Wall clock time and date at job start Tue Mar 31 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47040 * 2 1 4 4 C 1.47205 * 109.46708 * 119.99660 * 2 1 3 5 5 N 2.60809 * 109.46870 * 119.99745 * 2 1 3 6 6 S 1.81399 * 109.47264 * 239.99552 * 2 1 3 7 7 O 1.42106 * 110.54329 * 175.99492 * 6 2 1 8 8 O 1.42098 * 110.54477 * 312.74265 * 6 2 1 9 9 N 1.65593 * 104.44898 * 64.36703 * 6 2 1 10 10 C 1.38860 * 120.00238 * 295.79271 * 9 6 2 11 11 C 1.39566 * 119.83836 * 313.39652 * 10 9 6 12 12 C 1.36344 * 120.15761 * 179.71765 * 11 10 9 13 13 C 1.40884 * 119.83378 * 0.55144 * 12 11 10 14 14 C 1.41136 * 120.15308 * 179.69724 * 13 12 11 15 15 H 1.08008 * 120.00075 * 154.41876 * 14 13 12 16 16 C 1.39863 * 120.00374 * 334.42024 * 14 13 12 17 17 N 1.30903 * 119.99926 * 341.42378 * 16 14 13 18 18 Si 1.86797 * 120.00242 * 161.42449 * 16 14 13 19 19 H 1.48498 * 109.47175 * 94.98533 * 18 16 14 20 20 H 1.48507 * 109.46968 * 214.98562 * 18 16 14 21 21 H 1.48496 * 109.46977 * 334.97963 * 18 16 14 22 22 C 1.40887 * 119.69204 * 359.72577 * 13 12 11 23 23 C 1.36333 * 119.83577 * 359.97438 * 22 13 12 24 24 H 1.08997 * 109.47145 * 300.00317 * 1 2 3 25 25 H 1.09007 * 109.46787 * 60.00563 * 1 2 3 26 26 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99904 * 115.79067 * 9 6 2 28 28 H 1.07994 * 119.92215 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.08159 * 180.28192 * 12 11 10 30 30 H 0.97001 * 120.00498 * 180.02562 * 17 16 14 31 31 H 1.08002 * 120.08182 * 179.97438 * 22 13 12 32 32 H 1.07997 * 119.92119 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2294 2.1296 6 16 2.1347 -0.8552 -1.4810 7 8 3.5525 -0.7886 -1.5514 8 8 1.4495 -2.0871 -1.6602 9 7 1.6184 0.0863 -2.7416 10 6 0.2594 0.2442 -2.9792 11 6 -0.5798 -0.8710 -2.9783 12 6 -1.9160 -0.7228 -3.2052 13 6 -2.4471 0.5585 -3.4524 14 6 -3.8283 0.7188 -3.6944 15 1 -4.3085 1.6619 -3.4785 16 6 -4.5753 -0.3434 -4.2138 17 7 -3.9700 -1.3394 -4.8098 18 14 -6.4367 -0.3410 -4.0571 19 1 -7.0368 0.2211 -5.2937 20 1 -6.9187 -1.7318 -3.8608 21 1 -6.8342 0.4896 -2.8921 22 6 -1.5930 1.6789 -3.4575 23 6 -0.2598 1.5165 -3.2231 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2653 0.5276 -3.3140 28 1 -0.1705 -1.8531 -2.7934 29 1 -2.5650 -1.5860 -3.1997 30 1 -4.4880 -2.0760 -5.1704 31 1 -1.9933 2.6640 -3.6467 32 1 0.3963 2.3744 -3.2271 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088473475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:16 Heat of formation + Delta-G solvation = -21.605322 kcal Electronic energy + Delta-G solvation = -19512.511503 eV Core-core repulsion = 16372.305576 eV Total energy + Delta-G solvation = -3140.205926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.37967 -37.12622 -36.93851 -35.83915 -35.00875 -33.16163 -32.94066 -29.71107 -28.91600 -25.01864 -24.77747 -21.39847 -21.09635 -19.72858 -18.15021 -17.54016 -17.34116 -17.05915 -16.03811 -15.39572 -15.24630 -14.30990 -14.16417 -13.74476 -13.43220 -13.32772 -12.93641 -12.74175 -12.62544 -12.41678 -12.20983 -11.96624 -11.81994 -11.70844 -11.62162 -11.32813 -11.17250 -11.08450 -10.85204 -10.59210 -10.03520 -9.85405 -9.31269 -9.26975 -7.78743 -7.33114 -6.98609 -4.53000 0.15670 2.48177 2.50953 2.54979 2.84234 2.88574 2.96805 2.98701 3.04513 3.40716 3.76821 3.95726 4.23955 4.36658 4.84625 4.88481 5.41245 5.66020 5.79779 6.01326 6.03814 6.25087 6.30225 6.81382 6.83141 6.97031 6.99003 7.21060 7.27417 7.41179 7.69688 7.83425 7.93243 8.04254 8.40453 8.64082 8.73023 9.93271 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.004921 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.650234 B = 5689.073605 C = 5920.689733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.501 4.501 3 H 0.169 0.831 4 C 0.217 3.783 5 N -0.404 5.404 6 S 2.602 3.398 7 O -0.964 6.964 8 O -0.930 6.930 9 N -1.016 6.016 10 C -0.031 4.031 11 C -0.110 4.110 12 C -0.155 4.155 13 C 0.113 3.887 14 C -0.446 4.446 15 H 0.083 0.917 16 C 0.074 3.926 17 N -0.775 5.775 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.219 4.219 23 C -0.082 4.082 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.414 0.586 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.286 0.714 31 H 0.098 0.902 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 4.120 3.208 6.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.607 4.607 3 H 0.187 0.813 4 C -0.102 4.102 5 N -0.080 5.080 6 S 2.691 3.309 7 O -0.954 6.954 8 O -0.919 6.919 9 N -0.770 5.770 10 C -0.128 4.128 11 C -0.131 4.131 12 C -0.175 4.175 13 C 0.109 3.891 14 C -0.475 4.475 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.399 5.399 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.240 4.240 23 C -0.104 4.104 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.101 0.899 27 H 0.251 0.749 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.648 2.183 4.621 6.909 hybrid contribution -1.000 1.060 -0.321 1.492 sum 3.648 3.243 4.300 6.505 Atomic orbital electron populations 1.21938 0.85982 1.05746 1.06785 1.28627 1.09226 1.13053 1.09827 0.81314 1.27715 0.93742 0.94199 0.94539 1.81225 1.08412 1.08745 1.09664 1.06360 0.73530 0.76092 0.74892 1.93563 1.29275 1.87031 1.85503 1.93581 1.74951 1.40373 1.83024 1.52322 1.13086 1.70154 1.41400 1.16760 0.80746 0.93987 1.21285 1.21233 0.94658 0.96991 1.00209 1.20973 0.93709 0.98283 1.04532 1.17757 0.92946 0.91316 0.87065 1.19682 0.93429 0.98750 1.35599 0.89937 1.25996 1.01694 0.94422 0.92516 1.69845 1.38895 1.07774 1.23409 0.86275 0.81669 0.78873 0.79916 1.19422 1.19823 1.18215 1.20607 0.92614 0.98225 1.12548 1.20313 0.95290 0.94082 1.00729 0.90607 0.86687 0.89947 0.74907 0.85433 0.86151 0.90314 0.88420 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.16 37.16 0.30 -1.59 16 2 C -0.50 -6.18 3.40 -29.52 -0.10 -6.28 16 3 H 0.17 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.22 3.14 14.65 -20.76 -0.30 2.84 16 5 N -0.40 -6.59 18.54 42.16 0.78 -5.81 16 6 S 2.60 39.04 4.96 -107.50 -0.53 38.51 16 7 O -0.96 -16.14 18.08 -57.54 -1.04 -17.18 16 8 O -0.93 -16.90 14.71 -57.54 -0.85 -17.75 16 9 N -1.02 -14.77 5.63 32.51 0.18 -14.59 16 10 C -0.03 -0.54 3.96 -83.69 -0.33 -0.87 16 11 C -0.11 -2.23 8.02 -39.77 -0.32 -2.55 16 12 C -0.15 -3.49 8.63 -39.26 -0.34 -3.83 16 13 C 0.11 2.57 5.56 -106.79 -0.59 1.97 16 14 C -0.45 -10.30 9.02 -37.87 -0.34 -10.64 16 15 H 0.08 1.81 7.91 -52.48 -0.42 1.40 16 16 C 0.07 1.66 5.11 -17.34 -0.09 1.57 16 17 N -0.78 -18.12 11.07 55.54 0.61 -17.50 16 18 Si 0.91 16.73 29.60 -169.99 -5.03 11.69 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 22 C -0.22 -4.41 9.74 -39.27 -0.38 -4.79 16 23 C -0.08 -1.44 9.35 -39.77 -0.37 -1.81 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.11 1.62 4.60 -51.93 -0.24 1.39 16 26 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 27 H 0.41 5.01 8.91 -34.46 -0.31 4.71 16 28 H 0.13 2.63 5.57 -52.49 -0.29 2.34 16 29 H 0.12 2.88 6.26 -52.49 -0.33 2.55 16 30 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.10 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -27.84 291.46 -7.17 -35.01 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.82 Total: 9.21 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -2.87 Total: -25.99 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 1.58 Total: -37.90 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.89 Total: -34.93 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 39.04 SS G_CDS: -0.53 Total: 38.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.84 -7.17 -35.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088473475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.403 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds