Wall clock time and date at job start Tue Mar 31 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.47210 * 109.47030 * 240.00606 * 2 1 3 5 5 N 2.60808 * 109.47023 * 240.00581 * 2 1 3 6 6 S 1.81399 * 109.47339 * 120.00434 * 2 1 3 7 7 O 1.42103 * 110.54227 * 56.30864 * 6 2 1 8 8 O 1.42092 * 110.54437 * 193.05862 * 6 2 1 9 9 N 1.65601 * 104.44731 * 304.68659 * 6 2 1 10 10 C 1.38857 * 119.99930 * 298.95692 * 9 6 2 11 11 C 1.39557 * 119.84314 * 313.52713 * 10 9 6 12 12 C 1.36340 * 120.16033 * 179.71663 * 11 10 9 13 13 C 1.40886 * 119.83463 * 0.55240 * 12 11 10 14 14 C 1.41139 * 120.15544 * 179.69933 * 13 12 11 15 15 H 1.07997 * 120.00196 * 207.64355 * 14 13 12 16 16 C 1.39873 * 119.99881 * 27.63919 * 14 13 12 17 17 N 1.30898 * 119.99723 * 11.95690 * 16 14 13 18 18 Si 1.86796 * 119.99842 * 191.95109 * 16 14 13 19 19 H 1.48505 * 109.47179 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46723 * 120.00146 * 18 16 14 21 21 H 1.48497 * 109.47571 * 240.00141 * 18 16 14 22 22 C 1.40879 * 119.69026 * 359.71897 * 13 12 11 23 23 C 1.36341 * 119.83560 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.47234 * 295.36567 * 1 2 3 25 25 H 1.08999 * 109.47469 * 55.37023 * 1 2 3 26 26 H 1.09002 * 109.46989 * 175.36917 * 1 2 3 27 27 H 0.97004 * 119.99968 * 118.96511 * 9 6 2 28 28 H 1.08005 * 119.92418 * 359.97438 * 11 10 9 29 29 H 1.08005 * 120.08302 * 180.27360 * 12 11 10 30 30 H 0.97008 * 119.99360 * 179.97438 * 17 16 14 31 31 H 1.07999 * 120.08346 * 179.97438 * 22 13 12 32 32 H 1.07999 * 119.91786 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 16 2.1347 -0.8552 1.4810 7 8 1.6050 -2.1722 1.5476 8 8 3.5230 -0.6139 1.6643 9 7 1.4120 -0.0602 2.7412 10 6 1.6589 1.2913 2.9425 11 6 2.9681 1.7724 2.8973 12 6 3.2174 3.0992 3.0883 13 6 2.1504 3.9832 3.3433 14 6 2.4013 5.3569 3.5483 15 1 1.7287 5.9438 4.1561 16 6 3.5211 5.9580 2.9642 17 7 4.2029 5.3197 2.0470 18 14 4.0435 7.6717 3.4931 19 1 3.1141 8.1723 4.5375 20 1 5.4228 7.6215 4.0413 21 1 4.0094 8.5833 2.3214 22 6 0.8319 3.4895 3.3931 23 6 0.5970 2.1611 3.1950 24 1 -0.3633 0.4402 0.9286 25 1 -0.3634 0.5840 -0.8456 26 1 -0.3633 -1.0243 -0.0830 27 1 0.8164 -0.5387 3.3389 28 1 3.7856 1.0928 2.7065 29 1 4.2307 3.4709 3.0487 30 1 4.9793 5.7368 1.6418 31 1 0.0092 4.1614 3.5885 32 1 -0.4132 1.7811 3.2333 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088473476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:18 Heat of formation + Delta-G solvation = -24.337665 kcal Electronic energy + Delta-G solvation = -19372.701928 eV Core-core repulsion = 16232.377519 eV Total energy + Delta-G solvation = -3140.324409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.24224 -37.17874 -36.90264 -35.84555 -35.01718 -33.30235 -32.87342 -29.71541 -28.87890 -25.14992 -24.82842 -21.41281 -21.08601 -19.70525 -18.16158 -17.52759 -17.41332 -16.78023 -16.35664 -15.36962 -15.05027 -14.45155 -14.18129 -13.70379 -13.44285 -13.37486 -12.96103 -12.86909 -12.60960 -12.42129 -12.12556 -11.97916 -11.80508 -11.78681 -11.76882 -11.54903 -11.24805 -10.87239 -10.68470 -10.63706 -10.28396 -9.90094 -9.46069 -9.07289 -7.79446 -7.32504 -6.94257 -4.53784 0.16483 2.49297 2.50475 2.58175 2.83561 2.88069 2.98375 3.01950 3.02859 3.39853 3.78764 3.94462 4.24600 4.41740 4.75187 4.96382 5.39293 5.42000 5.52097 5.86116 5.99584 6.01360 6.24840 6.80168 6.84268 6.97581 7.00500 7.23038 7.28786 7.41518 7.68611 7.84727 7.93803 8.05455 8.42491 8.66256 8.73891 9.98289 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026259 B = 0.004953 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.064408 B = 5652.012020 C = 5950.678887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.505 4.505 3 H 0.181 0.819 4 C 0.219 3.781 5 N -0.402 5.402 6 S 2.604 3.396 7 O -0.961 6.961 8 O -0.934 6.934 9 N -1.017 6.017 10 C -0.026 4.026 11 C -0.119 4.119 12 C -0.148 4.148 13 C 0.110 3.890 14 C -0.446 4.446 15 H 0.082 0.918 16 C 0.071 3.929 17 N -0.786 5.786 18 Si 0.913 3.087 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.215 4.215 23 C -0.083 4.083 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.415 0.585 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.284 0.716 31 H 0.098 0.902 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -3.714 -0.028 6.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.611 4.611 3 H 0.198 0.802 4 C -0.100 4.100 5 N -0.079 5.079 6 S 2.694 3.306 7 O -0.951 6.951 8 O -0.923 6.923 9 N -0.771 5.771 10 C -0.123 4.123 11 C -0.141 4.141 12 C -0.169 4.169 13 C 0.107 3.893 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.148 4.148 17 N -0.411 5.411 18 Si 0.737 3.263 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.236 4.236 23 C -0.105 4.105 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.252 0.748 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.380 -5.237 -1.739 7.046 hybrid contribution -0.492 1.505 0.329 1.617 sum -4.872 -3.732 -1.410 6.297 Atomic orbital electron populations 1.21562 0.87062 1.04442 1.05981 1.28467 1.08307 1.14485 1.09841 0.80190 1.27592 0.93989 0.93964 0.94489 1.81222 1.08000 1.09101 1.09562 1.06255 0.75616 0.73855 0.74916 1.93552 1.80536 1.35535 1.85446 1.93595 1.30475 1.85183 1.83086 1.52340 1.65077 1.19025 1.40618 1.16834 0.93687 0.80835 1.20902 1.21252 0.94400 0.97306 1.01095 1.21105 1.00022 0.91067 1.04673 1.17796 0.90676 0.93356 0.87491 1.19711 1.07068 0.94463 1.26313 0.90012 1.25990 0.95156 1.00487 0.93154 1.69811 1.14995 1.38277 1.18032 0.86168 0.79426 0.81047 0.79612 1.18312 1.19566 1.19851 1.20685 0.96286 0.94245 1.12405 1.20319 0.95795 0.93411 1.01008 0.88620 0.89868 0.90496 0.74833 0.85630 0.85600 0.90489 0.88390 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.08 37.16 0.34 -1.01 16 2 C -0.51 -6.59 3.18 -29.51 -0.09 -6.68 16 3 H 0.18 2.23 8.14 -51.93 -0.42 1.81 16 4 C 0.22 3.29 14.65 -20.76 -0.30 2.99 16 5 N -0.40 -6.75 18.54 42.15 0.78 -5.97 16 6 S 2.60 39.85 4.75 -107.50 -0.51 39.34 16 7 O -0.96 -15.94 18.07 -57.54 -1.04 -16.98 16 8 O -0.93 -17.52 15.15 -57.54 -0.87 -18.39 16 9 N -1.02 -14.76 4.98 32.51 0.16 -14.60 16 10 C -0.03 -0.46 6.01 -83.69 -0.50 -0.96 16 11 C -0.12 -2.50 9.16 -39.77 -0.36 -2.86 16 12 C -0.15 -3.44 8.61 -39.26 -0.34 -3.78 16 13 C 0.11 2.57 5.56 -106.80 -0.59 1.97 16 14 C -0.45 -10.49 9.05 -37.87 -0.34 -10.84 16 15 H 0.08 1.84 7.87 -52.49 -0.41 1.43 16 16 C 0.07 1.61 5.23 -17.34 -0.09 1.52 16 17 N -0.79 -18.49 10.82 55.54 0.60 -17.89 16 18 Si 0.91 17.04 29.58 -169.99 -5.03 12.01 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.22 -4.40 9.74 -39.27 -0.38 -4.78 16 23 C -0.08 -1.47 9.90 -39.77 -0.39 -1.87 16 24 H 0.10 0.88 7.59 -51.93 -0.39 0.49 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.41 4.91 8.92 -34.47 -0.31 4.60 16 28 H 0.13 2.64 5.61 -52.48 -0.29 2.35 16 29 H 0.13 3.09 6.16 -52.48 -0.32 2.76 16 30 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 31 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -28.28 298.36 -7.46 -35.74 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -2.98 Total: 8.54 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.07 Total: -26.30 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.54 Total: -38.46 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.91 Total: -35.36 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: 39.85 SS G_CDS: -0.51 Total: 39.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.28 -7.46 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088473476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.405 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds