Wall clock time and date at job start Tue Mar 31 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46813 * 107.16315 * 3 2 1 5 5 C 1.37107 * 119.99652 * 264.22169 * 4 3 2 6 6 H 1.07997 * 119.99875 * 197.72200 * 5 4 3 7 7 C 1.38951 * 119.99741 * 17.72525 * 5 4 3 8 8 N 1.31408 * 120.00004 * 21.40298 * 7 5 4 9 9 Si 1.86798 * 119.99757 * 201.40599 * 7 5 4 10 10 H 1.48501 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47384 * 120.00176 * 9 7 5 12 12 H 1.48505 * 109.47041 * 240.00245 * 9 7 5 13 13 C 1.34770 * 120.00503 * 84.22661 * 4 3 2 14 14 O 1.21290 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00133 * 0.27466 * 13 4 3 16 16 C 1.50696 * 109.47601 * 179.72633 * 15 13 4 17 17 C 1.38258 * 119.99515 * 264.72597 * 16 15 13 18 18 C 1.38220 * 120.06476 * 179.76671 * 17 16 15 19 19 C 1.38258 * 120.07243 * 0.50665 * 18 17 16 20 20 C 1.38365 * 119.99707 * 359.74324 * 19 18 17 21 21 F 1.35100 * 120.03180 * 179.97438 * 20 19 18 22 22 C 1.38373 * 120.00302 * 84.99310 * 16 15 13 23 23 F 1.35100 * 120.03015 * 0.02562 * 22 16 15 24 24 H 1.08998 * 109.47303 * 347.15428 * 3 2 1 25 25 H 1.08999 * 109.46635 * 227.15794 * 3 2 1 26 26 H 0.97008 * 119.99821 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.46688 * 299.72529 * 15 13 4 28 28 H 1.08995 * 109.46962 * 59.72017 * 15 13 4 29 29 H 1.07993 * 119.96817 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.96101 * 180.24764 * 18 17 16 31 31 H 1.07996 * 119.99727 * 179.76664 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.4085 -1.3197 5 6 3.4377 -0.5412 -2.2478 6 1 4.0539 -0.2730 -3.0932 7 6 2.9911 -1.8487 -2.1005 8 7 1.9378 -2.1034 -1.3572 9 14 3.8879 -3.2443 -2.9592 10 1 5.0337 -2.6968 -3.7291 11 1 4.3881 -4.2085 -1.9467 12 1 2.9552 -3.9371 -3.8842 13 6 3.2095 1.7170 -1.6216 14 8 3.6140 2.0546 -2.7140 15 6 2.8400 2.7609 -0.5993 16 6 3.0623 4.1336 -1.1801 17 6 4.2489 4.8016 -0.9406 18 6 4.4562 6.0587 -1.4765 19 6 3.4733 6.6551 -2.2445 20 6 2.2827 5.9913 -2.4816 21 9 1.3216 6.5737 -3.2315 22 6 2.0767 4.7278 -1.9483 23 9 0.9146 4.0780 -2.1778 24 1 2.9719 -1.0011 0.2285 25 1 2.9710 0.6996 0.7535 26 1 1.6257 -3.0162 -1.2547 27 1 1.7907 2.6472 -0.3269 28 1 3.4612 2.6367 0.2876 29 1 5.0162 4.3390 -0.3377 30 1 5.3854 6.5773 -1.2917 31 1 3.6351 7.6389 -2.6595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087233625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:46 Heat of formation + Delta-G solvation = -59.350328 kcal Electronic energy + Delta-G solvation = -21328.868251 eV Core-core repulsion = 17633.185192 eV Total energy + Delta-G solvation = -3695.683059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.23484 -48.29854 -39.41960 -38.30529 -35.81657 -34.39068 -32.65836 -31.77476 -30.17679 -27.97715 -27.32034 -24.68435 -22.69377 -22.16785 -19.35496 -18.00010 -17.62545 -17.13446 -16.73124 -16.59546 -16.29559 -15.92414 -14.80891 -14.74044 -14.59027 -14.40817 -14.18821 -13.85404 -13.36154 -13.02531 -12.82454 -12.77169 -12.21493 -11.93720 -11.86728 -11.71823 -11.46189 -11.27911 -11.18693 -11.04873 -10.60992 -10.40028 -10.34008 -9.30909 -8.96623 -8.58652 -8.53227 -8.09126 -6.54142 -4.03671 1.07319 1.10400 3.05963 3.20337 3.26299 3.42466 3.51914 3.75111 3.93488 3.96931 4.10310 4.51481 4.57851 4.77044 4.79867 4.88761 5.07989 5.13561 5.17638 5.49634 5.58547 5.68408 5.88286 5.91367 6.06918 6.08117 6.20425 6.37760 6.46034 6.87337 7.44087 7.84133 8.23300 8.71636 8.95294 9.14387 9.67056 10.52005 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.005157 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.448899 B = 5428.735789 C = 5778.917832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.242 3.758 3 C 0.220 3.780 4 N -0.441 5.441 5 C -0.313 4.313 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.927 3.073 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.459 3.541 14 O -0.565 6.565 15 C -0.106 4.106 16 C -0.053 4.053 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.135 4.135 20 C 0.063 3.937 21 F -0.133 7.133 22 C 0.083 3.917 23 F -0.124 7.124 24 H 0.129 0.871 25 H 0.084 0.916 26 H 0.273 0.727 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 11.698 5.830 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.076 4.076 3 C 0.093 3.907 4 N -0.162 5.162 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.515 5.515 9 Si 0.754 3.246 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.247 3.753 14 O -0.447 6.447 15 C -0.146 4.146 16 C -0.055 4.055 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.043 3.957 21 F -0.112 7.112 22 C 0.063 3.937 23 F -0.102 7.102 24 H 0.147 0.853 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.956 11.670 5.278 13.734 hybrid contribution 0.120 -1.007 -0.656 1.208 sum 5.076 10.663 4.623 12.682 Atomic orbital electron populations 1.80912 1.13595 1.11351 1.08998 1.29308 0.95385 0.90837 0.92103 1.18769 0.81663 1.03935 0.86366 1.43636 1.56549 1.04353 1.11635 1.19767 1.29969 0.87290 1.06980 0.87289 1.25291 0.94978 0.99161 0.97767 1.69872 1.19843 1.21586 1.40205 0.85846 0.79576 0.80234 0.78986 1.19082 1.20407 1.20874 1.19804 0.84332 0.82841 0.88298 1.90576 1.49887 1.80253 1.23987 1.20706 1.04112 0.90389 0.99372 1.19403 0.93211 0.95800 0.97072 1.20979 0.95679 0.94432 0.99799 1.20971 0.98818 0.95280 0.97024 1.20973 0.91998 1.01179 1.01251 1.17641 0.88634 0.91959 0.97491 1.91501 1.62115 1.83671 1.73915 1.17536 0.84522 0.90573 1.01095 1.91545 1.45203 1.80670 1.92792 0.85340 0.89785 0.91616 0.88749 0.87915 0.84316 0.84451 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.54 42.16 0.78 -10.39 16 2 C 0.24 5.29 12.97 -20.76 -0.27 5.02 16 3 C 0.22 4.19 4.91 -6.83 -0.03 4.16 16 4 N -0.44 -10.04 2.60 -117.93 -0.31 -10.35 16 5 C -0.31 -7.95 9.32 -14.93 -0.14 -8.09 16 6 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 7 C 0.03 0.77 4.87 -17.47 -0.08 0.69 16 8 N -0.88 -21.91 9.48 55.50 0.53 -21.39 16 9 Si 0.93 19.40 29.60 -169.99 -5.03 14.37 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.46 10.15 7.56 -10.99 -0.08 10.07 16 14 O -0.57 -14.62 15.68 5.55 0.09 -14.53 16 15 C -0.11 -1.76 4.21 -29.04 -0.12 -1.88 16 16 C -0.05 -0.86 4.38 -104.57 -0.46 -1.32 16 17 C -0.09 -1.14 9.68 -39.58 -0.38 -1.52 16 18 C -0.10 -1.10 10.04 -39.58 -0.40 -1.50 16 19 C -0.14 -1.61 10.02 -39.53 -0.40 -2.01 16 20 C 0.06 0.98 7.31 -39.37 -0.29 0.69 16 21 F -0.13 -2.15 17.18 2.25 0.04 -2.11 16 22 C 0.08 1.48 7.25 -39.37 -0.29 1.19 16 23 F -0.12 -2.53 16.48 2.25 0.04 -2.49 16 24 H 0.13 2.50 6.46 -51.93 -0.34 2.16 16 25 H 0.08 1.15 6.67 -51.93 -0.35 0.81 16 26 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 27 H 0.09 1.62 7.18 -51.92 -0.37 1.25 16 28 H 0.10 1.26 7.32 -51.93 -0.38 0.88 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -32.23 290.90 -4.65 -36.88 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -2.23 Total: 0.14 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.94 Total: 5.49 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 1.00 Total: -42.13 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.23 -4.65 -36.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.467 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds