Wall clock time and date at job start Tue Mar 31 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46984 * 189.55522 * 3 2 1 5 5 C 1.37098 * 120.00085 * 264.21113 * 4 3 2 6 6 H 1.08000 * 119.99819 * 198.11755 * 5 4 3 7 7 C 1.38948 * 120.00249 * 18.11505 * 5 4 3 8 8 N 1.31413 * 119.99873 * 18.72523 * 7 5 4 9 9 Si 1.86802 * 119.99748 * 198.73170 * 7 5 4 10 10 H 1.48506 * 109.46992 * 85.59121 * 9 7 5 11 11 H 1.48508 * 109.46797 * 205.58443 * 9 7 5 12 12 H 1.48496 * 109.47321 * 325.58226 * 9 7 5 13 13 C 1.34776 * 119.99436 * 84.20850 * 4 3 2 14 14 O 1.21300 * 119.99608 * 179.97438 * 13 4 3 15 15 C 1.50694 * 120.00322 * 359.97438 * 13 4 3 16 16 C 1.50700 * 109.47140 * 179.97438 * 15 13 4 17 17 C 1.38419 * 120.02614 * 90.00116 * 16 15 13 18 18 F 1.35100 * 120.00979 * 359.70382 * 17 16 15 19 19 C 1.38471 * 119.97870 * 179.97438 * 17 16 15 20 20 C 1.38208 * 120.02209 * 359.97438 * 19 17 16 21 21 C 1.38205 * 120.05349 * 0.02562 * 20 19 17 22 22 C 1.38425 * 120.02770 * 269.98036 * 16 15 13 23 23 F 1.35099 * 120.01029 * 359.97438 * 22 16 15 24 24 H 1.09000 * 109.47298 * 69.55950 * 3 2 1 25 25 H 1.08996 * 109.47587 * 309.56124 * 3 2 1 26 26 H 0.97006 * 119.99507 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.46871 * 60.00401 * 15 13 4 28 28 H 1.08997 * 109.47564 * 300.00160 * 15 13 4 29 29 H 1.07995 * 119.98988 * 180.02562 * 19 17 16 30 30 H 1.08003 * 119.97625 * 180.02562 * 20 19 17 31 31 H 1.08006 * 119.98939 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3630 0.2293 5 6 3.4368 2.1572 -0.8349 6 1 4.0580 3.0273 -0.6821 7 6 2.9832 1.8427 -2.1101 8 7 1.9576 1.0352 -2.2621 9 14 3.8316 2.5674 -3.6082 10 1 4.9918 1.7180 -3.9794 11 1 2.8740 2.6203 -4.7421 12 1 4.3033 3.9401 -3.2943 13 6 3.2090 1.8354 1.4864 14 8 3.6133 2.9632 1.6763 15 6 2.8336 0.9626 2.6561 16 6 3.0514 1.7217 3.9396 17 6 2.0274 2.4829 4.4764 18 9 0.8341 2.5505 3.8467 19 6 2.2285 3.1796 5.6561 20 6 3.4508 3.1146 6.2978 21 6 4.4739 2.3549 5.7629 22 6 4.2754 1.6579 4.5830 23 9 5.2753 0.9146 4.0607 24 1 2.9716 -0.3581 -0.9629 25 1 2.9717 -0.6537 0.7922 26 1 1.6413 0.8154 -3.1524 27 1 3.4541 0.0665 2.6547 28 1 1.7845 0.6782 2.5753 29 1 1.4296 3.7732 6.0753 30 1 3.6066 3.6580 7.2181 31 1 5.4288 2.3053 6.2650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087233628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:28 Heat of formation + Delta-G solvation = -78.063544 kcal Electronic energy + Delta-G solvation = -21526.863318 eV Core-core repulsion = 17830.368793 eV Total energy + Delta-G solvation = -3696.494525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.03382 -49.95789 -40.84529 -39.54036 -37.63003 -36.23132 -34.17422 -33.49235 -31.21055 -29.48041 -28.82748 -26.40400 -23.81489 -23.33318 -20.96026 -19.81020 -19.09164 -18.46644 -18.32102 -17.96114 -17.00915 -16.82125 -16.56551 -16.39213 -16.27154 -15.89272 -15.56594 -15.39701 -14.79740 -14.63577 -14.35620 -13.93431 -13.70390 -13.53471 -13.31305 -13.16079 -12.91787 -12.86369 -12.58451 -12.38309 -12.31280 -12.13730 -12.09460 -11.15568 -10.62205 -9.97411 -9.80904 -9.68994 -8.42469 -6.01472 0.02957 0.04214 1.37925 1.46077 1.56248 1.75659 1.99500 2.20830 2.31443 2.42008 2.96677 2.97773 3.11669 3.45599 3.47801 3.53987 3.70640 3.93409 3.99563 4.26297 4.36236 4.41522 4.58125 4.87210 4.88817 4.93554 5.09065 5.10151 5.23279 5.44765 5.83890 5.98553 6.35333 6.95489 7.06646 7.28805 7.84750 8.60851 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.005681 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.894660 B = 4927.343516 C = 5375.267838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.257 3.743 3 C 0.220 3.780 4 N -0.453 5.453 5 C -0.340 4.340 6 H 0.082 0.918 7 C 0.004 3.996 8 N -0.895 5.895 9 Si 0.991 3.009 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.279 1.279 13 C 0.454 3.546 14 O -0.609 6.609 15 C -0.093 4.093 16 C -0.150 4.150 17 C 0.104 3.896 18 F -0.150 7.150 19 C -0.161 4.161 20 C -0.052 4.052 21 C -0.156 4.156 22 C 0.119 3.881 23 F -0.137 7.137 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.276 0.724 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.165 0.835 30 H 0.190 0.810 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -2.542 15.036 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.173 5.173 5 C -0.468 4.468 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.815 3.185 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.205 1.205 13 C 0.244 3.756 14 O -0.494 6.494 15 C -0.133 4.133 16 C -0.152 4.152 17 C 0.084 3.916 18 F -0.128 7.128 19 C -0.180 4.180 20 C -0.070 4.070 21 C -0.175 4.175 22 C 0.100 3.900 23 F -0.115 7.115 24 H 0.148 0.852 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.147 0.853 28 H 0.112 0.888 29 H 0.182 0.818 30 H 0.207 0.793 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.170 -2.104 14.893 15.608 hybrid contribution 0.189 0.283 -1.689 1.723 sum 4.358 -1.821 13.204 14.023 Atomic orbital electron populations 1.80897 1.14698 1.09795 1.13310 1.29760 0.95824 0.91236 0.89234 1.19126 0.80166 0.85026 1.06359 1.43777 1.56586 1.12150 1.04811 1.19643 1.30622 1.10738 0.85759 0.90018 1.25946 0.95073 0.97582 1.01147 1.69914 1.21586 1.37027 1.24846 0.84967 0.78238 0.78565 0.76689 1.18176 1.20940 1.20451 1.20650 0.82738 0.87769 0.84431 1.90511 1.51678 1.21876 1.85369 1.20471 1.04263 0.99165 0.89417 1.19510 0.94338 1.03330 0.98008 1.17698 0.80790 0.99319 0.93748 1.91477 1.44051 1.94896 1.82411 1.21543 1.01325 1.01144 0.93963 1.21332 0.89710 0.95676 1.00252 1.21585 1.03029 0.98384 0.94465 1.17455 0.83620 0.94553 0.94415 1.91480 1.58910 1.74399 1.86719 0.85219 0.84710 0.91433 0.85279 0.88793 0.81783 0.79313 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.60 18.54 20.01 0.37 -24.23 16 2 C 0.26 11.50 12.95 89.44 1.16 12.66 16 3 C 0.22 8.68 4.91 84.57 0.42 9.10 16 4 N -0.45 -21.82 2.60 -645.42 -1.68 -23.50 16 5 C -0.34 -18.16 9.33 84.04 0.78 -17.38 16 6 H 0.08 4.71 7.37 -2.91 -0.02 4.69 16 7 C 0.00 0.22 4.94 84.93 0.42 0.64 16 8 N -0.89 -45.32 9.33 21.66 0.20 -45.12 16 9 Si 0.99 40.75 29.59 68.60 2.03 42.78 16 10 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.45 21.58 7.56 87.66 0.66 22.24 16 14 O -0.61 -33.73 15.69 -3.09 -0.05 -33.78 16 15 C -0.09 -3.42 4.08 29.10 0.12 -3.30 16 16 C -0.15 -5.14 4.38 -19.78 -0.09 -5.22 16 17 C 0.10 3.42 7.24 22.37 0.16 3.58 16 18 F -0.15 -5.71 16.48 44.97 0.74 -4.97 16 19 C -0.16 -3.73 10.03 22.32 0.22 -3.50 16 20 C -0.05 -0.90 10.04 22.25 0.22 -0.68 16 21 C -0.16 -3.24 10.02 22.32 0.22 -3.01 16 22 C 0.12 3.51 7.24 22.37 0.16 3.67 16 23 F -0.14 -4.18 16.48 44.97 0.74 -3.44 16 24 H 0.13 5.21 6.40 -2.39 -0.02 5.20 16 25 H 0.14 3.84 6.68 -2.39 -0.02 3.82 16 26 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 27 H 0.13 3.80 6.91 -2.39 -0.02 3.78 16 28 H 0.09 3.44 7.01 -2.39 -0.02 3.43 16 29 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.43 289.62 8.02 -64.41 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.19 Total: 9.05 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 4.47 Total: 18.80 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -1.11 Total: -92.85 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.05 Total: -33.78 kcal Atomic # 9 Polarization: -9.89 SS G_CDS: 1.48 Total: -8.41 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -72.43 8.02 -64.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.652 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds