Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46813 * 107.16315 * 3 2 1 5 5 C 1.37107 * 119.99652 * 264.22169 * 4 3 2 6 6 H 1.07997 * 119.99875 * 197.72200 * 5 4 3 7 7 C 1.38951 * 119.99741 * 17.72525 * 5 4 3 8 8 N 1.31408 * 120.00004 * 21.40298 * 7 5 4 9 9 Si 1.86798 * 119.99757 * 201.40599 * 7 5 4 10 10 H 1.48501 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47384 * 120.00176 * 9 7 5 12 12 H 1.48505 * 109.47041 * 240.00245 * 9 7 5 13 13 C 1.34770 * 120.00503 * 84.22661 * 4 3 2 14 14 O 1.21290 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00133 * 0.27466 * 13 4 3 16 16 C 1.50696 * 109.47601 * 179.72633 * 15 13 4 17 17 C 1.38256 * 119.96071 * 269.72516 * 16 15 13 18 18 C 1.38214 * 120.06939 * 179.76379 * 17 16 15 19 19 C 1.38413 * 120.00001 * 0.50711 * 18 17 16 20 20 F 1.35100 * 120.03884 * 179.72137 * 19 18 17 21 21 C 1.38651 * 119.92571 * 359.74804 * 19 18 17 22 22 F 1.35102 * 120.03353 * 180.02562 * 21 19 18 23 23 C 1.38213 * 119.96685 * 89.99308 * 16 15 13 24 24 H 1.08998 * 109.47303 * 347.15428 * 3 2 1 25 25 H 1.08999 * 109.46635 * 227.15794 * 3 2 1 26 26 H 0.97008 * 119.99821 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.46688 * 299.72529 * 15 13 4 28 28 H 1.08995 * 109.46962 * 59.72017 * 15 13 4 29 29 H 1.07998 * 119.96940 * 0.02562 * 17 16 15 30 30 H 1.07999 * 120.00566 * 180.25267 * 18 17 16 31 31 H 1.08002 * 119.99849 * 359.96153 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.4085 -1.3197 5 6 3.4377 -0.5412 -2.2478 6 1 4.0539 -0.2730 -3.0932 7 6 2.9911 -1.8487 -2.1005 8 7 1.9378 -2.1034 -1.3572 9 14 3.8879 -3.2443 -2.9592 10 1 5.0337 -2.6968 -3.7291 11 1 4.3881 -4.2085 -1.9467 12 1 2.9552 -3.9371 -3.8842 13 6 3.2095 1.7170 -1.6216 14 8 3.6140 2.0546 -2.7140 15 6 2.8400 2.7609 -0.5993 16 6 3.0623 4.1336 -1.1801 17 6 4.2865 4.7578 -1.0277 18 6 4.4943 6.0148 -1.5636 19 6 3.4731 6.6543 -2.2446 20 9 3.6736 7.8853 -2.7639 21 6 2.2438 6.0304 -2.3928 22 9 1.2456 6.6525 -3.0576 23 6 2.0405 4.7695 -1.8596 24 1 2.9719 -1.0011 0.2285 25 1 2.9710 0.6996 0.7535 26 1 1.6257 -3.0162 -1.2547 27 1 1.7907 2.6472 -0.3269 28 1 3.4612 2.6367 0.2876 29 1 5.0825 4.2611 -0.4930 30 1 5.4523 6.4997 -1.4475 31 1 1.0835 4.2823 -1.9747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087233631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -61.446377 kcal Electronic energy + Delta-G solvation = -20896.340923 eV Core-core repulsion = 17200.566973 eV Total energy + Delta-G solvation = -3695.773951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.35340 -48.43161 -39.56527 -38.28795 -35.85278 -34.43259 -32.47856 -31.73805 -30.69520 -27.80480 -27.23797 -24.64454 -23.17115 -21.94097 -19.37715 -18.04061 -17.77606 -17.08602 -16.79253 -16.61025 -16.28880 -16.11763 -14.86406 -14.81474 -14.58646 -14.38300 -14.17712 -13.84518 -13.76719 -13.08393 -12.96792 -12.86025 -12.15138 -11.98814 -11.79247 -11.65114 -11.53036 -11.30805 -11.23517 -11.10226 -10.65527 -10.42762 -10.37913 -9.34692 -8.99862 -8.80224 -8.41900 -8.13159 -6.58367 -4.07763 1.01748 1.11492 3.03233 3.18179 3.23791 3.39830 3.48997 3.70107 3.87955 3.89760 4.06673 4.41104 4.58772 4.68410 4.78695 4.86015 5.06521 5.12945 5.21666 5.48552 5.58272 5.70348 5.81424 5.90299 6.00283 6.07426 6.09025 6.41973 6.51106 6.84231 7.40252 7.80514 8.19294 8.65221 8.91772 9.10619 9.63151 10.47696 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025627 B = 0.004458 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.352987 B = 6279.085281 C = 6704.255405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.220 3.780 4 N -0.442 5.442 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.877 5.877 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.456 3.544 14 O -0.565 6.565 15 C -0.105 4.105 16 C -0.025 4.025 17 C -0.087 4.087 18 C -0.124 4.124 19 C 0.055 3.945 20 F -0.135 7.135 21 C 0.068 3.932 22 F -0.133 7.133 23 C -0.113 4.113 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.273 0.727 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 9.798 6.076 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.075 4.075 3 C 0.092 3.908 4 N -0.162 5.162 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.515 5.515 9 Si 0.753 3.247 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.446 6.446 15 C -0.145 4.145 16 C -0.026 4.026 17 C -0.105 4.105 18 C -0.143 4.143 19 C 0.035 3.965 20 F -0.114 7.114 21 C 0.048 3.952 22 F -0.112 7.112 23 C -0.132 4.132 24 H 0.146 0.854 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.773 9.852 5.516 11.905 hybrid contribution 0.388 -0.673 -0.691 1.039 sum 4.161 9.180 4.825 11.174 Atomic orbital electron populations 1.80920 1.13596 1.11447 1.09101 1.29324 0.95379 0.90765 0.92010 1.18774 0.81620 1.04002 0.86413 1.43657 1.56552 1.04432 1.11584 1.19765 1.29994 0.87315 1.06963 0.87285 1.25282 0.94962 0.99161 0.97726 1.69860 1.19857 1.21629 1.40191 0.85856 0.79604 0.80253 0.79007 1.19070 1.20405 1.20870 1.19877 0.84463 0.82809 0.88399 1.90590 1.49790 1.80231 1.24037 1.20773 1.03898 0.90679 0.99191 1.19310 0.92782 0.94691 0.95770 1.20939 0.96795 0.93614 0.99191 1.20977 0.98369 0.96117 0.98855 1.17633 0.94256 0.82528 1.02132 1.91492 1.95432 1.39468 1.85002 1.17598 0.84900 0.93233 0.99491 1.91506 1.59171 1.82165 1.78311 1.20954 1.01497 0.92452 0.98248 0.85382 0.89689 0.91598 0.88829 0.88184 0.84232 0.83895 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.59 18.54 42.16 0.78 -9.81 16 2 C 0.24 5.00 12.97 -20.76 -0.27 4.73 16 3 C 0.22 3.93 4.91 -6.83 -0.03 3.90 16 4 N -0.44 -9.51 2.60 -117.93 -0.31 -9.82 16 5 C -0.31 -7.67 9.32 -14.93 -0.14 -7.81 16 6 H 0.11 2.85 7.39 -52.49 -0.39 2.46 16 7 C 0.03 0.77 4.87 -17.47 -0.08 0.68 16 8 N -0.88 -21.22 9.48 55.50 0.53 -20.69 16 9 Si 0.93 18.93 29.60 -169.99 -5.03 13.90 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.46 9.40 7.56 -10.99 -0.08 9.31 16 14 O -0.56 -13.84 15.68 5.55 0.09 -13.75 16 15 C -0.11 -1.56 4.43 -29.04 -0.13 -1.69 16 16 C -0.02 -0.36 4.37 -104.63 -0.46 -0.82 16 17 C -0.09 -1.10 9.69 -39.58 -0.38 -1.48 16 18 C -0.12 -1.51 10.02 -39.53 -0.40 -1.91 16 19 C 0.05 0.78 7.31 -39.36 -0.29 0.49 16 20 F -0.14 -1.96 17.18 2.25 0.04 -1.92 16 21 C 0.07 1.04 7.31 -39.37 -0.29 0.75 16 22 F -0.13 -2.12 17.18 2.25 0.04 -2.08 16 23 C -0.11 -1.72 9.68 -39.53 -0.38 -2.11 16 24 H 0.13 2.38 6.46 -51.93 -0.34 2.05 16 25 H 0.09 1.08 6.67 -51.93 -0.35 0.73 16 26 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.09 1.35 7.47 -51.92 -0.39 0.96 16 28 H 0.10 1.11 7.35 -51.93 -0.38 0.73 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -30.25 291.86 -4.65 -34.90 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.24 Total: 0.82 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.93 Total: 4.06 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 1.00 Total: -40.32 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.00 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.25 -4.65 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.548 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds