Wall clock time and date at job start Tue Mar 31 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35987 * 116.99634 * 2 1 4 4 C 1.37849 * 119.86387 * 0.29251 * 3 2 1 5 5 C 1.40046 * 119.97606 * 180.25302 * 4 3 2 6 6 C 1.47266 * 120.11774 * 179.72965 * 5 4 3 7 7 O 1.21905 * 120.00015 * 179.45330 * 6 5 4 8 8 C 1.41597 * 119.99872 * 359.72652 * 6 5 4 9 9 H 1.07999 * 120.00056 * 359.97438 * 8 6 5 10 10 C 1.40345 * 120.00119 * 179.97438 * 8 6 5 11 11 N 1.30529 * 119.99937 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 120.00148 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47088 * 89.99961 * 12 10 8 14 14 H 1.48495 * 109.47293 * 210.00163 * 12 10 8 15 15 H 1.48502 * 109.47297 * 329.99947 * 12 10 8 16 16 C 1.40628 * 119.76619 * 359.46088 * 5 4 3 17 17 O 1.35765 * 120.06455 * 180.29447 * 16 5 4 18 18 C 1.42896 * 117.00496 * 89.99450 * 17 16 5 19 19 C 1.38714 * 119.86920 * 0.26335 * 16 5 4 20 20 C 1.39194 * 120.01263 * 0.02562 * 19 16 5 21 21 O 1.36366 * 108.64610 * 180.02562 * 20 19 16 22 22 C 1.43962 * 105.54135 * 342.66260 * 21 20 19 23 23 O 1.36651 * 131.34800 * 179.97438 * 19 16 5 24 24 H 1.09002 * 109.47219 * 300.00141 * 1 2 3 25 25 H 1.09000 * 109.47503 * 59.99620 * 1 2 3 26 26 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.01184 * 359.97438 * 4 3 2 28 28 H 0.97000 * 120.00338 * 180.02562 * 11 10 8 29 29 H 1.09006 * 109.46741 * 60.00050 * 18 17 16 30 30 H 1.08999 * 109.47448 * 179.97438 * 18 17 16 31 31 H 1.08994 * 109.47251 * 300.00315 * 18 17 16 32 32 H 1.09004 * 110.57614 * 268.62815 * 22 21 20 33 33 H 1.08998 * 110.70025 * 145.81571 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2927 2.3659 0.0061 5 6 1.9259 3.6151 0.0008 6 6 1.1239 4.8501 0.0012 7 8 1.6773 5.9363 0.0067 8 6 -0.2902 4.7760 0.0013 9 1 -0.7805 3.8137 0.0005 10 6 -1.0546 5.9530 0.0023 11 7 -0.4620 7.1161 0.0027 12 14 -2.9200 5.8553 0.0030 13 1 -3.4137 5.8286 1.4033 14 1 -3.4781 7.0405 -0.6961 15 1 -3.3512 4.6189 -0.6975 16 6 3.3304 3.6858 0.0007 17 8 3.9506 4.8935 0.0015 18 6 4.2470 5.4698 1.2751 19 6 4.0809 2.5192 0.0003 20 6 3.4439 1.2816 -0.0005 21 8 4.3932 0.3026 -0.0001 22 6 5.6125 0.9475 -0.4124 23 8 5.4320 2.3150 -0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 0.2143 2.3070 0.0105 28 1 -0.9903 7.9296 0.0037 29 1 4.9050 4.8022 1.8316 30 1 4.7410 6.4309 1.1330 31 1 3.3216 5.6154 1.8323 32 1 5.7312 0.8865 -1.4942 33 1 6.4717 0.5052 0.0917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085341713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:59 Heat of formation + Delta-G solvation = -160.673370 kcal Electronic energy + Delta-G solvation = -22331.444903 eV Core-core repulsion = 18710.162911 eV Total energy + Delta-G solvation = -3621.281991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.23197 -40.71454 -39.92850 -38.30985 -37.12722 -36.56011 -34.72356 -31.73211 -30.50092 -28.84180 -28.37168 -27.40250 -26.70565 -24.78430 -23.32882 -21.92032 -19.71526 -19.57847 -18.64791 -18.25556 -17.93086 -17.74727 -17.01256 -16.81524 -16.46533 -16.17191 -15.64750 -15.44572 -15.24154 -15.00055 -14.28967 -14.24114 -13.99447 -13.93289 -13.74340 -13.42691 -13.18329 -12.72984 -12.61842 -12.41639 -12.28999 -12.20168 -12.02300 -11.33029 -11.00806 -10.90078 -9.55829 -9.29734 -9.01672 -8.32595 -7.05495 -0.26833 0.00892 1.39791 1.42183 1.58308 1.60973 1.97444 2.18912 2.22849 2.42919 2.52134 2.92038 3.67218 3.72198 3.77980 3.85041 3.94226 4.06144 4.30087 4.30817 4.40863 4.45636 4.47709 4.53328 4.61674 4.77313 4.79006 4.99851 5.10959 5.21777 5.26066 5.78011 5.94982 6.23988 6.58817 6.70027 6.76896 8.26580 8.49891 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.006786 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.999789 B = 4124.946248 C = 5521.013008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.138 3.862 4 C -0.151 4.151 5 C -0.104 4.104 6 C 0.365 3.635 7 O -0.562 6.562 8 C -0.534 4.534 9 H 0.099 0.901 10 C 0.025 3.975 11 N -0.781 5.781 12 Si 0.993 3.007 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.241 1.241 16 C 0.083 3.917 17 O -0.331 6.331 18 C 0.057 3.943 19 C 0.033 3.967 20 C 0.000 4.000 21 O -0.308 6.308 22 C 0.201 3.799 23 O -0.315 6.315 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.172 0.828 28 H 0.282 0.718 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.026 0.974 32 H 0.102 0.898 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -13.182 0.732 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.092 3.908 4 C -0.170 4.170 5 C -0.106 4.106 6 C 0.263 3.737 7 O -0.454 6.454 8 C -0.564 4.564 9 H 0.117 0.883 10 C -0.194 4.194 11 N -0.410 5.410 12 Si 0.811 3.189 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.164 1.164 16 C 0.037 3.963 17 O -0.248 6.248 18 C -0.037 4.037 19 C -0.013 4.013 20 C -0.045 4.045 21 O -0.224 6.224 22 C 0.091 3.909 23 O -0.231 6.231 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.189 0.811 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.767 -12.686 0.684 13.002 hybrid contribution -0.518 0.358 0.117 0.641 sum 2.249 -12.328 0.801 12.557 Atomic orbital electron populations 1.23505 0.75742 1.06230 1.02728 1.86091 1.23908 1.24618 1.88740 1.17781 0.86982 0.85955 1.00083 1.21382 1.01578 0.88613 1.05384 1.21851 0.92001 0.98375 0.98355 1.18423 0.89754 0.85688 0.79867 1.90537 1.74623 1.30327 1.49889 1.21349 0.92697 0.95205 1.47123 0.88305 1.27212 1.06912 0.93925 0.91363 1.70095 1.40220 0.99655 1.31068 0.85073 0.74209 0.79795 0.79779 1.18311 1.19776 1.16389 1.18098 0.89156 0.82901 1.06103 1.85923 1.76808 1.31593 1.30445 1.22825 0.98817 0.98406 0.83693 1.19751 0.83320 0.93278 1.04928 1.18883 0.89183 0.85777 1.10698 1.87284 1.17990 1.31773 1.85394 1.26201 0.88534 0.74080 1.02075 1.87381 1.18222 1.32415 1.85103 0.91595 0.91584 0.84911 0.81061 0.90720 0.93110 0.87911 0.95535 0.88026 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -9.87 10.50 -93.41 -0.98 -10.85 16 3 C 0.14 5.05 6.70 22.59 0.15 5.20 16 4 C -0.15 -5.97 8.41 22.62 0.19 -5.78 16 5 C -0.10 -5.06 5.90 -19.88 -0.12 -5.18 16 6 C 0.36 20.85 6.89 25.47 0.18 21.02 16 7 O -0.56 -36.21 12.53 15.95 0.20 -36.01 16 8 C -0.53 -28.15 8.85 23.61 0.21 -27.94 16 9 H 0.10 4.47 6.00 -2.91 -0.02 4.45 16 10 C 0.03 1.31 5.50 85.40 0.47 1.78 16 11 N -0.78 -44.55 11.73 21.89 0.26 -44.30 16 12 Si 0.99 36.84 29.56 68.60 2.03 38.87 16 13 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 14 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 16 C 0.08 3.95 5.75 22.97 0.13 4.08 16 17 O -0.33 -16.63 8.84 -69.49 -0.61 -17.24 16 18 C 0.06 2.40 10.48 113.37 1.19 3.59 16 19 C 0.03 1.33 7.07 22.61 0.16 1.49 16 20 C 0.00 -0.01 7.11 22.91 0.16 0.15 16 21 O -0.31 -9.90 11.39 -74.20 -0.85 -10.75 16 22 C 0.20 4.97 8.89 113.37 1.01 5.97 16 23 O -0.31 -11.05 11.41 -77.45 -0.88 -11.93 16 24 H 0.07 1.34 7.64 -2.39 -0.02 1.32 16 25 H 0.07 1.35 7.66 -2.39 -0.02 1.33 16 26 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.17 6.01 4.38 -2.91 -0.01 5.99 16 28 H 0.28 14.42 8.29 -92.71 -0.77 13.65 16 29 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.03 1.23 7.49 -2.39 -0.02 1.22 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.17 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -76.54 290.81 5.17 -71.37 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.17 Total: 15.10 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.84 Total: 5.75 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.26 Total: -44.30 kcal Atomic # 8 Polarization: -83.67 SS G_CDS: -3.12 Total: -86.79 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -76.54 5.17 -71.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085341713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.302 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds