Wall clock time and date at job start Tue Mar 31 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47040 * 2 1 4 4 C 1.47205 * 109.46708 * 119.99660 * 2 1 3 5 5 N 2.60809 * 109.46870 * 119.99745 * 2 1 3 6 6 S 1.81399 * 109.47264 * 239.99552 * 2 1 3 7 7 O 1.42106 * 110.54329 * 175.99492 * 6 2 1 8 8 O 1.42098 * 110.54477 * 312.74265 * 6 2 1 9 9 N 1.65593 * 104.44898 * 64.36703 * 6 2 1 10 10 C 1.38860 * 120.00238 * 295.79271 * 9 6 2 11 11 C 1.39566 * 119.83836 * 313.39652 * 10 9 6 12 12 C 1.36344 * 120.15761 * 179.71765 * 11 10 9 13 13 C 1.40884 * 119.83378 * 0.55144 * 12 11 10 14 14 C 1.41136 * 120.15308 * 179.69724 * 13 12 11 15 15 H 1.08008 * 120.00075 * 154.41876 * 14 13 12 16 16 C 1.39863 * 120.00374 * 334.42024 * 14 13 12 17 17 N 1.30903 * 119.99926 * 341.42378 * 16 14 13 18 18 Si 1.86797 * 120.00242 * 161.42449 * 16 14 13 19 19 H 1.48498 * 109.47175 * 94.98533 * 18 16 14 20 20 H 1.48507 * 109.46968 * 214.98562 * 18 16 14 21 21 H 1.48496 * 109.46977 * 334.97963 * 18 16 14 22 22 C 1.40887 * 119.69204 * 359.72577 * 13 12 11 23 23 C 1.36333 * 119.83577 * 359.97438 * 22 13 12 24 24 H 1.08997 * 109.47145 * 300.00317 * 1 2 3 25 25 H 1.09007 * 109.46787 * 60.00563 * 1 2 3 26 26 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99904 * 115.79067 * 9 6 2 28 28 H 1.07994 * 119.92215 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.08159 * 180.28192 * 12 11 10 30 30 H 0.97001 * 120.00498 * 180.02562 * 17 16 14 31 31 H 1.08002 * 120.08182 * 179.97438 * 22 13 12 32 32 H 1.07997 * 119.92119 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2294 2.1296 6 16 2.1347 -0.8552 -1.4810 7 8 3.5525 -0.7886 -1.5514 8 8 1.4495 -2.0871 -1.6602 9 7 1.6184 0.0863 -2.7416 10 6 0.2594 0.2442 -2.9792 11 6 -0.5798 -0.8710 -2.9783 12 6 -1.9160 -0.7228 -3.2052 13 6 -2.4471 0.5585 -3.4524 14 6 -3.8283 0.7188 -3.6944 15 1 -4.3085 1.6619 -3.4785 16 6 -4.5753 -0.3434 -4.2138 17 7 -3.9700 -1.3394 -4.8098 18 14 -6.4367 -0.3410 -4.0571 19 1 -7.0368 0.2211 -5.2937 20 1 -6.9187 -1.7318 -3.8608 21 1 -6.8342 0.4896 -2.8921 22 6 -1.5930 1.6789 -3.4575 23 6 -0.2598 1.5165 -3.2231 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2653 0.5276 -3.3140 28 1 -0.1705 -1.8531 -2.7934 29 1 -2.5650 -1.5860 -3.1997 30 1 -4.4880 -2.0760 -5.1704 31 1 -1.9933 2.6640 -3.6467 32 1 0.3963 2.3744 -3.2271 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088473475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:15 Heat of formation + Delta-G solvation = -40.165749 kcal Electronic energy + Delta-G solvation = -19513.316343 eV Core-core repulsion = 16372.305576 eV Total energy + Delta-G solvation = -3141.010767 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90328 -38.36047 -38.27576 -37.19624 -36.50225 -34.56461 -34.21603 -31.30203 -30.47725 -26.52173 -25.97770 -22.96718 -22.63163 -21.04130 -19.38583 -19.15709 -18.62634 -18.40912 -17.28195 -16.96712 -16.53271 -15.73169 -15.47238 -15.25530 -14.70456 -14.55660 -14.43753 -14.08753 -13.90616 -13.85759 -13.65188 -13.31825 -13.15609 -13.06384 -12.88698 -12.83330 -12.69220 -12.44923 -12.31062 -11.81130 -11.58181 -11.34219 -10.89808 -10.80784 -9.37085 -8.90849 -8.59070 -6.22182 -1.10156 0.95523 1.27642 1.32698 1.38731 1.45197 1.52580 1.58474 1.60456 2.22399 2.24713 2.73411 2.76065 3.07722 3.68907 3.78066 3.93983 4.58381 4.65300 4.66854 4.68998 4.73291 5.19334 5.22841 5.25086 5.40895 5.43268 5.80956 5.87615 6.05484 6.12663 6.19027 6.40257 6.48564 6.77715 6.99660 7.11079 8.34612 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.004921 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.650234 B = 5689.073605 C = 5920.689733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.479 4.479 3 H 0.222 0.778 4 C 0.230 3.770 5 N -0.434 5.434 6 S 2.620 3.380 7 O -0.975 6.975 8 O -0.966 6.966 9 N -1.012 6.012 10 C -0.002 4.002 11 C -0.119 4.119 12 C -0.175 4.175 13 C 0.085 3.915 14 C -0.486 4.486 15 H 0.083 0.917 16 C 0.037 3.963 17 N -0.819 5.819 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.223 4.223 23 C -0.073 4.073 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.430 0.570 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.288 0.712 31 H 0.109 0.891 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 6.110 4.085 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.589 4.589 3 H 0.239 0.761 4 C -0.088 4.088 5 N -0.111 5.111 6 S 2.711 3.289 7 O -0.965 6.965 8 O -0.956 6.956 9 N -0.768 5.768 10 C -0.098 4.098 11 C -0.140 4.140 12 C -0.195 4.195 13 C 0.082 3.918 14 C -0.515 4.515 15 H 0.101 0.899 16 C -0.179 4.179 17 N -0.444 5.444 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.179 1.179 22 C -0.244 4.244 23 C -0.094 4.094 24 H 0.120 0.880 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.269 0.731 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.984 4.181 5.437 9.102 hybrid contribution -1.099 0.463 -0.453 1.276 sum 4.885 4.644 4.984 8.383 Atomic orbital electron populations 1.21966 0.86088 1.05215 1.07648 1.28503 1.08784 1.15012 1.06585 0.76138 1.27917 0.92964 0.93501 0.94465 1.81257 1.09398 1.09591 1.10878 1.05270 0.72814 0.75235 0.75532 1.93565 1.29730 1.87086 1.86089 1.93556 1.75461 1.42594 1.83992 1.52110 1.11943 1.69918 1.42782 1.16669 0.81547 0.93263 1.18333 1.21251 0.94337 0.97803 1.00594 1.20825 0.94427 0.97833 1.06463 1.18026 0.93615 0.92132 0.88030 1.19891 0.94349 0.99431 1.37853 0.89875 1.26704 1.05569 0.93895 0.91751 1.69910 1.40354 1.08820 1.25340 0.85305 0.76696 0.78634 0.79842 1.18993 1.19801 1.17881 1.20832 0.93556 0.97910 1.12080 1.20623 0.94795 0.95182 0.98843 0.87990 0.87548 0.91382 0.73064 0.86129 0.88735 0.90161 0.87316 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.16 71.98 0.59 -2.88 16 2 C -0.48 -9.92 3.40 28.79 0.10 -9.82 16 3 H 0.22 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.23 5.98 14.65 89.44 1.31 7.29 16 5 N -0.43 -13.25 18.54 20.01 0.37 -12.88 16 6 S 2.62 71.57 4.96 -56.49 -0.28 71.29 16 7 O -0.98 -29.66 18.08 -127.65 -2.31 -31.96 16 8 O -0.97 -34.25 14.71 -127.65 -1.88 -36.12 16 9 N -1.01 -26.03 5.63 -51.06 -0.29 -26.32 16 10 C 0.00 -0.05 3.96 38.67 0.15 0.10 16 11 C -0.12 -4.83 8.02 22.15 0.18 -4.66 16 12 C -0.18 -8.19 8.63 22.48 0.19 -8.00 16 13 C 0.09 3.95 5.56 -21.27 -0.12 3.83 16 14 C -0.49 -23.22 9.02 23.38 0.21 -23.01 16 15 H 0.08 3.77 7.91 -2.91 -0.02 3.74 16 16 C 0.04 1.71 5.11 85.22 0.44 2.14 16 17 N -0.82 -40.29 11.07 21.82 0.24 -40.04 16 18 Si 0.97 35.36 29.60 68.60 2.03 37.39 16 19 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 22 C -0.22 -8.67 9.74 22.47 0.22 -8.45 16 23 C -0.07 -2.31 9.35 22.15 0.21 -2.10 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.11 2.70 4.60 -2.38 -0.01 2.69 16 26 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 27 H 0.43 8.62 8.91 -96.75 -0.86 7.76 16 28 H 0.12 5.07 5.57 -2.91 -0.02 5.05 16 29 H 0.09 4.84 6.26 -2.91 -0.02 4.82 16 30 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 31 H 0.11 3.92 8.06 -2.91 -0.02 3.89 16 32 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -62.50 291.46 1.68 -60.82 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.32 Total: 23.39 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 3.47 Total: -45.56 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: 0.32 Total: -79.24 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -4.19 Total: -68.09 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 71.57 SS G_CDS: -0.28 Total: 71.29 kcal Total: -62.50 1.68 -60.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088473475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.654 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds