 -4.50 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085341713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.215 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds