Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46813 * 107.16315 * 3 2 1 5 5 C 1.37107 * 119.99652 * 264.22169 * 4 3 2 6 6 H 1.07997 * 119.99875 * 197.72200 * 5 4 3 7 7 C 1.38951 * 119.99741 * 17.72525 * 5 4 3 8 8 N 1.31408 * 120.00004 * 21.40298 * 7 5 4 9 9 Si 1.86798 * 119.99757 * 201.40599 * 7 5 4 10 10 H 1.48501 * 109.47056 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47384 * 120.00176 * 9 7 5 12 12 H 1.48505 * 109.47041 * 240.00245 * 9 7 5 13 13 C 1.34770 * 120.00503 * 84.22661 * 4 3 2 14 14 O 1.21290 * 120.00453 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00133 * 0.27466 * 13 4 3 16 16 C 1.50696 * 109.47601 * 179.72633 * 15 13 4 17 17 C 1.38256 * 119.96071 * 269.72516 * 16 15 13 18 18 C 1.38214 * 120.06939 * 179.76379 * 17 16 15 19 19 C 1.38413 * 120.00001 * 0.50711 * 18 17 16 20 20 F 1.35100 * 120.03884 * 179.72137 * 19 18 17 21 21 C 1.38651 * 119.92571 * 359.74804 * 19 18 17 22 22 F 1.35102 * 120.03353 * 180.02562 * 21 19 18 23 23 C 1.38213 * 119.96685 * 89.99308 * 16 15 13 24 24 H 1.08998 * 109.47303 * 347.15428 * 3 2 1 25 25 H 1.08999 * 109.46635 * 227.15794 * 3 2 1 26 26 H 0.97008 * 119.99821 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.46688 * 299.72529 * 15 13 4 28 28 H 1.08995 * 109.46962 * 59.72017 * 15 13 4 29 29 H 1.07998 * 119.96940 * 0.02562 * 17 16 15 30 30 H 1.07999 * 120.00566 * 180.25267 * 18 17 16 31 31 H 1.08002 * 119.99849 * 359.96153 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.4085 -1.3197 5 6 3.4377 -0.5412 -2.2478 6 1 4.0539 -0.2730 -3.0932 7 6 2.9911 -1.8487 -2.1005 8 7 1.9378 -2.1034 -1.3572 9 14 3.8879 -3.2443 -2.9592 10 1 5.0337 -2.6968 -3.7291 11 1 4.3881 -4.2085 -1.9467 12 1 2.9552 -3.9371 -3.8842 13 6 3.2095 1.7170 -1.6216 14 8 3.6140 2.0546 -2.7140 15 6 2.8400 2.7609 -0.5993 16 6 3.0623 4.1336 -1.1801 17 6 4.2865 4.7578 -1.0277 18 6 4.4943 6.0148 -1.5636 19 6 3.4731 6.6543 -2.2446 20 9 3.6736 7.8853 -2.7639 21 6 2.2438 6.0304 -2.3928 22 9 1.2456 6.6525 -3.0576 23 6 2.0405 4.7695 -1.8596 24 1 2.9719 -1.0011 0.2285 25 1 2.9710 0.6996 0.7535 26 1 1.6257 -3.0162 -1.2547 27 1 1.7907 2.6472 -0.3269 28 1 3.4612 2.6367 0.2876 29 1 5.0825 4.2611 -0.4930 30 1 5.4523 6.4997 -1.4475 31 1 1.0835 4.2823 -1.9747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087233631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -78.561408 kcal Electronic energy + Delta-G solvation = -20897.083087 eV Core-core repulsion = 17200.566973 eV Total energy + Delta-G solvation = -3696.516114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.50393 -49.58801 -40.94065 -39.59598 -37.51221 -36.13096 -33.94687 -33.22084 -31.76378 -29.29741 -28.58714 -26.27598 -24.23536 -23.14492 -20.87747 -19.72126 -18.91255 -18.29089 -18.11782 -17.98132 -17.73133 -17.31673 -16.47237 -16.03031 -16.02121 -15.60350 -15.50031 -15.15536 -14.93425 -14.66577 -14.46218 -14.13812 -13.76155 -13.41214 -13.19370 -13.02539 -12.85221 -12.79602 -12.69728 -12.31408 -12.20182 -12.06521 -12.00280 -11.09256 -10.46611 -10.02104 -9.88291 -9.59059 -8.37982 -5.92712 -0.08395 0.05902 1.39965 1.51043 1.62259 1.85755 2.09748 2.30469 2.32957 2.43061 2.80905 3.03526 3.23343 3.31647 3.54146 3.64801 3.70292 4.04447 4.15207 4.17547 4.41283 4.60297 4.71331 4.80225 4.90317 4.96293 4.98881 5.08252 5.43605 5.52523 5.78272 6.08060 6.43364 7.06053 7.16868 7.40203 7.96747 8.65563 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025627 B = 0.004458 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.352987 B = 6279.085281 C = 6704.255405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.456 5.456 5 C -0.336 4.336 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.293 1.293 13 C 0.454 3.546 14 O -0.611 6.611 15 C -0.094 4.094 16 C -0.040 4.040 17 C -0.079 4.079 18 C -0.113 4.113 19 C 0.045 3.955 20 F -0.139 7.139 21 C 0.045 3.955 22 F -0.144 7.144 23 C -0.128 4.128 24 H 0.123 0.877 25 H 0.149 0.851 26 H 0.273 0.727 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 10.045 7.860 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.060 4.060 3 C 0.092 3.908 4 N -0.176 5.176 5 C -0.463 4.463 6 H 0.099 0.901 7 C -0.196 4.196 8 N -0.532 5.532 9 Si 0.807 3.193 10 H -0.196 1.196 11 H -0.187 1.187 12 H -0.220 1.220 13 C 0.244 3.756 14 O -0.496 6.496 15 C -0.133 4.133 16 C -0.041 4.041 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.025 3.975 20 F -0.118 7.118 21 C 0.025 3.975 22 F -0.123 7.123 23 C -0.147 4.147 24 H 0.141 0.859 25 H 0.167 0.833 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.168 0.832 29 H 0.192 0.808 30 H 0.196 0.804 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.530 10.100 7.330 13.650 hybrid contribution -0.141 -0.694 -1.289 1.471 sum 5.390 9.406 6.041 12.410 Atomic orbital electron populations 1.80928 1.14996 1.12974 1.10416 1.29882 0.95928 0.89461 0.90753 1.19180 0.79825 1.05656 0.86093 1.43818 1.56771 1.04532 1.12461 1.19610 1.30563 0.88669 1.07488 0.90074 1.25807 0.95193 1.00359 0.98229 1.69940 1.20395 1.21826 1.41058 0.85049 0.78124 0.78016 0.78154 1.19600 1.18744 1.22011 1.20844 0.82480 0.83361 0.88889 1.90564 1.51467 1.81088 1.26460 1.20758 1.05142 0.88514 0.98933 1.19454 0.93546 0.94794 0.96296 1.21355 0.96553 0.93476 0.98274 1.21380 0.98960 0.95794 0.97002 1.17901 0.94451 0.82562 1.02557 1.91481 1.95412 1.39726 1.85161 1.17831 0.85426 0.93748 1.00504 1.91467 1.59765 1.82373 1.78699 1.21027 1.01885 0.92712 0.99039 0.85908 0.83338 0.91687 0.88275 0.83161 0.80847 0.80393 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.71 18.54 20.01 0.37 -22.34 16 2 C 0.26 10.17 12.97 89.44 1.16 11.33 16 3 C 0.22 7.28 4.91 84.58 0.42 7.69 16 4 N -0.46 -19.03 2.60 -645.42 -1.68 -20.71 16 5 C -0.34 -16.44 9.32 84.04 0.78 -15.66 16 6 H 0.08 4.36 7.39 -2.91 -0.02 4.34 16 7 C 0.01 0.29 4.87 84.93 0.41 0.70 16 8 N -0.89 -42.74 9.48 21.66 0.21 -42.53 16 9 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 10 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 11 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 12 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.45 18.01 7.56 87.66 0.66 18.67 16 14 O -0.61 -29.90 15.68 -3.06 -0.05 -29.94 16 15 C -0.09 -2.49 4.43 29.10 0.13 -2.36 16 16 C -0.04 -1.08 4.37 -19.87 -0.09 -1.17 16 17 C -0.08 -1.69 9.69 22.27 0.22 -1.47 16 18 C -0.11 -2.38 10.02 22.31 0.22 -2.15 16 19 C 0.05 1.23 7.31 22.41 0.16 1.39 16 20 F -0.14 -3.88 17.18 44.97 0.77 -3.11 16 21 C 0.04 1.38 7.31 22.41 0.16 1.54 16 22 F -0.14 -4.73 17.18 44.97 0.77 -3.95 16 23 C -0.13 -3.86 9.68 22.30 0.22 -3.65 16 24 H 0.12 4.30 6.46 -2.39 -0.02 4.29 16 25 H 0.15 2.99 6.67 -2.39 -0.02 2.98 16 26 H 0.27 12.69 8.31 -92.70 -0.77 11.92 16 27 H 0.10 2.58 7.47 -2.38 -0.02 2.56 16 28 H 0.15 2.44 7.35 -2.39 -0.02 2.42 16 29 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -67.90 291.86 8.08 -59.82 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.19 Total: 7.20 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 4.46 Total: 14.87 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.10 Total: -85.58 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 1.55 Total: -7.06 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -67.90 8.08 -59.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.738 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds