Wall clock time and date at job start Tue Mar 31 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46813 * 107.16315 * 3 2 1 5 5 C 1.37107 * 119.99652 * 264.22169 * 4 3 2 6 6 H 1.07997 * 119.99875 * 197.72200 * 5 4 3 7 7 C 1.38951 * 119.99741 * 17.72525 * 5 4 3 8 8 N 1.31408 * 120.00004 * 21.40298 * 7 5 4 9 9 Si 1.86798 * 119.99757 * 201.40599 * 7 5 4 10 10 H 1.48501 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47384 * 120.00176 * 9 7 5 12 12 H 1.48505 * 109.47041 * 240.00245 * 9 7 5 13 13 C 1.34770 * 120.00503 * 84.22661 * 4 3 2 14 14 O 1.21290 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00133 * 0.27466 * 13 4 3 16 16 C 1.50696 * 109.47601 * 179.72633 * 15 13 4 17 17 C 1.38258 * 119.99515 * 264.72597 * 16 15 13 18 18 C 1.38220 * 120.06476 * 179.76671 * 17 16 15 19 19 C 1.38258 * 120.07243 * 0.50665 * 18 17 16 20 20 C 1.38365 * 119.99707 * 359.74324 * 19 18 17 21 21 F 1.35100 * 120.03180 * 179.97438 * 20 19 18 22 22 C 1.38373 * 120.00302 * 84.99310 * 16 15 13 23 23 F 1.35100 * 120.03015 * 0.02562 * 22 16 15 24 24 H 1.08998 * 109.47303 * 347.15428 * 3 2 1 25 25 H 1.08999 * 109.46635 * 227.15794 * 3 2 1 26 26 H 0.97008 * 119.99821 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.46688 * 299.72529 * 15 13 4 28 28 H 1.08995 * 109.46962 * 59.72017 * 15 13 4 29 29 H 1.07993 * 119.96817 * 0.02562 * 17 16 15 30 30 H 1.08002 * 119.96101 * 180.24764 * 18 17 16 31 31 H 1.07996 * 119.99727 * 179.76664 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.4085 -1.3197 5 6 3.4377 -0.5412 -2.2478 6 1 4.0539 -0.2730 -3.0932 7 6 2.9911 -1.8487 -2.1005 8 7 1.9378 -2.1034 -1.3572 9 14 3.8879 -3.2443 -2.9592 10 1 5.0337 -2.6968 -3.7291 11 1 4.3881 -4.2085 -1.9467 12 1 2.9552 -3.9371 -3.8842 13 6 3.2095 1.7170 -1.6216 14 8 3.6140 2.0546 -2.7140 15 6 2.8400 2.7609 -0.5993 16 6 3.0623 4.1336 -1.1801 17 6 4.2489 4.8016 -0.9406 18 6 4.4562 6.0587 -1.4765 19 6 3.4733 6.6551 -2.2445 20 6 2.2827 5.9913 -2.4816 21 9 1.3216 6.5737 -3.2315 22 6 2.0767 4.7278 -1.9483 23 9 0.9146 4.0780 -2.1778 24 1 2.9719 -1.0011 0.2285 25 1 2.9710 0.6996 0.7535 26 1 1.6257 -3.0162 -1.2547 27 1 1.7907 2.6472 -0.3269 28 1 3.4612 2.6367 0.2876 29 1 5.0162 4.3390 -0.3377 30 1 5.3854 6.5773 -1.2917 31 1 3.6351 7.6389 -2.6595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087233625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:45 Heat of formation + Delta-G solvation = -79.123274 kcal Electronic energy + Delta-G solvation = -21329.725670 eV Core-core repulsion = 17633.185192 eV Total energy + Delta-G solvation = -3696.540478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.50315 -49.59965 -40.89029 -39.58822 -37.57931 -36.19075 -34.08096 -33.41514 -31.22149 -29.45295 -28.81487 -26.39572 -23.76812 -23.38131 -20.94393 -19.77742 -18.86252 -18.35500 -18.26933 -17.92382 -17.78299 -17.27700 -16.48427 -16.01221 -15.97965 -15.72999 -15.57646 -15.38114 -14.76986 -14.64960 -14.32039 -14.10127 -13.77987 -13.44513 -13.22375 -13.08712 -12.93561 -12.88556 -12.63183 -12.36073 -12.21988 -12.05863 -12.03376 -11.13571 -10.55347 -9.93410 -9.81204 -9.68481 -8.40940 -5.96902 0.00476 0.05112 1.37694 1.48357 1.60792 1.79561 2.05189 2.24963 2.33883 2.45139 2.87422 2.99600 3.16738 3.36386 3.53009 3.60017 3.82542 4.00805 4.08446 4.25268 4.35977 4.47973 4.66470 4.87653 4.92229 4.94086 5.06398 5.23997 5.35497 5.48842 5.84520 6.03146 6.39038 7.00298 7.11569 7.34322 7.90613 8.62931 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.005157 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.448899 B = 5428.735789 C = 5778.917832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.255 3.745 3 C 0.220 3.780 4 N -0.454 5.454 5 C -0.339 4.339 6 H 0.082 0.918 7 C 0.004 3.996 8 N -0.894 5.894 9 Si 0.987 3.013 10 H -0.270 1.270 11 H -0.260 1.260 12 H -0.293 1.293 13 C 0.454 3.546 14 O -0.611 6.611 15 C -0.096 4.096 16 C -0.077 4.077 17 C -0.085 4.085 18 C -0.084 4.084 19 C -0.123 4.123 20 C 0.038 3.962 21 F -0.146 7.146 22 C 0.035 3.965 23 F -0.155 7.155 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.274 0.726 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.188 0.812 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 12.853 7.457 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.062 4.062 3 C 0.093 3.907 4 N -0.174 5.174 5 C -0.467 4.467 6 H 0.100 0.900 7 C -0.198 4.198 8 N -0.533 5.533 9 Si 0.811 3.189 10 H -0.195 1.195 11 H -0.184 1.184 12 H -0.219 1.219 13 C 0.244 3.756 14 O -0.496 6.496 15 C -0.135 4.135 16 C -0.078 4.078 17 C -0.103 4.103 18 C -0.102 4.102 19 C -0.142 4.142 20 C 0.018 3.982 21 F -0.125 7.125 22 C 0.016 3.984 23 F -0.134 7.134 24 H 0.145 0.855 25 H 0.164 0.836 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.191 0.809 30 H 0.205 0.795 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.616 12.826 6.940 16.452 hybrid contribution -0.652 -1.267 -1.200 1.862 sum 6.964 11.559 5.740 14.665 Atomic orbital electron populations 1.80912 1.15062 1.12965 1.10362 1.29927 0.96022 0.89469 0.90814 1.19194 0.79741 1.05709 0.86046 1.43816 1.56620 1.04433 1.12575 1.19649 1.30753 0.88672 1.07578 0.90010 1.25903 0.95166 1.00471 0.98238 1.69957 1.20391 1.21929 1.41021 0.84975 0.78046 0.77710 0.78143 1.19465 1.18438 1.21929 1.20750 0.82562 0.83474 0.88808 1.90536 1.51625 1.81124 1.26317 1.20673 1.04427 0.89011 0.99401 1.19580 0.94414 0.95852 0.97992 1.21484 0.94611 0.94925 0.99284 1.21582 0.99813 0.94363 0.94443 1.21479 0.90322 1.02157 1.00201 1.18059 0.89919 0.91932 0.98270 1.91458 1.62940 1.83723 1.74357 1.18139 0.84580 0.92054 1.03678 1.91448 1.47065 1.81501 1.93393 0.85521 0.83557 0.91574 0.89679 0.82691 0.80888 0.79494 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.66 18.54 20.01 0.37 -24.29 16 2 C 0.26 11.05 12.97 89.44 1.16 12.21 16 3 C 0.22 8.00 4.91 84.58 0.42 8.41 16 4 N -0.45 -20.56 2.60 -645.42 -1.68 -22.23 16 5 C -0.34 -17.48 9.32 84.04 0.78 -16.70 16 6 H 0.08 4.58 7.39 -2.91 -0.02 4.56 16 7 C 0.00 0.20 4.87 84.93 0.41 0.62 16 8 N -0.89 -44.68 9.48 21.66 0.21 -44.47 16 9 Si 0.99 39.84 29.60 68.60 2.03 41.88 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 12 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.45 19.98 7.56 87.66 0.66 20.65 16 14 O -0.61 -32.28 15.68 -3.06 -0.05 -32.33 16 15 C -0.10 -3.03 4.21 29.10 0.12 -2.90 16 16 C -0.08 -2.38 4.38 -19.83 -0.09 -2.46 16 17 C -0.09 -1.80 9.68 22.27 0.22 -1.59 16 18 C -0.08 -1.40 10.04 22.27 0.22 -1.17 16 19 C -0.12 -2.55 10.02 22.30 0.22 -2.33 16 20 C 0.04 1.18 7.31 22.41 0.16 1.34 16 21 F -0.15 -4.84 17.18 44.97 0.77 -4.06 16 22 C 0.04 1.28 7.25 22.41 0.16 1.45 16 23 F -0.16 -6.77 16.48 44.97 0.74 -6.02 16 24 H 0.13 4.73 6.46 -2.39 -0.02 4.71 16 25 H 0.15 3.43 6.67 -2.39 -0.02 3.42 16 26 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 27 H 0.08 2.88 7.18 -2.38 -0.02 2.86 16 28 H 0.16 3.11 7.32 -2.39 -0.02 3.10 16 29 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -75.74 290.90 8.05 -67.69 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.19 Total: 6.33 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 4.46 Total: 17.52 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.10 Total: -91.00 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.05 Total: -32.33 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 1.51 Total: -10.09 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.88 kcal Total: -75.74 8.05 -67.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.430 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds